RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 GYS1P13807 737 aa19.73■□□□□ 0.75
TRIM54-204ENST00000488321 TMPOP42166 694 aaKnown RBP19.73■□□□□ 0.75
TRIM54-204ENST00000488321 RUNDC1Q96C34 613 aa19.73■□□□□ 0.75
TRIM54-204ENST00000488321 LMOD3Q0VAK6 560 aa19.72■□□□□ 0.75
TRIM54-204ENST00000488321 NLGN2Q8NFZ4 835 aa19.72■□□□□ 0.75
TRIM54-204ENST00000488321 PNISRQ8TF01 805 aaKnown RBP19.72■□□□□ 0.75
TRIM54-204ENST00000488321 ZNF330Q9Y3S2 320 aaPredicted RBP19.72■□□□□ 0.75
TRIM54-204ENST00000488321 USP42Q9H9J4 1324 aaKnown RBP19.72■□□□□ 0.75
TRIM54-204ENST00000488321 ZPR1O75312 459 aa19.71■□□□□ 0.75
TRIM54-204ENST00000488321 CICQ96RK0 1608 aaPredicted RBP19.71■□□□□ 0.75
TRIM54-204ENST00000488321 COL15A1P39059 1388 aa19.7■□□□□ 0.74
TRIM54-204ENST00000488321 SNRPA1P09661 255 aaKnown RBP19.7■□□□□ 0.74
TRIM54-204ENST00000488321 PELP1Q8IZL8 1130 aaKnown RBP19.7■□□□□ 0.74
TRIM54-204ENST00000488321 PRAMEF22A3QJZ6 481 aa19.69■□□□□ 0.74
TRIM54-204ENST00000488321 A1BGP04217 495 aa19.69■□□□□ 0.74
TRIM54-204ENST00000488321 USPL1Q5W0Q7 1092 aa19.69■□□□□ 0.74
TRIM54-204ENST00000488321 NPM2Q86SE8 214 aaKnown RBP19.69■□□□□ 0.74
TRIM54-204ENST00000488321 CD2APQ9Y5K6 639 aa19.69■□□□□ 0.74
TRIM54-204ENST00000488321 FKBP8Q14318 412 aa19.68■□□□□ 0.74
TRIM54-204ENST00000488321 CCDC184Q52MB2 194 aa19.68■□□□□ 0.74
TRIM54-204ENST00000488321 USP16Q9Y5T5 823 aa19.68■□□□□ 0.74
TRIM54-204ENST00000488321 PARP3Q9Y6F1 533 aa19.68■□□□□ 0.74
TRIM54-204ENST00000488321 COL24A1Q17RW2 1714 aa19.68■□□□□ 0.74
TRIM54-204ENST00000488321 UBR2Q8IWV8 1755 aa19.67■□□□□ 0.74
TRIM54-204ENST00000488321 GPR162Q16538 588 aa19.67■□□□□ 0.74
TRIM54-204ENST00000488321 NARFQ9UHQ1 456 aa19.67■□□□□ 0.74
TRIM54-204ENST00000488321 TSPYL4Q9UJ04 414 aa19.67■□□□□ 0.74
TRIM54-204ENST00000488321 SIPA1L3O60292 1781 aaPredicted RBP19.67■□□□□ 0.74
TRIM54-204ENST00000488321 VIRMAQ69YN4 1812 aaKnown RBP19.67■□□□□ 0.74
TRIM54-204ENST00000488321 A0A087WZG4 1122 aa19.66■□□□□ 0.74
TRIM54-204ENST00000488321 EIF5P55010 431 aaKnown RBP19.66■□□□□ 0.74
TRIM54-204ENST00000488321 MRS2Q9HD23 443 aa19.66■□□□□ 0.74
TRIM54-204ENST00000488321 IL6STP40189 918 aaPredicted RBP19.65■□□□□ 0.74
TRIM54-204ENST00000488321 PIP4K2AP48426 406 aaPredicted RBP19.65■□□□□ 0.74
TRIM54-204ENST00000488321 MYH14Q7Z406 1995 aaKnown RBP19.64■□□□□ 0.74
TRIM54-204ENST00000488321 EIF4A1P60842 406 aaKnown RBP19.64■□□□□ 0.73
TRIM54-204ENST00000488321 TBC1D2BQ9UPU7 963 aa19.64■□□□□ 0.73
TRIM54-204ENST00000488321 APAF1O14727 1248 aa19.63■□□□□ 0.73
TRIM54-204ENST00000488321 TRIM35Q9UPQ4 493 aa19.63■□□□□ 0.73
TRIM54-204ENST00000488321 LAS1LQ9Y4W2 734 aaKnown RBP19.63■□□□□ 0.73
TRIM54-204ENST00000488321 DDR1Q08345 913 aa19.62■□□□□ 0.73
TRIM54-204ENST00000488321 GIGYF1O75420 1035 aaPredicted RBP19.61■□□□□ 0.73
TRIM54-204ENST00000488321 BCL2L12Q9HB09 334 aa19.61■□□□□ 0.73
TRIM54-204ENST00000488321 WWC3Q9ULE0 1092 aa19.61■□□□□ 0.73
TRIM54-204ENST00000488321 C4AP0C0L4 1744 aa19.6■□□□□ 0.73
TRIM54-204ENST00000488321 TM4SF1P30408 202 aa19.6■□□□□ 0.73
TRIM54-204ENST00000488321 NFIXQ14938 502 aa19.6■□□□□ 0.73
TRIM54-204ENST00000488321 BICDL1Q6ZP65 573 aa19.6■□□□□ 0.73
TRIM54-204ENST00000488321 DZIP3Q86Y13 1208 aaKnown RBP19.6■□□□□ 0.73
TRIM54-204ENST00000488321 POLRMTO00411 1230 aaKnown RBP19.59■□□□□ 0.73
TRIM54-204ENST00000488321 BABAM1Q9NWV8 329 aa19.59■□□□□ 0.73
TRIM54-204ENST00000488321 NBPF26B4DH59 902 aa19.58■□□□□ 0.72
TRIM54-204ENST00000488321 NBPF10Q6P3W6 841 aaKnown RBP19.58■□□□□ 0.72
TRIM54-204ENST00000488321 NBPF15Q8N660 670 aa19.58■□□□□ 0.72
TRIM54-204ENST00000488321 C10orf71Q711Q0 1435 aa19.58■□□□□ 0.72
TRIM54-204ENST00000488321 DLG5Q8TDM6 1919 aa19.57■□□□□ 0.72
TRIM54-204ENST00000488321 YBX3P16989 372 aaKnown RBP eCLIP19.57■□□□□ 0.72
TRIM54-204ENST00000488321 YY1P25490 414 aa19.57■□□□□ 0.72
TRIM54-204ENST00000488321 SENP3-EIF4A1A0A087X0R7 540 aa19.56■□□□□ 0.72
TRIM54-204ENST00000488321 CAMTA2O94983 1202 aa19.56■□□□□ 0.72
TRIM54-204ENST00000488321 TGFB2P61812 414 aa19.56■□□□□ 0.72
TRIM54-204ENST00000488321 TBC1D9BQ66K14 1250 aa19.56■□□□□ 0.72
TRIM54-204ENST00000488321 NGEFQ8N5V2 710 aa19.56■□□□□ 0.72
TRIM54-204ENST00000488321 A0A0G2JLW4 131 aa19.55■□□□□ 0.72
TRIM54-204ENST00000488321 CHL1O00533 1208 aa19.55■□□□□ 0.72
TRIM54-204ENST00000488321 GRIN3BO60391 1043 aa19.55■□□□□ 0.72
TRIM54-204ENST00000488321 SERPINB2P05120 415 aa19.55■□□□□ 0.72
TRIM54-204ENST00000488321 MYL6BP14649 208 aa19.55■□□□□ 0.72
TRIM54-204ENST00000488321 EIF2S2P20042 333 aaKnown RBP19.55■□□□□ 0.72
TRIM54-204ENST00000488321 DPEP1P16444 411 aa19.54■□□□□ 0.72
TRIM54-204ENST00000488321 PXDNLA1KZ92 1463 aa19.54■□□□□ 0.72
TRIM54-204ENST00000488321 KDM3BQ7LBC6 1761 aa19.53■□□□□ 0.72
TRIM54-204ENST00000488321 CALD1Q05682 793 aaKnown RBP19.53■□□□□ 0.72
TRIM54-204ENST00000488321 CFAP44Q96MT7 982 aa19.53■□□□□ 0.72
TRIM54-204ENST00000488321 ZNF652Q9Y2D9 606 aa19.53■□□□□ 0.72
TRIM54-204ENST00000488321 NPHP1O15259 732 aa19.52■□□□□ 0.72
TRIM54-204ENST00000488321 KRT24Q2M2I5 525 aa19.52■□□□□ 0.72
TRIM54-204ENST00000488321 NECTIN2Q92692 538 aa19.52■□□□□ 0.72
TRIM54-204ENST00000488321 SETDB2Q96T68 719 aa19.52■□□□□ 0.72
TRIM54-204ENST00000488321 UTRNP46939 3433 aa19.51■□□□□ 0.71
TRIM54-204ENST00000488321 FAM9BQ8IZU0 186 aa19.51■□□□□ 0.71
TRIM54-204ENST00000488321 GOLGB1Q14789 3259 aaKnown RBP19.51■□□□□ 0.71
TRIM54-204ENST00000488321 CARMIL3Q8ND23 1372 aa19.5■□□□□ 0.71
TRIM54-204ENST00000488321 KIF6Q6ZMV9 814 aa19.5■□□□□ 0.71
TRIM54-204ENST00000488321 MBIPQ9NS73 344 aa19.5■□□□□ 0.71
TRIM54-204ENST00000488321 BCS1LQ9Y276 419 aa19.5■□□□□ 0.71
TRIM54-204ENST00000488321 ERBB4Q15303 1308 aa19.5■□□□□ 0.71
TRIM54-204ENST00000488321 CHRNA5P30532 468 aa19.49■□□□□ 0.71
TRIM54-204ENST00000488321 GNAI1P63096 354 aa19.49■□□□□ 0.71
TRIM54-204ENST00000488321 CLEC4GQ6UXB4 293 aa19.49■□□□□ 0.71
TRIM54-204ENST00000488321 IFT57Q9NWB7 429 aa19.49■□□□□ 0.71
TRIM54-204ENST00000488321 TTLL7Q6ZT98 887 aa19.48■□□□□ 0.71
TRIM54-204ENST00000488321 CCDC24Q8N4L8 307 aa19.48■□□□□ 0.71
TRIM54-204ENST00000488321 NIP7Q9Y221 180 aaKnown RBP eCLIP19.48■□□□□ 0.71
TRIM54-204ENST00000488321 SCN7AQ01118 1682 aa19.47■□□□□ 0.71
TRIM54-204ENST00000488321 ANXA1P04083 346 aa19.47■□□□□ 0.71
TRIM54-204ENST00000488321 HLFQ16534 295 aa19.47■□□□□ 0.71
TRIM54-204ENST00000488321 CNBD1Q8NA66 436 aa19.47■□□□□ 0.71
TRIM54-204ENST00000488321 ZBTB3Q9H5J0 574 aa19.47■□□□□ 0.71
TRIM54-204ENST00000488321 PIM2Q9P1W9 311 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms