RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 SSFA2P28290 1259 aa20.42■□□□□ 0.86
C9orf3-219ENST00000488186 CRKLP46109 303 aaKnown RBP20.42■□□□□ 0.86
C9orf3-219ENST00000488186 HNRNPUQ00839 825 aaKnown RBP eCLIP20.42■□□□□ 0.86
C9orf3-219ENST00000488186 NPM2Q86SE8 214 aaKnown RBP20.42■□□□□ 0.86
C9orf3-219ENST00000488186 MTFR1LQ9H019 292 aa20.42■□□□□ 0.86
C9orf3-219ENST00000488186 SPON1Q9HCB6 807 aa20.42■□□□□ 0.86
C9orf3-219ENST00000488186 RTCBQ9Y3I0 505 aaKnown RBP20.42■□□□□ 0.86
C9orf3-219ENST00000488186 MYH14Q7Z406 1995 aaKnown RBP20.41■□□□□ 0.86
C9orf3-219ENST00000488186 CYP19A1P11511 503 aaPredicted RBP20.41■□□□□ 0.86
C9orf3-219ENST00000488186 CCDC87Q9NVE4 849 aa20.41■□□□□ 0.86
C9orf3-219ENST00000488186 TJP1Q07157 1748 aa20.41■□□□□ 0.86
C9orf3-219ENST00000488186 GIGYF1O75420 1035 aaPredicted RBP20.4■□□□□ 0.86
C9orf3-219ENST00000488186 PHF14O94880 888 aa20.4■□□□□ 0.86
C9orf3-219ENST00000488186 USP16Q9Y5T5 823 aa20.4■□□□□ 0.86
C9orf3-219ENST00000488186 ADRA2BP18089 450 aa20.39■□□□□ 0.85
C9orf3-219ENST00000488186 CANXP27824 592 aaKnown RBP20.39■□□□□ 0.85
C9orf3-219ENST00000488186 GOLGA2Q08379 1002 aa20.39■□□□□ 0.85
C9orf3-219ENST00000488186 MYH16Q9H6N6 1097 aa20.39■□□□□ 0.85
C9orf3-219ENST00000488186 PRAMEF22A3QJZ6 481 aa20.38■□□□□ 0.85
C9orf3-219ENST00000488186 RPS6KA4O75676 772 aa20.38■□□□□ 0.85
C9orf3-219ENST00000488186 TRAPPC3LQ5T215 181 aa20.38■□□□□ 0.85
C9orf3-219ENST00000488186 TSR2Q969E8 191 aaKnown RBP20.38■□□□□ 0.85
C9orf3-219ENST00000488186 PDGFDQ9GZP0 370 aaPredicted RBP20.38■□□□□ 0.85
C9orf3-219ENST00000488186 KDM3BQ7LBC6 1761 aa20.37■□□□□ 0.85
C9orf3-219ENST00000488186 EIF2S2P20042 333 aaKnown RBP20.37■□□□□ 0.85
C9orf3-219ENST00000488186 INTS5Q6P9B9 1019 aaKnown RBP20.37■□□□□ 0.85
C9orf3-219ENST00000488186 COL23A1Q86Y22 540 aaPredicted RBP20.37■□□□□ 0.85
C9orf3-219ENST00000488186 ZNF330Q9Y3S2 320 aaPredicted RBP20.37■□□□□ 0.85
C9orf3-219ENST00000488186 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.36■□□□□ 0.85
C9orf3-219ENST00000488186 A1BGP04217 495 aa20.36■□□□□ 0.85
C9orf3-219ENST00000488186 ARXQ96QS3 562 aa20.36■□□□□ 0.85
C9orf3-219ENST00000488186 SGIP1Q9BQI5 828 aa20.36■□□□□ 0.85
C9orf3-219ENST00000488186 ELL2O00472 640 aaPredicted RBP20.35■□□□□ 0.85
C9orf3-219ENST00000488186 RFC4P35249 363 aa20.35■□□□□ 0.85
C9orf3-219ENST00000488186 DUSP27Q5VZP5 1158 aa20.35■□□□□ 0.85
C9orf3-219ENST00000488186 CHMP4AQ9BY43 222 aa20.35■□□□□ 0.85
C9orf3-219ENST00000488186 ZBTB1Q9Y2K1 713 aa20.35■□□□□ 0.85
C9orf3-219ENST00000488186 E9PSI1 815 aa20.34■□□□□ 0.85
C9orf3-219ENST00000488186 PTGER2P43116 358 aa20.34■□□□□ 0.85
C9orf3-219ENST00000488186 KRT24Q2M2I5 525 aa20.34■□□□□ 0.85
C9orf3-219ENST00000488186 SMIM5Q71RC9 77 aa20.34■□□□□ 0.85
C9orf3-219ENST00000488186 NECTIN2Q92692 538 aa20.34■□□□□ 0.85
C9orf3-219ENST00000488186 ZNF521Q96K83 1311 aa20.33■□□□□ 0.85
C9orf3-219ENST00000488186 HOXB7P09629 217 aa20.33■□□□□ 0.85
C9orf3-219ENST00000488186 FANCIQ9NVI1 1328 aa20.32■□□□□ 0.84
C9orf3-219ENST00000488186 A0A087WZG4 1122 aa20.32■□□□□ 0.84
C9orf3-219ENST00000488186 ZBTB7AO95365 584 aa20.32■□□□□ 0.84
C9orf3-219ENST00000488186 HDGFL1Q5TGJ6 251 aa20.32■□□□□ 0.84
C9orf3-219ENST00000488186 ARHGEF1Q92888 912 aaKnown RBP20.32■□□□□ 0.84
C9orf3-219ENST00000488186 ZPR1O75312 459 aa20.31■□□□□ 0.84
C9orf3-219ENST00000488186 IL6STP40189 918 aaPredicted RBP20.31■□□□□ 0.84
C9orf3-219ENST00000488186 PIP4K2AP48426 406 aaPredicted RBP20.31■□□□□ 0.84
C9orf3-219ENST00000488186 AMIGO3Q86WK7 504 aa20.31■□□□□ 0.84
C9orf3-219ENST00000488186 C8orf58Q8NAV2 365 aa20.31■□□□□ 0.84
C9orf3-219ENST00000488186 SPINK5Q9NQ38 1064 aaPredicted RBP20.31■□□□□ 0.84
C9orf3-219ENST00000488186 MYL6BP14649 208 aa20.3■□□□□ 0.84
C9orf3-219ENST00000488186 SOS1Q07889 1333 aaPredicted RBP20.29■□□□□ 0.84
C9orf3-219ENST00000488186 EIF5P55010 431 aaKnown RBP20.29■□□□□ 0.84
C9orf3-219ENST00000488186 EXOSC9Q06265 439 aaKnown RBP20.29■□□□□ 0.84
C9orf3-219ENST00000488186 SLFN5Q08AF3 891 aa20.29■□□□□ 0.84
C9orf3-219ENST00000488186 TWISTNBQ3B726 338 aaPredicted RBP20.29■□□□□ 0.84
C9orf3-219ENST00000488186 ATF5Q9Y2D1 282 aaPredicted RBP20.29■□□□□ 0.84
C9orf3-219ENST00000488186 ERBB4Q15303 1308 aa20.28■□□□□ 0.84
C9orf3-219ENST00000488186 CDCA7LQ96GN5 454 aa20.28■□□□□ 0.84
C9orf3-219ENST00000488186 COL15A1P39059 1388 aa20.27■□□□□ 0.84
C9orf3-219ENST00000488186 POLD1P28340 1107 aa20.27■□□□□ 0.84
C9orf3-219ENST00000488186 CCDC30Q5VVM6 783 aa20.27■□□□□ 0.84
C9orf3-219ENST00000488186 TSPYL6Q8N831 410 aa20.27■□□□□ 0.84
C9orf3-219ENST00000488186 C4AP0C0L4 1744 aa20.27■□□□□ 0.83
C9orf3-219ENST00000488186 NBPF26B4DH59 902 aa20.26■□□□□ 0.83
C9orf3-219ENST00000488186 NBPF10Q6P3W6 841 aaKnown RBP20.26■□□□□ 0.83
C9orf3-219ENST00000488186 NLGN1Q8N2Q7 840 aa20.26■□□□□ 0.83
C9orf3-219ENST00000488186 NBPF15Q8N660 670 aa20.26■□□□□ 0.83
C9orf3-219ENST00000488186 DBF4Q9UBU7 674 aaPredicted RBP20.26■□□□□ 0.83
C9orf3-219ENST00000488186 TBC1D2BQ9UPU7 963 aa20.26■□□□□ 0.83
C9orf3-219ENST00000488186 DZIP3Q86Y13 1208 aaKnown RBP20.25■□□□□ 0.83
C9orf3-219ENST00000488186 STK31Q9BXU1 1019 aa20.25■□□□□ 0.83
C9orf3-219ENST00000488186 DDX21Q9NR30 783 aaKnown RBP eCLIP20.25■□□□□ 0.83
C9orf3-219ENST00000488186 NARFQ9UHQ1 456 aa20.25■□□□□ 0.83
C9orf3-219ENST00000488186 LAMB4A4D0S4 1761 aa20.24■□□□□ 0.83
C9orf3-219ENST00000488186 USPL1Q5W0Q7 1092 aa20.24■□□□□ 0.83
C9orf3-219ENST00000488186 MSL1Q68DK7 614 aa20.24■□□□□ 0.83
C9orf3-219ENST00000488186 KIF6Q6ZMV9 814 aa20.24■□□□□ 0.83
C9orf3-219ENST00000488186 CHPF2Q9P2E5 772 aa20.24■□□□□ 0.83
C9orf3-219ENST00000488186 PPP1R1BQ9UD71 204 aaPredicted RBP20.24■□□□□ 0.83
C9orf3-219ENST00000488186 SRP68Q9UHB9 627 aaKnown RBP20.24■□□□□ 0.83
C9orf3-219ENST00000488186 ZBED9Q6R2W3 1325 aa20.24■□□□□ 0.83
C9orf3-219ENST00000488186 RGL2O15211 777 aa20.23■□□□□ 0.83
C9orf3-219ENST00000488186 ANXA1P04083 346 aa20.23■□□□□ 0.83
C9orf3-219ENST00000488186 YTHDC1Q96MU7 727 aaKnown RBP20.23■□□□□ 0.83
C9orf3-219ENST00000488186 HYPKQ9NX55 129 aa20.23■□□□□ 0.83
C9orf3-219ENST00000488186 USP42Q9H9J4 1324 aaKnown RBP20.23■□□□□ 0.83
C9orf3-219ENST00000488186 AIMP1Q12904 312 aaKnown RBP20.22■□□□□ 0.83
C9orf3-219ENST00000488186 VAMP4O75379 141 aa20.21■□□□□ 0.83
C9orf3-219ENST00000488186 GYS1P13807 737 aa20.21■□□□□ 0.83
C9orf3-219ENST00000488186 PDIA6Q15084 440 aa20.21■□□□□ 0.83
C9orf3-219ENST00000488186 TCERG1O14776 1098 aaKnown RBP20.2■□□□□ 0.82
C9orf3-219ENST00000488186 PROSER3Q2NL68 480 aa20.2■□□□□ 0.82
C9orf3-219ENST00000488186 ZNF652Q9Y2D9 606 aa20.2■□□□□ 0.82
C9orf3-219ENST00000488186 COPS6Q7L5N1 327 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms