RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 WWC2Q6AWC2 1192 aa19.16■□□□□ 0.66
COL7A1-210ENST00000487017 BIVM-ERCC5R4GMW8 1640 aa19.16■□□□□ 0.66
COL7A1-210ENST00000487017 PDCL3Q9H2J4 239 aa19.16■□□□□ 0.66
COL7A1-210ENST00000487017 ZC3H6P61129 1189 aaKnown RBP19.16■□□□□ 0.66
COL7A1-210ENST00000487017 C14orf93Q9H972 538 aaKnown RBP19.16■□□□□ 0.66
COL7A1-210ENST00000487017 GRIN2AQ12879 1464 aa19.16■□□□□ 0.66
COL7A1-210ENST00000487017 ANKRD62A6NC57 917 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 ERICH4A6NGS2 130 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 TOP1P11387 765 aaKnown RBP19.15■□□□□ 0.66
COL7A1-210ENST00000487017 UVSSAQ2YD98 709 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 ECHDC1Q9NTX5 307 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 ADCY5O95622 1261 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 SSBP05455 408 aaKnown RBP eCLIP19.15■□□□□ 0.66
COL7A1-210ENST00000487017 ARHGAP45Q92619 1136 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 DBF4Q9UBU7 674 aaPredicted RBP19.15■□□□□ 0.66
COL7A1-210ENST00000487017 TNNT1P13805 278 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 USHBP1Q8N6Y0 703 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 PPP1R1BQ9UD71 204 aaPredicted RBP19.15■□□□□ 0.66
COL7A1-210ENST00000487017 GUCY1B3Q02153 619 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 HYPKQ9NX55 129 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 ZSCAN23Q3MJ62 389 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 CGNQ9P2M7 1197 aaKnown RBP19.15■□□□□ 0.66
COL7A1-210ENST00000487017 RBM27Q9P2N5 1060 aaKnown RBP19.15■□□□□ 0.66
COL7A1-210ENST00000487017 TTC21BQ7Z4L5 1316 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 ASXL1Q8IXJ9 1541 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 LAMC3Q9Y6N6 1575 aa19.15■□□□□ 0.66
COL7A1-210ENST00000487017 ZNF397Q8NF99 534 aaPredicted RBP19.14■□□□□ 0.66
COL7A1-210ENST00000487017 STARD3NLO95772 234 aa19.14■□□□□ 0.65
COL7A1-210ENST00000487017 CASQ1P31415 396 aa19.14■□□□□ 0.65
COL7A1-210ENST00000487017 LARP6Q9BRS8 491 aaKnown RBP19.14■□□□□ 0.65
COL7A1-210ENST00000487017 CENPHQ9H3R5 247 aa19.14■□□□□ 0.65
COL7A1-210ENST00000487017 CCDC196A0A1B0GTZ2 297 aa19.14■□□□□ 0.65
COL7A1-210ENST00000487017 CBX1P83916 185 aa19.14■□□□□ 0.65
COL7A1-210ENST00000487017 PIBF1Q8WXW3 757 aa19.14■□□□□ 0.65
COL7A1-210ENST00000487017 UBE2HP62256 183 aa19.13■□□□□ 0.65
COL7A1-210ENST00000487017 PCDHB15Q9Y5E8 787 aa19.13■□□□□ 0.65
COL7A1-210ENST00000487017 KIF5CO60282 957 aa19.13■□□□□ 0.65
COL7A1-210ENST00000487017 POGZQ7Z3K3 1410 aa19.13■□□□□ 0.65
COL7A1-210ENST00000487017 URI1O94763 535 aaPredicted RBP19.13■□□□□ 0.65
COL7A1-210ENST00000487017 FSIP1Q8NA03 581 aa19.13■□□□□ 0.65
COL7A1-210ENST00000487017 TAF3Q5VWG9 929 aa19.13■□□□□ 0.65
COL7A1-210ENST00000487017 STX1AQ16623 288 aa19.12■□□□□ 0.65
COL7A1-210ENST00000487017 C8orf34Q49A92 452 aa19.12■□□□□ 0.65
COL7A1-210ENST00000487017 TAF4BQ92750 862 aa19.12■□□□□ 0.65
COL7A1-210ENST00000487017 NAPBQ9H115 298 aa19.12■□□□□ 0.65
COL7A1-210ENST00000487017 GSDMDP57764 484 aa19.12■□□□□ 0.65
COL7A1-210ENST00000487017 ABCF2Q9UG63 623 aa19.12■□□□□ 0.65
COL7A1-210ENST00000487017 C16orf45Q96MC5 204 aaPredicted RBP19.12■□□□□ 0.65
COL7A1-210ENST00000487017 CD109Q6YHK3 1445 aa19.12■□□□□ 0.65
COL7A1-210ENST00000487017 PARD3Q8TEW0 1356 aa19.12■□□□□ 0.65
COL7A1-210ENST00000487017 PHAXQ9H814 394 aaKnown RBP19.12■□□□□ 0.65
COL7A1-210ENST00000487017 ZNF213O14771 459 aa19.11■□□□□ 0.65
COL7A1-210ENST00000487017 LRSAM1Q6UWE0 723 aa19.11■□□□□ 0.65
COL7A1-210ENST00000487017 MPRIPQ6WCQ1 1025 aa19.11■□□□□ 0.65
COL7A1-210ENST00000487017 KLHL10Q6JEL2 608 aa19.11■□□□□ 0.65
COL7A1-210ENST00000487017 THOC2Q8NI27 1593 aaKnown RBP19.11■□□□□ 0.65
COL7A1-210ENST00000487017 TFIP11Q9UBB9 837 aaKnown RBP19.11■□□□□ 0.65
COL7A1-210ENST00000487017 PIK3R4Q99570 1358 aa19.11■□□□□ 0.65
COL7A1-210ENST00000487017 TMX3Q96JJ7 454 aa19.1■□□□□ 0.65
COL7A1-210ENST00000487017 GOLGA6L7A0A1B0GV03 622 aa19.1■□□□□ 0.65
COL7A1-210ENST00000487017 FAM83GA6ND36 823 aa19.1■□□□□ 0.65
COL7A1-210ENST00000487017 HSP90AB3PQ58FF7 597 aa19.1■□□□□ 0.65
COL7A1-210ENST00000487017 CRACR2AQ9BSW2 395 aa19.1■□□□□ 0.65
COL7A1-210ENST00000487017 GOLGA8BA8MQT2 603 aa19.1■□□□□ 0.65
COL7A1-210ENST00000487017 PTPRKQ15262 1439 aa19.1■□□□□ 0.65
COL7A1-210ENST00000487017 CCT2P78371 535 aaKnown RBP19.1■□□□□ 0.65
COL7A1-210ENST00000487017 IDI1Q13907 227 aa19.1■□□□□ 0.65
COL7A1-210ENST00000487017 SPA17Q15506 151 aa19.1■□□□□ 0.65
COL7A1-210ENST00000487017 SEPT11Q9NVA2 429 aaKnown RBP19.1■□□□□ 0.65
COL7A1-210ENST00000487017 SLC12A7Q9Y666 1083 aa19.1■□□□□ 0.65
COL7A1-210ENST00000487017 SDSP20132 328 aa19.09■□□□□ 0.65
COL7A1-210ENST00000487017 TSHZ3Q63HK5 1081 aa19.09■□□□□ 0.65
COL7A1-210ENST00000487017 PPP1R42Q7Z4L9 355 aa19.09■□□□□ 0.65
COL7A1-210ENST00000487017 CNNM3Q8NE01 707 aa19.09■□□□□ 0.65
COL7A1-210ENST00000487017 TRMT1Q9NXH9 659 aaKnown RBP19.09■□□□□ 0.65
COL7A1-210ENST00000487017 KIF4BQ2VIQ3 1234 aa19.09■□□□□ 0.65
COL7A1-210ENST00000487017 MINDY4BA8MYZ0 360 aa19.09■□□□□ 0.65
COL7A1-210ENST00000487017 SEPT7Q16181 437 aaKnown RBP19.09■□□□□ 0.65
COL7A1-210ENST00000487017 IFIT5Q13325 482 aaKnown RBP19.08■□□□□ 0.65
COL7A1-210ENST00000487017 ENOX2Q16206 610 aaKnown RBP19.08■□□□□ 0.65
COL7A1-210ENST00000487017 SNX21Q969T3 373 aa19.08■□□□□ 0.65
COL7A1-210ENST00000487017 HMG20BQ9P0W2 317 aa19.08■□□□□ 0.65
COL7A1-210ENST00000487017 MAP3K2Q9Y2U5 619 aa19.08■□□□□ 0.65
COL7A1-210ENST00000487017 PRDM10Q9NQV6 1147 aa19.08■□□□□ 0.65
COL7A1-210ENST00000487017 PTCD1O75127 700 aaKnown RBP19.08■□□□□ 0.64
COL7A1-210ENST00000487017 SSRP1Q08945 709 aaKnown RBP19.08■□□□□ 0.64
COL7A1-210ENST00000487017 MAP3K12Q12852 859 aa19.08■□□□□ 0.64
COL7A1-210ENST00000487017 UGGT2Q9NYU1 1516 aa19.08■□□□□ 0.64
COL7A1-210ENST00000487017 CAVIN2O95810 425 aa19.08■□□□□ 0.64
COL7A1-210ENST00000487017 TAX1BP1Q86VP1 789 aa19.08■□□□□ 0.64
COL7A1-210ENST00000487017 USP8P40818 1118 aa19.08■□□□□ 0.64
COL7A1-210ENST00000487017 ZNF165P49910 485 aa19.08■□□□□ 0.64
COL7A1-210ENST00000487017 FKBP15Q5T1M5 1219 aa19.08■□□□□ 0.64
COL7A1-210ENST00000487017 ZSCAN22P10073 491 aaPredicted RBP19.07■□□□□ 0.64
COL7A1-210ENST00000487017 MAP9Q49MG5 647 aa19.07■□□□□ 0.64
COL7A1-210ENST00000487017 GPATCH8Q9UKJ3 1502 aaKnown RBP19.07■□□□□ 0.64
COL7A1-210ENST00000487017 NUP160Q12769 1436 aa19.07■□□□□ 0.64
COL7A1-210ENST00000487017 GOLGA8AA7E2F4 631 aa19.07■□□□□ 0.64
COL7A1-210ENST00000487017 A0A087WZG4 1122 aa19.06■□□□□ 0.64
COL7A1-210ENST00000487017 TMC6Q7Z403 805 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms