RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 ADGRB1O14514 1584 aa9.74□□□□□ -0.85
HDAC3-209ENST00000486618 NUTM2GQ5VZR2 741 aa9.73□□□□□ -0.85
HDAC3-209ENST00000486618 LARP1Q6PKG0 1096 aaKnown RBP9.73□□□□□ -0.85
HDAC3-209ENST00000486618 SLF2Q8IX21 1173 aa9.73□□□□□ -0.85
HDAC3-209ENST00000486618 ABTB2Q8N961 1025 aa9.73□□□□□ -0.85
HDAC3-209ENST00000486618 BCL11AQ9H165 835 aa9.73□□□□□ -0.85
HDAC3-209ENST00000486618 PHRF1Q9P1Y6 1649 aaKnown RBP9.73□□□□□ -0.85
HDAC3-209ENST00000486618 PLSCR1O15162 318 aa9.72□□□□□ -0.85
HDAC3-209ENST00000486618 KCNC4Q03721 635 aa9.72□□□□□ -0.85
HDAC3-209ENST00000486618 NLRP13Q86W25 1043 aa9.72□□□□□ -0.85
HDAC3-209ENST00000486618 DCAF11Q8TEB1 546 aa9.72□□□□□ -0.85
HDAC3-209ENST00000486618 CPDO75976 1380 aa9.72□□□□□ -0.85
HDAC3-209ENST00000486618 RCCD1A6NED2 376 aa9.71□□□□□ -0.86
HDAC3-209ENST00000486618 GNPATO15228 680 aa9.71□□□□□ -0.86
HDAC3-209ENST00000486618 FECHP22830 423 aa9.71□□□□□ -0.86
HDAC3-209ENST00000486618 APLP1P51693 650 aa9.71□□□□□ -0.86
HDAC3-209ENST00000486618 CDK19Q9BWU1 502 aa9.71□□□□□ -0.86
HDAC3-209ENST00000486618 TMEM134Q9H6X4 195 aa9.71□□□□□ -0.86
HDAC3-209ENST00000486618 ACEP12821 1306 aa9.71□□□□□ -0.86
HDAC3-209ENST00000486618 POLR3AO14802 1390 aaPredicted RBP9.71□□□□□ -0.86
HDAC3-209ENST00000486618 CAMTA1Q9Y6Y1 1673 aa9.71□□□□□ -0.86
HDAC3-209ENST00000486618 PLEKHG3A1L390 1219 aa9.7□□□□□ -0.86
HDAC3-209ENST00000486618 GPIHBP1Q8IV16 184 aa9.7□□□□□ -0.86
HDAC3-209ENST00000486618 NECTIN2Q92692 538 aa9.7□□□□□ -0.86
HDAC3-209ENST00000486618 OVOS2A0A0G2JMS6 1433 aa9.7□□□□□ -0.86
HDAC3-209ENST00000486618 OVOS2A0A0J9YW53 1432 aa9.7□□□□□ -0.86
HDAC3-209ENST00000486618 OVOS2Q6IE36 1432 aa9.7□□□□□ -0.86
HDAC3-209ENST00000486618 GCP02774 474 aa9.69□□□□□ -0.86
HDAC3-209ENST00000486618 DDB1Q16531 1140 aa9.69□□□□□ -0.86
HDAC3-209ENST00000486618 PXYLP1Q8TE99 480 aa9.69□□□□□ -0.86
HDAC3-209ENST00000486618 PARP4Q9UKK3 1724 aaKnown RBP9.69□□□□□ -0.86
HDAC3-209ENST00000486618 RGPD3A6NKT7 1758 aaPredicted RBP9.68□□□□□ -0.86
HDAC3-209ENST00000486618 RGPD4Q7Z3J3 1758 aa9.68□□□□□ -0.86
HDAC3-209ENST00000486618 CRB1P82279 1406 aa9.68□□□□□ -0.86
HDAC3-209ENST00000486618 USP19O94966 1318 aa9.68□□□□□ -0.86
HDAC3-209ENST00000486618 SLC4A3P48751 1232 aa9.68□□□□□ -0.86
HDAC3-209ENST00000486618 TJAP1Q5JTD0 557 aa9.68□□□□□ -0.86
HDAC3-209ENST00000486618 METTL3Q86U44 580 aaKnown RBP9.68□□□□□ -0.86
HDAC3-209ENST00000486618 SBF2Q86WG5 1849 aa9.68□□□□□ -0.86
HDAC3-209ENST00000486618 LMO7Q8WWI1 1683 aa9.67□□□□□ -0.86
HDAC3-209ENST00000486618 NRKQ7Z2Y5 1582 aa9.67□□□□□ -0.86
HDAC3-209ENST00000486618 BRD4O60885 1362 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-209ENST00000486618 CHD4Q14839 1912 aa9.67□□□□□ -0.86
HDAC3-209ENST00000486618 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.67□□□□□ -0.86
HDAC3-209ENST00000486618 OATP04181 439 aa9.67□□□□□ -0.86
HDAC3-209ENST00000486618 ZNF784Q8NCA9 323 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-209ENST00000486618 MTRQ99707 1265 aa9.67□□□□□ -0.86
HDAC3-209ENST00000486618 CDCA7Q9BWT1 371 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-209ENST00000486618 ARHGEF28Q8N1W1 1705 aaKnown RBP9.67□□□□□ -0.86
HDAC3-209ENST00000486618 COL5A2P05997 1499 aaPredicted RBP9.66□□□□□ -0.86
HDAC3-209ENST00000486618 ZBTB7CA1YPR0 619 aa9.66□□□□□ -0.86
HDAC3-209ENST00000486618 ZBTB7AO95365 584 aa9.66□□□□□ -0.86
HDAC3-209ENST00000486618 HSP90B1P14625 803 aaKnown RBP9.66□□□□□ -0.86
HDAC3-209ENST00000486618 TOM1L2Q6ZVM7 507 aa9.66□□□□□ -0.86
HDAC3-209ENST00000486618 STK32BQ9NY57 414 aa9.66□□□□□ -0.86
HDAC3-209ENST00000486618 AATKQ6ZMQ8 1374 aa9.65□□□□□ -0.86
HDAC3-209ENST00000486618 TOPAZ1Q8N9V7 1692 aa9.65□□□□□ -0.86
HDAC3-209ENST00000486618 SRPK2P78362 688 aaKnown RBP9.65□□□□□ -0.86
HDAC3-209ENST00000486618 UBE2Q2Q8WVN8 375 aa9.65□□□□□ -0.86
HDAC3-209ENST00000486618 CASZ1Q86V15 1759 aa9.65□□□□□ -0.87
HDAC3-209ENST00000486618 PEAK1Q9H792 1746 aa9.65□□□□□ -0.87
HDAC3-209ENST00000486618 SENP3-EIF4A1A0A087X0R7 540 aa9.64□□□□□ -0.87
HDAC3-209ENST00000486618 SYT17Q9BSW7 474 aa9.64□□□□□ -0.87
HDAC3-209ENST00000486618 IL21Q9HBE4 155 aa9.64□□□□□ -0.87
HDAC3-209ENST00000486618 RGS20O76081 388 aa9.63□□□□□ -0.87
HDAC3-209ENST00000486618 SLC15A2Q16348 729 aa9.63□□□□□ -0.87
HDAC3-209ENST00000486618 TXNRD1Q16881 649 aa9.63□□□□□ -0.87
HDAC3-209ENST00000486618 FHDC1Q9C0D6 1143 aaPredicted RBP9.63□□□□□ -0.87
HDAC3-209ENST00000486618 PDGFDQ9GZP0 370 aaPredicted RBP9.63□□□□□ -0.87
HDAC3-209ENST00000486618 MTFR1LQ9H019 292 aa9.63□□□□□ -0.87
HDAC3-209ENST00000486618 BCL9O00512 1426 aa9.63□□□□□ -0.87
HDAC3-209ENST00000486618 PPIP5K1Q6PFW1 1433 aa9.63□□□□□ -0.87
HDAC3-209ENST00000486618 RAB3GAP2Q9H2M9 1393 aa9.63□□□□□ -0.87
HDAC3-209ENST00000486618 WDR17Q8IZU2 1322 aa9.62□□□□□ -0.87
HDAC3-209ENST00000486618 KAT6BQ8WYB5 2073 aa9.62□□□□□ -0.87
HDAC3-209ENST00000486618 EXOC5O00471 708 aa9.62□□□□□ -0.87
HDAC3-209ENST00000486618 C1QTNF8P60827 252 aa9.62□□□□□ -0.87
HDAC3-209ENST00000486618 MARCH10Q8NA82 808 aaPredicted RBP9.62□□□□□ -0.87
HDAC3-209ENST00000486618 CHMP4AQ9BY43 222 aa9.62□□□□□ -0.87
HDAC3-209ENST00000486618 LRRC37A3O60309 1634 aa9.62□□□□□ -0.87
HDAC3-209ENST00000486618 AKAP12Q02952 1782 aa9.62□□□□□ -0.87
HDAC3-209ENST00000486618 MYOM1P52179 1685 aa9.61□□□□□ -0.87
HDAC3-209ENST00000486618 SLC10A3P09131 477 aa9.61□□□□□ -0.87
HDAC3-209ENST00000486618 CSB-PGBD3P0DP91 1061 aa9.61□□□□□ -0.87
HDAC3-209ENST00000486618 BRD2P25440 801 aaKnown RBP9.61□□□□□ -0.87
HDAC3-209ENST00000486618 COPS2P61201 443 aa9.61□□□□□ -0.87
HDAC3-209ENST00000486618 PTF1AQ7RTS3 328 aa9.61□□□□□ -0.87
HDAC3-209ENST00000486618 ZNF516Q92618 1163 aa9.61□□□□□ -0.87
HDAC3-209ENST00000486618 PRR14Q9BWN1 585 aa9.61□□□□□ -0.87
HDAC3-209ENST00000486618 KIAA1210Q9ULL0 1709 aa9.6□□□□□ -0.87
HDAC3-209ENST00000486618 CFHP08603 1231 aa9.6□□□□□ -0.87
HDAC3-209ENST00000486618 KCNH5Q8NCM2 988 aa9.6□□□□□ -0.87
HDAC3-209ENST00000486618 CARD10Q9BWT7 1032 aa9.6□□□□□ -0.87
HDAC3-209ENST00000486618 CABP1Q9NZU7 370 aa9.6□□□□□ -0.87
HDAC3-209ENST00000486618 CENPJQ9HC77 1338 aaPredicted RBP9.59□□□□□ -0.87
HDAC3-209ENST00000486618 USP6P35125 1406 aa9.59□□□□□ -0.87
HDAC3-209ENST00000486618 PHOX2BQ99453 314 aa9.59□□□□□ -0.87
HDAC3-209ENST00000486618 PCDHB3Q9Y5E6 796 aa9.59□□□□□ -0.87
HDAC3-209ENST00000486618 SLIT3O75094 1523 aa9.59□□□□□ -0.87
HDAC3-209ENST00000486618 WNK3Q9BYP7 1800 aa9.59□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms