RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 USP42Q9H9J4 1324 aaKnown RBP23.36■■□□□ 1.33
COL6A1-204ENST00000486023 MYH14Q7Z406 1995 aaKnown RBP23.36■■□□□ 1.33
COL6A1-204ENST00000486023 ADAMTS7Q9UKP4 1686 aa23.36■■□□□ 1.33
COL6A1-204ENST00000486023 HTATSF1O43719 755 aaKnown RBP23.36■■□□□ 1.33
COL6A1-204ENST00000486023 TEX13AQ9BXU3 409 aaPredicted RBP23.36■■□□□ 1.33
COL6A1-204ENST00000486023 TAF7Q15545 349 aaPredicted RBP23.35■■□□□ 1.33
COL6A1-204ENST00000486023 NFE2L2Q16236 605 aa23.35■■□□□ 1.33
COL6A1-204ENST00000486023 THUMPD2Q9BTF0 503 aaKnown RBP23.35■■□□□ 1.33
COL6A1-204ENST00000486023 A1BGP04217 495 aa23.34■■□□□ 1.33
COL6A1-204ENST00000486023 NPM2Q86SE8 214 aaKnown RBP23.34■■□□□ 1.33
COL6A1-204ENST00000486023 CCDC146Q8IYE0 955 aa23.34■■□□□ 1.33
COL6A1-204ENST00000486023 GOLGB1Q14789 3259 aaKnown RBP23.34■■□□□ 1.33
COL6A1-204ENST00000486023 VIRMAQ69YN4 1812 aaKnown RBP23.33■■□□□ 1.33
COL6A1-204ENST00000486023 COL15A1P39059 1388 aa23.33■■□□□ 1.33
COL6A1-204ENST00000486023 PRAMEF22A3QJZ6 481 aa23.33■■□□□ 1.33
COL6A1-204ENST00000486023 A0A0G2JLW4 131 aa23.32■■□□□ 1.32
COL6A1-204ENST00000486023 GRIN3BO60391 1043 aa23.32■■□□□ 1.32
COL6A1-204ENST00000486023 PIP4K2AP48426 406 aaPredicted RBP23.32■■□□□ 1.32
COL6A1-204ENST00000486023 WDR43Q15061 677 aaKnown RBP eCLIP23.32■■□□□ 1.32
COL6A1-204ENST00000486023 NARFQ9UHQ1 456 aa23.32■■□□□ 1.32
COL6A1-204ENST00000486023 USP16Q9Y5T5 823 aa23.32■■□□□ 1.32
COL6A1-204ENST00000486023 BICDL1Q6ZP65 573 aa23.31■■□□□ 1.32
COL6A1-204ENST00000486023 PRKRIP1Q9H875 184 aaPredicted RBP23.31■■□□□ 1.32
COL6A1-204ENST00000486023 TBC1D2BQ9UPU7 963 aa23.31■■□□□ 1.32
COL6A1-204ENST00000486023 RIPK4P57078 832 aa23.3■■□□□ 1.32
COL6A1-204ENST00000486023 DDR1Q08345 913 aa23.3■■□□□ 1.32
COL6A1-204ENST00000486023 NEUROD2Q15784 382 aa23.3■■□□□ 1.32
COL6A1-204ENST00000486023 RRP7AQ9Y3A4 280 aaKnown RBP23.3■■□□□ 1.32
COL6A1-204ENST00000486023 CICQ96RK0 1608 aaPredicted RBP23.3■■□□□ 1.32
COL6A1-204ENST00000486023 SNRPA1P09661 255 aaKnown RBP23.29■■□□□ 1.32
COL6A1-204ENST00000486023 EIF5P55010 431 aaKnown RBP23.29■■□□□ 1.32
COL6A1-204ENST00000486023 A0A087WZG4 1122 aa23.28■■□□□ 1.32
COL6A1-204ENST00000486023 DPEP1P16444 411 aa23.27■■□□□ 1.32
COL6A1-204ENST00000486023 TM4SF1P30408 202 aa23.27■■□□□ 1.32
COL6A1-204ENST00000486023 NFIXQ14938 502 aa23.27■■□□□ 1.32
COL6A1-204ENST00000486023 POLRMTO00411 1230 aaKnown RBP23.26■■□□□ 1.31
COL6A1-204ENST00000486023 TGFB2P61812 414 aa23.26■■□□□ 1.31
COL6A1-204ENST00000486023 BCL2L12Q9HB09 334 aa23.26■■□□□ 1.31
COL6A1-204ENST00000486023 BCS1LQ9Y276 419 aa23.26■■□□□ 1.31
COL6A1-204ENST00000486023 IL6STP40189 918 aaPredicted RBP23.25■■□□□ 1.31
COL6A1-204ENST00000486023 PNISRQ8TF01 805 aaKnown RBP23.25■■□□□ 1.31
COL6A1-204ENST00000486023 ADAMTS8Q9UP79 889 aa23.25■■□□□ 1.31
COL6A1-204ENST00000486023 C4AP0C0L4 1744 aa23.25■■□□□ 1.31
COL6A1-204ENST00000486023 UBR2Q8IWV8 1755 aa23.24■■□□□ 1.31
COL6A1-204ENST00000486023 TMPOP42166 694 aaKnown RBP23.24■■□□□ 1.31
COL6A1-204ENST00000486023 SIPA1L3O60292 1781 aaPredicted RBP23.24■■□□□ 1.31
COL6A1-204ENST00000486023 ZNF316A6NFI3 1004 aaPredicted RBP23.23■■□□□ 1.31
COL6A1-204ENST00000486023 ZNF784Q8NCA9 323 aaPredicted RBP23.23■■□□□ 1.31
COL6A1-204ENST00000486023 SERPINB2P05120 415 aa23.22■■□□□ 1.31
COL6A1-204ENST00000486023 NGEFQ8N5V2 710 aa23.22■■□□□ 1.31
COL6A1-204ENST00000486023 TSPYL4Q9UJ04 414 aa23.22■■□□□ 1.31
COL6A1-204ENST00000486023 C10orf71Q711Q0 1435 aa23.22■■□□□ 1.31
COL6A1-204ENST00000486023 CHRNA5P30532 468 aa23.21■■□□□ 1.31
COL6A1-204ENST00000486023 TBC1D9BQ66K14 1250 aa23.21■■□□□ 1.31
COL6A1-204ENST00000486023 DZIP3Q86Y13 1208 aaKnown RBP23.21■■□□□ 1.31
COL6A1-204ENST00000486023 RUNDC1Q96C34 613 aa23.21■■□□□ 1.31
COL6A1-204ENST00000486023 PXDNLA1KZ92 1463 aa23.21■■□□□ 1.31
COL6A1-204ENST00000486023 LAS1LQ9Y4W2 734 aaKnown RBP23.2■■□□□ 1.3
COL6A1-204ENST00000486023 NPHP1O15259 732 aa23.19■■□□□ 1.3
COL6A1-204ENST00000486023 EIF4A1P60842 406 aaKnown RBP23.19■■□□□ 1.3
COL6A1-204ENST00000486023 LMOD3Q0VAK6 560 aa23.19■■□□□ 1.3
COL6A1-204ENST00000486023 CCDC24Q8N4L8 307 aa23.19■■□□□ 1.3
COL6A1-204ENST00000486023 NBPF26B4DH59 902 aa23.17■■□□□ 1.3
COL6A1-204ENST00000486023 GIGYF1O75420 1035 aaPredicted RBP23.17■■□□□ 1.3
COL6A1-204ENST00000486023 CAMTA2O94983 1202 aa23.17■■□□□ 1.3
COL6A1-204ENST00000486023 NBPF10Q6P3W6 841 aaKnown RBP23.17■■□□□ 1.3
COL6A1-204ENST00000486023 ARHGAP27Q6ZUM4 889 aa23.17■■□□□ 1.3
COL6A1-204ENST00000486023 NBPF15Q8N660 670 aa23.17■■□□□ 1.3
COL6A1-204ENST00000486023 PIM2Q9P1W9 311 aa23.17■■□□□ 1.3
COL6A1-204ENST00000486023 KCNA3P22001 575 aa23.16■■□□□ 1.3
COL6A1-204ENST00000486023 SETDB2Q96T68 719 aa23.16■■□□□ 1.3
COL6A1-204ENST00000486023 MYL6BP14649 208 aa23.15■■□□□ 1.3
COL6A1-204ENST00000486023 EIF2S2P20042 333 aaKnown RBP23.14■■□□□ 1.29
COL6A1-204ENST00000486023 DALRD3Q5D0E6 543 aaKnown RBP23.14■■□□□ 1.29
COL6A1-204ENST00000486023 DLG5Q8TDM6 1919 aa23.14■■□□□ 1.29
COL6A1-204ENST00000486023 SENP3-EIF4A1A0A087X0R7 540 aa23.13■■□□□ 1.29
COL6A1-204ENST00000486023 CCDC184Q52MB2 194 aa23.13■■□□□ 1.29
COL6A1-204ENST00000486023 N4BP2Q86UW6 1770 aaPredicted RBP23.13■■□□□ 1.29
COL6A1-204ENST00000486023 FAM177BA6PVY3 158 aa23.12■■□□□ 1.29
COL6A1-204ENST00000486023 C2CD5Q86YS7 1000 aa23.12■■□□□ 1.29
COL6A1-204ENST00000486023 ZNF526Q8TF50 670 aaPredicted RBP23.12■■□□□ 1.29
COL6A1-204ENST00000486023 TRIM35Q9UPQ4 493 aa23.12■■□□□ 1.29
COL6A1-204ENST00000486023 APAF1O14727 1248 aa23.11■■□□□ 1.29
COL6A1-204ENST00000486023 ANP32CO43423 234 aa23.11■■□□□ 1.29
COL6A1-204ENST00000486023 NECTIN2Q92692 538 aa23.11■■□□□ 1.29
COL6A1-204ENST00000486023 ZNF652Q9Y2D9 606 aa23.11■■□□□ 1.29
COL6A1-204ENST00000486023 CHD4Q14839 1912 aa23.1■■□□□ 1.29
COL6A1-204ENST00000486023 H0YIN7 160 aa23.1■■□□□ 1.29
COL6A1-204ENST00000486023 PRR5LQ6MZQ0 368 aa23.09■■□□□ 1.29
COL6A1-204ENST00000486023 CNBD1Q8NA66 436 aa23.09■■□□□ 1.29
COL6A1-204ENST00000486023 CARMIL3Q8ND23 1372 aa23.09■■□□□ 1.29
COL6A1-204ENST00000486023 HLFQ16534 295 aa23.08■■□□□ 1.29
COL6A1-204ENST00000486023 NBPF5PQ86XG9 351 aaPredicted RBP23.08■■□□□ 1.29
COL6A1-204ENST00000486023 ZNF622Q969S3 477 aaKnown RBP eCLIP23.08■■□□□ 1.29
COL6A1-204ENST00000486023 NIP7Q9Y221 180 aaKnown RBP eCLIP23.08■■□□□ 1.29
COL6A1-204ENST00000486023 KIF6Q6ZMV9 814 aa23.07■■□□□ 1.28
COL6A1-204ENST00000486023 TTLL7Q6ZT98 887 aa23.07■■□□□ 1.28
COL6A1-204ENST00000486023 KIF13BQ9NQT8 1826 aa23.06■■□□□ 1.28
COL6A1-204ENST00000486023 ANXA1P04083 346 aa23.06■■□□□ 1.28
COL6A1-204ENST00000486023 ST5P78524 1137 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms