RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, human

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSA-208	ENST00000485627	DDX19B	Q9UMR2	479 aa		12.11	□□□□□ -0.47
CTSA-208	ENST00000485627	KDM6A	O15550	1401 aa	Predicted RBP	12.11	□□□□□ -0.47
CTSA-208	ENST00000485627	PTPRC	P08575	1304 aa		12.11	□□□□□ -0.47
CTSA-208	ENST00000485627	EIF2S2	P20042	333 aa	Known RBP	12.1	□□□□□ -0.47
CTSA-208	ENST00000485627	NKX1-1	Q15270	411 aa	Predicted RBP	12.1	□□□□□ -0.47
CTSA-208	ENST00000485627	ZNF790	Q6PG37	636 aa		12.1	□□□□□ -0.47
CTSA-208	ENST00000485627	NECTIN2	Q92692	538 aa		12.1	□□□□□ -0.47
CTSA-208	ENST00000485627	TNN	Q9UQP3	1299 aa		12.1	□□□□□ -0.47
CTSA-208	ENST00000485627	DISP2	A7MBM2	1401 aa		12.1	□□□□□ -0.47
CTSA-208	ENST00000485627	SPATA31A1	Q5TZJ5	1347 aa		12.1	□□□□□ -0.47
CTSA-208	ENST00000485627	SPATA31A5	Q5VU36	1347 aa		12.1	□□□□□ -0.47
CTSA-208	ENST00000485627	SPATA31A7	Q8IWB4	1347 aa		12.1	□□□□□ -0.47
CTSA-208	ENST00000485627	KCNQ3	O43525	872 aa		12.09	□□□□□ -0.47
CTSA-208	ENST00000485627	APBA3	O96018	575 aa		12.09	□□□□□ -0.47
CTSA-208	ENST00000485627	TMEM57	Q8N5G2	664 aa		12.09	□□□□□ -0.47
CTSA-208	ENST00000485627	SLC39A6	Q13433	755 aa		12.08	□□□□□ -0.48
CTSA-208	ENST00000485627	ADAMTS7	Q9UKP4	1686 aa		12.07	□□□□□ -0.48
CTSA-208	ENST00000485627	THSD7A	Q9UPZ6	1657 aa		12.07	□□□□□ -0.48
CTSA-208	ENST00000485627	GIGYF1	O75420	1035 aa	Predicted RBP	12.07	□□□□□ -0.48
CTSA-208	ENST00000485627	DDB1	Q16531	1140 aa		12.07	□□□□□ -0.48
CTSA-208	ENST00000485627	FMNL2	Q96PY5	1086 aa		12.07	□□□□□ -0.48
CTSA-208	ENST00000485627	TMOD3	Q9NYL9	352 aa		12.07	□□□□□ -0.48
CTSA-208	ENST00000485627	SCN11A	Q9UI33	1791 aa		12.07	□□□□□ -0.48
CTSA-208	ENST00000485627	KDM3B	Q7LBC6	1761 aa		12.06	□□□□□ -0.48
CTSA-208	ENST00000485627	FKBP5	Q13451	457 aa	Predicted RBP	12.06	□□□□□ -0.48
CTSA-208	ENST00000485627	BARGIN	Q6ZT62	677 aa		12.06	□□□□□ -0.48
CTSA-208	ENST00000485627	PPP1R1B	Q9UD71	204 aa	Predicted RBP	12.06	□□□□□ -0.48
CTSA-208	ENST00000485627	MRC1	P22897	1456 aa		12.06	□□□□□ -0.48
CTSA-208	ENST00000485627	ABCC4	O15439	1325 aa		12.06	□□□□□ -0.48
CTSA-208	ENST00000485627	SNRPA1	P09661	255 aa	Known RBP	12.05	□□□□□ -0.48
CTSA-208	ENST00000485627	FLII	Q13045	1269 aa		12.05	□□□□□ -0.48
CTSA-208	ENST00000485627	CENPQ	Q7L2Z9	268 aa	Predicted RBP	12.05	□□□□□ -0.48
CTSA-208	ENST00000485627	DBF4	Q9UBU7	674 aa	Predicted RBP	12.05	□□□□□ -0.48
CTSA-208	ENST00000485627	VIRMA	Q69YN4	1812 aa	Known RBP	12.04	□□□□□ -0.48
CTSA-208	ENST00000485627	TNS2	Q63HR2	1409 aa		12.04	□□□□□ -0.48
CTSA-208	ENST00000485627	SLC4A10	Q6U841	1118 aa		12.04	□□□□□ -0.48
CTSA-208	ENST00000485627	G2E3	Q7L622	706 aa		12.04	□□□□□ -0.48
CTSA-208	ENST00000485627	RWDD1	Q9H446	243 aa	Predicted RBP	12.04	□□□□□ -0.48
CTSA-208	ENST00000485627	CHPF2	Q9P2E5	772 aa		12.04	□□□□□ -0.48
CTSA-208	ENST00000485627	HEG1	Q9ULI3	1381 aa		12.04	□□□□□ -0.48
CTSA-208	ENST00000485627	NUP188	Q5SRE5	1749 aa		12.03	□□□□□ -0.48
CTSA-208	ENST00000485627	SIPA1L3	O60292	1781 aa	Predicted RBP	12.03	□□□□□ -0.48
CTSA-208	ENST00000485627	CCT4	P50991	539 aa	Known RBP	12.03	□□□□□ -0.48
CTSA-208	ENST00000485627	INTS3	Q68E01	1043 aa	Known RBP	12.03	□□□□□ -0.48
CTSA-208	ENST00000485627	FAM196A	Q6ZSG2	479 aa		12.03	□□□□□ -0.48
CTSA-208	ENST00000485627	ZNF496	Q96IT1	587 aa	Predicted RBP	12.03	□□□□□ -0.48
CTSA-208	ENST00000485627	PDGFD	Q9GZP0	370 aa	Predicted RBP	12.03	□□□□□ -0.48
CTSA-208	ENST00000485627	HYPK	Q9NX55	129 aa		12.03	□□□□□ -0.48
CTSA-208	ENST00000485627	SPDYE4	A6NLX3	237 aa		12.02	□□□□□ -0.49
CTSA-208	ENST00000485627	KCNQ2	O43526	872 aa		12.02	□□□□□ -0.49
CTSA-208	ENST00000485627	ZNF784	Q8NCA9	323 aa	Predicted RBP	12.02	□□□□□ -0.49
CTSA-208	ENST00000485627	SYTL4	Q96C24	671 aa	Predicted RBP	12.02	□□□□□ -0.49
CTSA-208	ENST00000485627	SPON1	Q9HCB6	807 aa		12.02	□□□□□ -0.49
CTSA-208	ENST00000485627	RREB1	Q92766	1687 aa		12.02	□□□□□ -0.49
CTSA-208	ENST00000485627	DDX58	O95786	925 aa	Known RBP	12.01	□□□□□ -0.49
CTSA-208	ENST00000485627	DDX21	Q9NR30	783 aa	Known RBP eCLIP	12.01	□□□□□ -0.49
CTSA-208	ENST00000485627	ZBTB40	Q9NUA8	1239 aa		12.01	□□□□□ -0.49
CTSA-208	ENST00000485627	PRAMEF22	A3QJZ6	481 aa		12	□□□□□ -0.49
CTSA-208	ENST00000485627		F6X3S4	739 aa		12	□□□□□ -0.49
CTSA-208	ENST00000485627	ZBTB7B	O15156	539 aa	Predicted RBP	12	□□□□□ -0.49
CTSA-208	ENST00000485627	PTCD1	O75127	700 aa	Known RBP	12	□□□□□ -0.49
CTSA-208	ENST00000485627	NBPF14	Q5TI25	921 aa		12	□□□□□ -0.49
CTSA-208	ENST00000485627	PIGB	Q92521	554 aa		12	□□□□□ -0.49
CTSA-208	ENST00000485627	PHAX	Q9H814	394 aa	Known RBP	12	□□□□□ -0.49
CTSA-208	ENST00000485627	SHANK3	Q9BYB0	1731 aa		12	□□□□□ -0.49
CTSA-208	ENST00000485627	ANXA1	P04083	346 aa		11.99	□□□□□ -0.49
CTSA-208	ENST00000485627	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.99	□□□□□ -0.49
CTSA-208	ENST00000485627	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.99	□□□□□ -0.49
CTSA-208	ENST00000485627	PCDHB15	Q9Y5E8	787 aa		11.99	□□□□□ -0.49
CTSA-208	ENST00000485627	USP16	Q9Y5T5	823 aa		11.99	□□□□□ -0.49
CTSA-208	ENST00000485627	KDM2B	Q8NHM5	1336 aa		11.99	□□□□□ -0.49
CTSA-208	ENST00000485627	CACNA1F	O60840	1977 aa		11.98	□□□□□ -0.49
CTSA-208	ENST00000485627	WNK3	Q9BYP7	1800 aa		11.98	□□□□□ -0.49
CTSA-208	ENST00000485627	ERBB4	Q15303	1308 aa		11.98	□□□□□ -0.49
CTSA-208	ENST00000485627	MYL6B	P14649	208 aa		11.98	□□□□□ -0.49
CTSA-208	ENST00000485627	PRIM1	P49642	420 aa	Known RBP	11.98	□□□□□ -0.49
CTSA-208	ENST00000485627	PTF1A	Q7RTS3	328 aa		11.98	□□□□□ -0.49
CTSA-208	ENST00000485627	MARCH10	Q8NA82	808 aa	Predicted RBP	11.98	□□□□□ -0.49
CTSA-208	ENST00000485627	DNAAF4	Q8WXU2	420 aa		11.98	□□□□□ -0.49
CTSA-208	ENST00000485627	RBM42	Q9BTD8	480 aa	Known RBP	11.98	□□□□□ -0.49
CTSA-208	ENST00000485627	PI4KAP2	A4QPH2	592 aa		11.97	□□□□□ -0.49
CTSA-208	ENST00000485627	ZBTB7A	O95365	584 aa		11.97	□□□□□ -0.49
CTSA-208	ENST00000485627	IGHD	P01880	384 aa		11.97	□□□□□ -0.49
CTSA-208	ENST00000485627	GNAI3	P08754	354 aa		11.97	□□□□□ -0.49
CTSA-208	ENST00000485627	AIMP1	Q12904	312 aa	Known RBP	11.97	□□□□□ -0.49
CTSA-208	ENST00000485627	VSIG10	Q8N0Z9	540 aa		11.97	□□□□□ -0.49
CTSA-208	ENST00000485627	PI4KAP1	Q8N8J0	262 aa		11.97	□□□□□ -0.49
CTSA-208	ENST00000485627	ACSBG1	Q96GR2	724 aa		11.97	□□□□□ -0.49
CTSA-208	ENST00000485627	SRCIN1	Q9C0H9	1055 aa		11.97	□□□□□ -0.49
CTSA-208	ENST00000485627	ATG3	Q9NT62	314 aa		11.97	□□□□□ -0.49
CTSA-208	ENST00000485627	ASAP1	Q9ULH1	1129 aa		11.97	□□□□□ -0.49
CTSA-208	ENST00000485627	BCL9	O00512	1426 aa		11.96	□□□□□ -0.49
CTSA-208	ENST00000485627	STARD3NL	O95772	234 aa		11.96	□□□□□ -0.49
CTSA-208	ENST00000485627	MKRN4P	Q13434	485 aa	Predicted RBP	11.96	□□□□□ -0.49
CTSA-208	ENST00000485627	HDAC1	Q13547	482 aa	Predicted RBP	11.96	□□□□□ -0.49
CTSA-208	ENST00000485627	PROSER3	Q2NL68	480 aa		11.96	□□□□□ -0.49
CTSA-208	ENST00000485627	KSR2	Q6VAB6	950 aa		11.96	□□□□□ -0.49
CTSA-208	ENST00000485627	RIC3	Q7Z5B4	369 aa		11.96	□□□□□ -0.49
CTSA-208	ENST00000485627	FBXO3	Q9UK99	471 aa		11.96	□□□□□ -0.49
CTSA-208	ENST00000485627	PXDNL	A1KZ92	1463 aa		11.95	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 7 ms