RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 DNAJC10Q8IXB1 793 aa22.72■■□□□ 1.23
SMARCD3-212ENST00000485610 USP16Q9Y5T5 823 aa22.72■■□□□ 1.23
SMARCD3-212ENST00000485610 ERBB4Q15303 1308 aa22.72■■□□□ 1.23
SMARCD3-212ENST00000485610 MRPL50Q8N5N7 158 aaKnown RBP22.71■■□□□ 1.23
SMARCD3-212ENST00000485610 RNF123Q5XPI4 1314 aa22.71■■□□□ 1.23
SMARCD3-212ENST00000485610 ATP6V1AP38606 617 aa22.7■■□□□ 1.22
SMARCD3-212ENST00000485610 CHPF2Q9P2E5 772 aa22.7■■□□□ 1.22
SMARCD3-212ENST00000485610 DBF4Q9UBU7 674 aaPredicted RBP22.7■■□□□ 1.22
SMARCD3-212ENST00000485610 STARD3NLO95772 234 aa22.69■■□□□ 1.22
SMARCD3-212ENST00000485610 RRP1P56182 461 aaKnown RBP22.69■■□□□ 1.22
SMARCD3-212ENST00000485610 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.69■■□□□ 1.22
SMARCD3-212ENST00000485610 SLC4A2P04920 1241 aa22.68■■□□□ 1.22
SMARCD3-212ENST00000485610 DDX21Q9NR30 783 aaKnown RBP eCLIP22.67■■□□□ 1.22
SMARCD3-212ENST00000485610 N4BP2Q86UW6 1770 aaPredicted RBP22.67■■□□□ 1.22
SMARCD3-212ENST00000485610 CANXP27824 592 aaKnown RBP22.66■■□□□ 1.22
SMARCD3-212ENST00000485610 ITPK1Q13572 414 aa22.66■■□□□ 1.22
SMARCD3-212ENST00000485610 CCNL1Q9UK58 526 aaPredicted RBP22.66■■□□□ 1.22
SMARCD3-212ENST00000485610 C4BP0C0L5 1744 aa22.66■■□□□ 1.22
SMARCD3-212ENST00000485610 CYP19A1P11511 503 aaPredicted RBP22.66■■□□□ 1.22
SMARCD3-212ENST00000485610 APBA3O96018 575 aa22.65■■□□□ 1.22
SMARCD3-212ENST00000485610 PDIA6Q15084 440 aa22.65■■□□□ 1.22
SMARCD3-212ENST00000485610 FRAT1Q92837 279 aaPredicted RBP22.65■■□□□ 1.22
SMARCD3-212ENST00000485610 HYPKQ9NX55 129 aa22.65■■□□□ 1.22
SMARCD3-212ENST00000485610 PLSCR1O15162 318 aa22.64■■□□□ 1.21
SMARCD3-212ENST00000485610 IPO8O15397 1037 aaKnown RBP22.64■■□□□ 1.21
SMARCD3-212ENST00000485610 PROSER3Q2NL68 480 aa22.64■■□□□ 1.21
SMARCD3-212ENST00000485610 SLC27A3Q5K4L6 730 aa22.64■■□□□ 1.21
SMARCD3-212ENST00000485610 NOB1Q9ULX3 412 aaKnown RBP22.64■■□□□ 1.21
SMARCD3-212ENST00000485610 PTPRCP08575 1304 aa22.63■■□□□ 1.21
SMARCD3-212ENST00000485610 ANXA1P04083 346 aa22.63■■□□□ 1.21
SMARCD3-212ENST00000485610 A1BGP04217 495 aa22.63■■□□□ 1.21
SMARCD3-212ENST00000485610 ZKSCAN2Q63HK3 967 aa22.63■■□□□ 1.21
SMARCD3-212ENST00000485610 ARFGEF2Q9Y6D5 1785 aa22.63■■□□□ 1.21
SMARCD3-212ENST00000485610 NUP188Q5SRE5 1749 aa22.62■■□□□ 1.21
SMARCD3-212ENST00000485610 FLIIQ13045 1269 aa22.62■■□□□ 1.21
SMARCD3-212ENST00000485610 ARHGAP45Q92619 1136 aa22.62■■□□□ 1.21
SMARCD3-212ENST00000485610 CNTNAP4Q9C0A0 1308 aa22.62■■□□□ 1.21
SMARCD3-212ENST00000485610 NBPF26B4DH59 902 aa22.61■■□□□ 1.21
SMARCD3-212ENST00000485610 PLIN1O60240 522 aa22.61■■□□□ 1.21
SMARCD3-212ENST00000485610 MYL6BP14649 208 aa22.61■■□□□ 1.21
SMARCD3-212ENST00000485610 NBPF14Q5TI25 921 aa22.61■■□□□ 1.21
SMARCD3-212ENST00000485610 NBPF10Q6P3W6 841 aaKnown RBP22.61■■□□□ 1.21
SMARCD3-212ENST00000485610 G2E3Q7L622 706 aa22.61■■□□□ 1.21
SMARCD3-212ENST00000485610 NBPF15Q8N660 670 aa22.61■■□□□ 1.21
SMARCD3-212ENST00000485610 LINC00116Q8NCU8 138 aa22.61■■□□□ 1.21
SMARCD3-212ENST00000485610 CCDC87Q9NVE4 849 aa22.61■■□□□ 1.21
SMARCD3-212ENST00000485610 UBR3Q6ZT12 1888 aa22.61■■□□□ 1.21
SMARCD3-212ENST00000485610 CRKLP46109 303 aaKnown RBP22.6■■□□□ 1.21
SMARCD3-212ENST00000485610 ATF7IPQ6VMQ6 1270 aa22.6■■□□□ 1.21
SMARCD3-212ENST00000485610 LRP10Q7Z4F1 713 aa22.6■■□□□ 1.21
SMARCD3-212ENST00000485610 HMGB2P26583 209 aaKnown RBP22.6■■□□□ 1.21
SMARCD3-212ENST00000485610 PIP4K2AP48426 406 aaPredicted RBP22.6■■□□□ 1.21
SMARCD3-212ENST00000485610 KCNQ4P56696 695 aa22.6■■□□□ 1.21
SMARCD3-212ENST00000485610 SF3B2Q13435 895 aaKnown RBP22.6■■□□□ 1.21
SMARCD3-212ENST00000485610 API5Q9BZZ5 524 aaKnown RBP22.6■■□□□ 1.21
SMARCD3-212ENST00000485610 PHAXQ9H814 394 aaKnown RBP22.6■■□□□ 1.21
SMARCD3-212ENST00000485610 ZBTB1Q9Y2K1 713 aa22.6■■□□□ 1.21
SMARCD3-212ENST00000485610 TRIM27P14373 513 aa22.59■■□□□ 1.21
SMARCD3-212ENST00000485610 TXNRD1Q16881 649 aa22.59■■□□□ 1.21
SMARCD3-212ENST00000485610 MS4A1P11836 297 aa22.58■■□□□ 1.2
SMARCD3-212ENST00000485610 FKBP5Q13451 457 aaPredicted RBP22.58■■□□□ 1.2
SMARCD3-212ENST00000485610 INTS5Q6P9B9 1019 aaKnown RBP22.58■■□□□ 1.2
SMARCD3-212ENST00000485610 LRRC4BQ9NT99 713 aa22.58■■□□□ 1.2
SMARCD3-212ENST00000485610 PXDNLA1KZ92 1463 aa22.57■■□□□ 1.2
SMARCD3-212ENST00000485610 BCORQ6W2J9 1755 aa22.57■■□□□ 1.2
SMARCD3-212ENST00000485610 NEFLP07196 543 aa22.57■■□□□ 1.2
SMARCD3-212ENST00000485610 RC3H1Q5TC82 1133 aaKnown RBP22.57■■□□□ 1.2
SMARCD3-212ENST00000485610 TUBGCP6Q96RT7 1819 aa22.57■■□□□ 1.2
SMARCD3-212ENST00000485610 IL6STP40189 918 aaPredicted RBP22.56■■□□□ 1.2
SMARCD3-212ENST00000485610 BAG6P46379 1132 aa22.56■■□□□ 1.2
SMARCD3-212ENST00000485610 PDE3AQ14432 1141 aa22.56■■□□□ 1.2
SMARCD3-212ENST00000485610 CCDC125Q86Z20 511 aa22.56■■□□□ 1.2
SMARCD3-212ENST00000485610 FTSJ3Q8IY81 847 aaKnown RBP22.56■■□□□ 1.2
SMARCD3-212ENST00000485610 XAGE3Q8WTP9 111 aa22.56■■□□□ 1.2
SMARCD3-212ENST00000485610 C4AP0C0L4 1744 aa22.56■■□□□ 1.2
SMARCD3-212ENST00000485610 ANKRD36CQ5JPF3 1778 aa22.56■■□□□ 1.2
SMARCD3-212ENST00000485610 DDX58O95786 925 aaKnown RBP22.55■■□□□ 1.2
SMARCD3-212ENST00000485610 DZIP1LQ8IYY4 767 aaKnown RBP22.55■■□□□ 1.2
SMARCD3-212ENST00000485610 ABCC4O15439 1325 aa22.55■■□□□ 1.2
SMARCD3-212ENST00000485610 NUP98P52948 1817 aa22.55■■□□□ 1.2
SMARCD3-212ENST00000485610 AFDNP55196 1824 aaKnown RBP22.55■■□□□ 1.2
SMARCD3-212ENST00000485610 COPS6Q7L5N1 327 aa22.54■■□□□ 1.2
SMARCD3-212ENST00000485610 PROM2Q8N271 834 aa22.54■■□□□ 1.2
SMARCD3-212ENST00000485610 TNNQ9UQP3 1299 aa22.54■■□□□ 1.2
SMARCD3-212ENST00000485610 SCN7AQ01118 1682 aa22.54■■□□□ 1.2
SMARCD3-212ENST00000485610 ADCY9O60503 1353 aa22.54■■□□□ 1.2
SMARCD3-212ENST00000485610 AIMP1Q12904 312 aaKnown RBP22.54■■□□□ 1.2
SMARCD3-212ENST00000485610 CLUAP1Q96AJ1 413 aa22.54■■□□□ 1.2
SMARCD3-212ENST00000485610 ZNF330Q9Y3S2 320 aaPredicted RBP22.54■■□□□ 1.2
SMARCD3-212ENST00000485610 COL15A1P39059 1388 aa22.53■■□□□ 1.2
SMARCD3-212ENST00000485610 C20orf194Q5TEA3 1177 aa22.53■■□□□ 1.2
SMARCD3-212ENST00000485610 NPM2Q86SE8 214 aaKnown RBP22.53■■□□□ 1.2
SMARCD3-212ENST00000485610 EIF5P55010 431 aaKnown RBP22.52■■□□□ 1.2
SMARCD3-212ENST00000485610 KSR2Q6VAB6 950 aa22.52■■□□□ 1.2
SMARCD3-212ENST00000485610 AK7Q96M32 723 aa22.52■■□□□ 1.2
SMARCD3-212ENST00000485610 CAMKK2Q96RR4 588 aa22.52■■□□□ 1.2
SMARCD3-212ENST00000485610 QSER1Q2KHR3 1735 aa22.52■■□□□ 1.19
SMARCD3-212ENST00000485610 RLBP1P12271 317 aa22.51■■□□□ 1.19
SMARCD3-212ENST00000485610 EN1Q05925 392 aaPredicted RBP22.51■■□□□ 1.19
SMARCD3-212ENST00000485610 PANK1Q8TE04 598 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms