RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 NPM2Q86SE8 214 aaKnown RBP10.67□□□□□ -0.7
USP54-212ENST00000480210 DNAJC10Q8IXB1 793 aa10.67□□□□□ -0.7
USP54-212ENST00000480210 AKT1S1Q96B36 256 aa10.67□□□□□ -0.7
USP54-212ENST00000480210 ZNF428Q96B54 188 aa10.67□□□□□ -0.7
USP54-212ENST00000480210 AK7Q96M32 723 aa10.67□□□□□ -0.7
USP54-212ENST00000480210 SLC4A9Q96Q91 983 aa10.67□□□□□ -0.7
USP54-212ENST00000480210 UBR3Q6ZT12 1888 aa10.67□□□□□ -0.7
USP54-212ENST00000480210 A0A087WZG4 1122 aa10.66□□□□□ -0.7
USP54-212ENST00000480210 RPS6KA4O75676 772 aa10.66□□□□□ -0.7
USP54-212ENST00000480210 CYP19A1P11511 503 aaPredicted RBP10.66□□□□□ -0.7
USP54-212ENST00000480210 SSFA2P28290 1259 aa10.66□□□□□ -0.7
USP54-212ENST00000480210 ITPK1Q13572 414 aa10.66□□□□□ -0.7
USP54-212ENST00000480210 TRMT2AQ8IZ69 625 aaKnown RBP10.66□□□□□ -0.7
USP54-212ENST00000480210 RTCBQ9Y3I0 505 aaKnown RBP10.66□□□□□ -0.7
USP54-212ENST00000480210 IL6STP40189 918 aaPredicted RBP10.65□□□□□ -0.7
USP54-212ENST00000480210 CRKLP46109 303 aaKnown RBP10.65□□□□□ -0.7
USP54-212ENST00000480210 DUSP27Q5VZP5 1158 aa10.65□□□□□ -0.7
USP54-212ENST00000480210 LINC00116Q8NCU8 138 aa10.65□□□□□ -0.7
USP54-212ENST00000480210 SLC16A10Q8TF71 515 aa10.65□□□□□ -0.7
USP54-212ENST00000480210 CCDC87Q9NVE4 849 aa10.65□□□□□ -0.7
USP54-212ENST00000480210 TFCP2L1Q9NZI6 479 aa10.65□□□□□ -0.7
USP54-212ENST00000480210 USP16Q9Y5T5 823 aa10.65□□□□□ -0.7
USP54-212ENST00000480210 FANCIQ9NVI1 1328 aa10.64□□□□□ -0.71
USP54-212ENST00000480210 RGL2O15211 777 aa10.64□□□□□ -0.71
USP54-212ENST00000480210 TRAPPC3LQ5T215 181 aa10.64□□□□□ -0.71
USP54-212ENST00000480210 CCDC30Q5VVM6 783 aa10.64□□□□□ -0.71
USP54-212ENST00000480210 TWISTNBQ3B726 338 aaPredicted RBP10.63□□□□□ -0.71
USP54-212ENST00000480210 INTS5Q6P9B9 1019 aaKnown RBP10.63□□□□□ -0.71
USP54-212ENST00000480210 DBF4Q9UBU7 674 aaPredicted RBP10.63□□□□□ -0.71
USP54-212ENST00000480210 TUBGCP6Q96RT7 1819 aa10.63□□□□□ -0.71
USP54-212ENST00000480210 GNPATO15228 680 aa10.62□□□□□ -0.71
USP54-212ENST00000480210 VAMP4O75379 141 aa10.62□□□□□ -0.71
USP54-212ENST00000480210 EIF2S2P20042 333 aaKnown RBP10.62□□□□□ -0.71
USP54-212ENST00000480210 EIF5P55010 431 aaKnown RBP10.62□□□□□ -0.71
USP54-212ENST00000480210 KCNQ4P56696 695 aa10.62□□□□□ -0.71
USP54-212ENST00000480210 EXOSC9Q06265 439 aaKnown RBP10.62□□□□□ -0.71
USP54-212ENST00000480210 HDGFL1Q5TGJ6 251 aa10.62□□□□□ -0.71
USP54-212ENST00000480210 TSR2Q969E8 191 aaKnown RBP10.62□□□□□ -0.71
USP54-212ENST00000480210 STK31Q9BXU1 1019 aa10.62□□□□□ -0.71
USP54-212ENST00000480210 SPINK5Q9NQ38 1064 aaPredicted RBP10.62□□□□□ -0.71
USP54-212ENST00000480210 DDX21Q9NR30 783 aaKnown RBP eCLIP10.62□□□□□ -0.71
USP54-212ENST00000480210 HYPKQ9NX55 129 aa10.62□□□□□ -0.71
USP54-212ENST00000480210 SENP3-EIF4A1A0A087X0R7 540 aa10.61□□□□□ -0.71
USP54-212ENST00000480210 A1BGP04217 495 aa10.61□□□□□ -0.71
USP54-212ENST00000480210 RFC4P35249 363 aa10.61□□□□□ -0.71
USP54-212ENST00000480210 C8orf58Q8NAV2 365 aa10.61□□□□□ -0.71
USP54-212ENST00000480210 ZBTB1Q9Y2K1 713 aa10.61□□□□□ -0.71
USP54-212ENST00000480210 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.6□□□□□ -0.71
USP54-212ENST00000480210 ZPR1O75312 459 aa10.6□□□□□ -0.71
USP54-212ENST00000480210 CANXP27824 592 aaKnown RBP10.6□□□□□ -0.71
USP54-212ENST00000480210 ZNF827Q17R98 1081 aa10.6□□□□□ -0.71
USP54-212ENST00000480210 ALDH1L2Q3SY69 923 aa10.6□□□□□ -0.71
USP54-212ENST00000480210 CDCA7LQ96GN5 454 aa10.6□□□□□ -0.71
USP54-212ENST00000480210 ANO8Q9HCE9 1232 aaPredicted RBP10.6□□□□□ -0.71
USP54-212ENST00000480210 NARFQ9UHQ1 456 aa10.6□□□□□ -0.71
USP54-212ENST00000480210 PNPLA7Q6ZV29 1317 aa10.59□□□□□ -0.71
USP54-212ENST00000480210 PRAMEF22A3QJZ6 481 aa10.59□□□□□ -0.71
USP54-212ENST00000480210 ERVV-1B6SEH8 477 aa10.59□□□□□ -0.71
USP54-212ENST00000480210 ELL2O00472 640 aaPredicted RBP10.59□□□□□ -0.71
USP54-212ENST00000480210 R3HDM1Q15032 1099 aaKnown RBP10.59□□□□□ -0.71
USP54-212ENST00000480210 CLEC4GQ6UXB4 293 aa10.59□□□□□ -0.71
USP54-212ENST00000480210 NLGN1Q8N2Q7 840 aa10.59□□□□□ -0.71
USP54-212ENST00000480210 TSPYL6Q8N831 410 aa10.59□□□□□ -0.71
USP54-212ENST00000480210 ARHGEF1Q92888 912 aaKnown RBP10.59□□□□□ -0.71
USP54-212ENST00000480210 COL15A1P39059 1388 aa10.59□□□□□ -0.71
USP54-212ENST00000480210 NUP98P52948 1817 aa10.58□□□□□ -0.72
USP54-212ENST00000480210 NBPF26B4DH59 902 aa10.58□□□□□ -0.72
USP54-212ENST00000480210 DDX58O95786 925 aaKnown RBP10.58□□□□□ -0.72
USP54-212ENST00000480210 PDIA6Q15084 440 aa10.58□□□□□ -0.72
USP54-212ENST00000480210 KRT24Q2M2I5 525 aa10.58□□□□□ -0.72
USP54-212ENST00000480210 NBPF10Q6P3W6 841 aaKnown RBP10.58□□□□□ -0.72
USP54-212ENST00000480210 COL23A1Q86Y22 540 aaPredicted RBP10.58□□□□□ -0.72
USP54-212ENST00000480210 NBPF15Q8N660 670 aa10.58□□□□□ -0.72
USP54-212ENST00000480210 ZNF652Q9Y2D9 606 aa10.58□□□□□ -0.72
USP54-212ENST00000480210 C4AP0C0L4 1744 aa10.58□□□□□ -0.72
USP54-212ENST00000480210 COL24A1Q17RW2 1714 aa10.58□□□□□ -0.72
USP54-212ENST00000480210 CASZ1Q86V15 1759 aa10.57□□□□□ -0.72
USP54-212ENST00000480210 MSH5O43196 834 aa10.57□□□□□ -0.72
USP54-212ENST00000480210 BRPF1P55201 1214 aaPredicted RBP10.57□□□□□ -0.72
USP54-212ENST00000480210 HSP90AB3PQ58FF7 597 aa10.57□□□□□ -0.72
USP54-212ENST00000480210 KIF6Q6ZMV9 814 aa10.57□□□□□ -0.72
USP54-212ENST00000480210 DZIP3Q86Y13 1208 aaKnown RBP10.57□□□□□ -0.72
USP54-212ENST00000480210 MTFR1LQ9H019 292 aa10.57□□□□□ -0.72
USP54-212ENST00000480210 USP42Q9H9J4 1324 aaKnown RBP10.57□□□□□ -0.72
USP54-212ENST00000480210 PHF14O94880 888 aa10.56□□□□□ -0.72
USP54-212ENST00000480210 SLC4A2P04920 1241 aa10.56□□□□□ -0.72
USP54-212ENST00000480210 MYL6BP14649 208 aa10.56□□□□□ -0.72
USP54-212ENST00000480210 CHPF2Q9P2E5 772 aa10.56□□□□□ -0.72
USP54-212ENST00000480210 MAP3K15Q6ZN16 1313 aa10.56□□□□□ -0.72
USP54-212ENST00000480210 BCORQ6W2J9 1755 aa10.55□□□□□ -0.72
USP54-212ENST00000480210 POLD1P28340 1107 aa10.55□□□□□ -0.72
USP54-212ENST00000480210 ANKRD13DQ6ZTN6 518 aa10.55□□□□□ -0.72
USP54-212ENST00000480210 COPS6Q7L5N1 327 aa10.55□□□□□ -0.72
USP54-212ENST00000480210 LRP10Q7Z4F1 713 aa10.55□□□□□ -0.72
USP54-212ENST00000480210 PLBD2Q8NHP8 589 aa10.55□□□□□ -0.72
USP54-212ENST00000480210 ARXQ96QS3 562 aa10.55□□□□□ -0.72
USP54-212ENST00000480210 SPON1Q9HCB6 807 aa10.55□□□□□ -0.72
USP54-212ENST00000480210 ZNF330Q9Y3S2 320 aaPredicted RBP10.55□□□□□ -0.72
USP54-212ENST00000480210 PSDA5PKW4 1024 aaPredicted RBP10.54□□□□□ -0.72
USP54-212ENST00000480210 CAMTA2O94983 1202 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms