RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 TMF1P82094 1093 aa13.59□□□□□ -0.23
GPNMB-211ENST00000479625 FSTL1Q12841 308 aa13.59□□□□□ -0.23
GPNMB-211ENST00000479625 TRAPPC3LQ5T215 181 aa13.59□□□□□ -0.23
GPNMB-211ENST00000479625 PHF12Q96QT6 1004 aa13.59□□□□□ -0.23
GPNMB-211ENST00000479625 RNF181Q9P0P0 153 aa13.59□□□□□ -0.23
GPNMB-211ENST00000479625 PPM1GO15355 546 aaPredicted RBP13.58□□□□□ -0.24
GPNMB-211ENST00000479625 NLGN1Q8N2Q7 840 aa13.58□□□□□ -0.24
GPNMB-211ENST00000479625 ARHGEF1Q92888 912 aaKnown RBP13.58□□□□□ -0.24
GPNMB-211ENST00000479625 RRAGCQ9HB90 399 aa13.58□□□□□ -0.24
GPNMB-211ENST00000479625 PRELPP51888 382 aa13.57□□□□□ -0.24
GPNMB-211ENST00000479625 DCAF5Q96JK2 942 aa13.57□□□□□ -0.24
GPNMB-211ENST00000479625 PARP3Q9Y6F1 533 aa13.57□□□□□ -0.24
GPNMB-211ENST00000479625 KDM2BQ8NHM5 1336 aa13.57□□□□□ -0.24
GPNMB-211ENST00000479625 KDM6AO15550 1401 aaPredicted RBP13.56□□□□□ -0.24
GPNMB-211ENST00000479625 IFNL2Q8IZJ0 200 aa13.56□□□□□ -0.24
GPNMB-211ENST00000479625 EYA1Q99502 592 aa13.56□□□□□ -0.24
GPNMB-211ENST00000479625 TSPYL2Q9H2G4 693 aaPredicted RBP13.56□□□□□ -0.24
GPNMB-211ENST00000479625 CNTNAP4Q9C0A0 1308 aa13.56□□□□□ -0.24
GPNMB-211ENST00000479625 NRXN2Q9P2S2 1712 aa13.56□□□□□ -0.24
GPNMB-211ENST00000479625 SCN11AQ9UI33 1791 aa13.55□□□□□ -0.24
GPNMB-211ENST00000479625 CACNA1SQ13698 1873 aa13.55□□□□□ -0.24
GPNMB-211ENST00000479625 CHRNA5P30532 468 aa13.55□□□□□ -0.24
GPNMB-211ENST00000479625 RFC4P35249 363 aa13.55□□□□□ -0.24
GPNMB-211ENST00000479625 SRP68Q9UHB9 627 aaKnown RBP13.55□□□□□ -0.24
GPNMB-211ENST00000479625 HSPA1AP0DMV8 641 aaKnown RBP13.54□□□□□ -0.24
GPNMB-211ENST00000479625 HSPA1BP0DMV9 641 aaKnown RBP13.54□□□□□ -0.24
GPNMB-211ENST00000479625 RASSF7Q02833 373 aa13.54□□□□□ -0.24
GPNMB-211ENST00000479625 DDR1Q08345 913 aa13.54□□□□□ -0.24
GPNMB-211ENST00000479625 DALRD3Q5D0E6 543 aaKnown RBP13.54□□□□□ -0.24
GPNMB-211ENST00000479625 CARD14Q9BXL6 1004 aa13.54□□□□□ -0.24
GPNMB-211ENST00000479625 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.54□□□□□ -0.24
GPNMB-211ENST00000479625 PIM2Q9P1W9 311 aa13.54□□□□□ -0.24
GPNMB-211ENST00000479625 DICER1Q9UPY3 1922 aaKnown RBP13.53□□□□□ -0.24
GPNMB-211ENST00000479625 RPS6KA4O75676 772 aa13.53□□□□□ -0.24
GPNMB-211ENST00000479625 SMC1BQ8NDV3 1235 aa13.53□□□□□ -0.24
GPNMB-211ENST00000479625 WASHC2AQ641Q2 1341 aa13.53□□□□□ -0.24
GPNMB-211ENST00000479625 COL11A2P13942 1736 aaPredicted RBP13.53□□□□□ -0.24
GPNMB-211ENST00000479625 GALR2O43603 387 aaPredicted RBP13.52□□□□□ -0.25
GPNMB-211ENST00000479625 CLCN6P51797 869 aa13.52□□□□□ -0.25
GPNMB-211ENST00000479625 RC3H1Q5TC82 1133 aaKnown RBP13.52□□□□□ -0.25
GPNMB-211ENST00000479625 ANKRD31Q8N7Z5 1873 aa13.52□□□□□ -0.25
GPNMB-211ENST00000479625 USP42Q9H9J4 1324 aaKnown RBP13.51□□□□□ -0.25
GPNMB-211ENST00000479625 EIF4A2Q14240 407 aaKnown RBP13.5□□□□□ -0.25
GPNMB-211ENST00000479625 FER1L6Q2WGJ9 1857 aa13.49□□□□□ -0.25
GPNMB-211ENST00000479625 CRKLP46109 303 aaKnown RBP13.49□□□□□ -0.25
GPNMB-211ENST00000479625 ERVV-2B6SEH9 535 aa13.48□□□□□ -0.25
GPNMB-211ENST00000479625 POLRMTO00411 1230 aaKnown RBP13.48□□□□□ -0.25
GPNMB-211ENST00000479625 SLC24A1O60721 1099 aa13.48□□□□□ -0.25
GPNMB-211ENST00000479625 PTCD1O75127 700 aaKnown RBP13.48□□□□□ -0.25
GPNMB-211ENST00000479625 DCBLD2Q96PD2 775 aa13.48□□□□□ -0.25
GPNMB-211ENST00000479625 POLKQ9UBT6 870 aa13.48□□□□□ -0.25
GPNMB-211ENST00000479625 FBXO3Q9UK99 471 aa13.48□□□□□ -0.25
GPNMB-211ENST00000479625 CARMIL3Q8ND23 1372 aa13.46□□□□□ -0.25
GPNMB-211ENST00000479625 ZC3H4Q9UPT8 1303 aaKnown RBP13.46□□□□□ -0.25
GPNMB-211ENST00000479625 POTEIP0CG38 1075 aa13.46□□□□□ -0.25
GPNMB-211ENST00000479625 TNNT2P45379 298 aaPredicted RBP13.46□□□□□ -0.25
GPNMB-211ENST00000479625 CABP4P57796 275 aa13.46□□□□□ -0.25
GPNMB-211ENST00000479625 SCN7AQ01118 1682 aa13.46□□□□□ -0.26
GPNMB-211ENST00000479625 UBR2Q8IWV8 1755 aa13.45□□□□□ -0.26
GPNMB-211ENST00000479625 ARFGEF2Q9Y6D5 1785 aa13.45□□□□□ -0.26
GPNMB-211ENST00000479625 GLTPD2A6NH11 291 aa13.45□□□□□ -0.26
GPNMB-211ENST00000479625 ZNF530Q6P9A1 599 aaPredicted RBP13.45□□□□□ -0.26
GPNMB-211ENST00000479625 RASEFQ8IZ41 740 aa13.45□□□□□ -0.26
GPNMB-211ENST00000479625 ZBTB47Q9UFB7 747 aaPredicted RBP13.45□□□□□ -0.26
GPNMB-211ENST00000479625 HSP90AB1P08238 724 aaKnown RBP13.44□□□□□ -0.26
GPNMB-211ENST00000479625 VEGFAP15692 232 aaPredicted RBP13.44□□□□□ -0.26
GPNMB-211ENST00000479625 LMNB1P20700 586 aa13.44□□□□□ -0.26
GPNMB-211ENST00000479625 TM4SF1P30408 202 aa13.44□□□□□ -0.26
GPNMB-211ENST00000479625 USPL1Q5W0Q7 1092 aa13.44□□□□□ -0.26
GPNMB-211ENST00000479625 POTECB2RU33 542 aa13.43□□□□□ -0.26
GPNMB-211ENST00000479625 NFKBIEO00221 500 aa13.43□□□□□ -0.26
GPNMB-211ENST00000479625 INTS5Q6P9B9 1019 aaKnown RBP13.43□□□□□ -0.26
GPNMB-211ENST00000479625 AEBP1Q8IUX7 1158 aa13.43□□□□□ -0.26
GPNMB-211ENST00000479625 SOS1Q07889 1333 aaPredicted RBP13.42□□□□□ -0.26
GPNMB-211ENST00000479625 CDCA8Q53HL2 280 aa13.42□□□□□ -0.26
GPNMB-211ENST00000479625 NFATC2IPQ8NCF5 419 aa13.42□□□□□ -0.26
GPNMB-211ENST00000479625 MKRN1Q9UHC7 482 aaKnown RBP13.42□□□□□ -0.26
GPNMB-211ENST00000479625 COL15A1P39059 1388 aa13.42□□□□□ -0.26
GPNMB-211ENST00000479625 MRC1P22897 1456 aa13.42□□□□□ -0.26
GPNMB-211ENST00000479625 MTHFSP49914 203 aa13.41□□□□□ -0.26
GPNMB-211ENST00000479625 NFIXQ14938 502 aa13.41□□□□□ -0.26
GPNMB-211ENST00000479625 PLEKHO1Q53GL0 409 aaPredicted RBP13.41□□□□□ -0.26
GPNMB-211ENST00000479625 DNAJC10Q8IXB1 793 aa13.41□□□□□ -0.26
GPNMB-211ENST00000479625 MS4A3Q96HJ5 214 aa13.41□□□□□ -0.26
GPNMB-211ENST00000479625 ZPR1O75312 459 aa13.4□□□□□ -0.26
GPNMB-211ENST00000479625 POTEJP0CG39 1038 aa13.4□□□□□ -0.26
GPNMB-211ENST00000479625 BCORQ6W2J9 1755 aa13.4□□□□□ -0.26
GPNMB-211ENST00000479625 SLX4Q8IY92 1834 aa13.39□□□□□ -0.27
GPNMB-211ENST00000479625 FOXN1O15353 648 aa13.39□□□□□ -0.27
GPNMB-211ENST00000479625 C1orf141Q5JVX7 400 aa13.39□□□□□ -0.27
GPNMB-211ENST00000479625 C2CD5Q86YS7 1000 aa13.39□□□□□ -0.27
GPNMB-211ENST00000479625 BCL2L12Q9HB09 334 aa13.39□□□□□ -0.27
GPNMB-211ENST00000479625 SCN4AP35499 1836 aa13.39□□□□□ -0.27
GPNMB-211ENST00000479625 TTLL6Q8N841 843 aa13.38□□□□□ -0.27
GPNMB-211ENST00000479625 ZBTB1Q9Y2K1 713 aa13.38□□□□□ -0.27
GPNMB-211ENST00000479625 SERPINB2P05120 415 aa13.37□□□□□ -0.27
GPNMB-211ENST00000479625 AMOTQ4VCS5 1084 aa13.37□□□□□ -0.27
GPNMB-211ENST00000479625 POLR3GLQ9BT43 218 aa13.37□□□□□ -0.27
GPNMB-211ENST00000479625 NARFQ9UHQ1 456 aa13.37□□□□□ -0.27
GPNMB-211ENST00000479625 ADAMTSL1Q8N6G6 1762 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms