RNA–Protein interactions for RNA: ENST00000479168.5

LIMS3-202, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 2

Gene LIMS3, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-202ENST00000479168 POLD1P28340 1107 aa19.07■□□□□ 0.64
LIMS3-202ENST00000479168 RFC4P35249 363 aa19.07■□□□□ 0.64
LIMS3-202ENST00000479168 EIF4A1P60842 406 aaKnown RBP19.07■□□□□ 0.64
LIMS3-202ENST00000479168 A0A087WZG4 1122 aa19.06■□□□□ 0.64
LIMS3-202ENST00000479168 KCNQ3O43525 872 aa19.06■□□□□ 0.64
LIMS3-202ENST00000479168 INTS5Q6P9B9 1019 aaKnown RBP19.06■□□□□ 0.64
LIMS3-202ENST00000479168 CHMP4AQ9BY43 222 aa19.06■□□□□ 0.64
LIMS3-202ENST00000479168 SOS1Q07889 1333 aaPredicted RBP19.05■□□□□ 0.64
LIMS3-202ENST00000479168 IL16Q14005 1332 aa19.05■□□□□ 0.64
LIMS3-202ENST00000479168 MIS18AQ9NYP9 233 aa19.05■□□□□ 0.64
LIMS3-202ENST00000479168 PPP1R1BQ9UD71 204 aaPredicted RBP19.05■□□□□ 0.64
LIMS3-202ENST00000479168 LAS1LQ9Y4W2 734 aaKnown RBP19.05■□□□□ 0.64
LIMS3-202ENST00000479168 KDM3BQ7LBC6 1761 aa19.04■□□□□ 0.64
LIMS3-202ENST00000479168 GIGYF1O75420 1035 aaPredicted RBP19.04■□□□□ 0.64
LIMS3-202ENST00000479168 HOXB7P09629 217 aa19.04■□□□□ 0.64
LIMS3-202ENST00000479168 IL6STP40189 918 aaPredicted RBP19.04■□□□□ 0.64
LIMS3-202ENST00000479168 WWC1Q8IX03 1113 aa19.04■□□□□ 0.64
LIMS3-202ENST00000479168 ZBTB1Q9Y2K1 713 aa19.04■□□□□ 0.64
LIMS3-202ENST00000479168 COL15A1P39059 1388 aa19.04■□□□□ 0.64
LIMS3-202ENST00000479168 ERBB4Q15303 1308 aa19.03■□□□□ 0.64
LIMS3-202ENST00000479168 PDGFDQ9GZP0 370 aaPredicted RBP19.03■□□□□ 0.64
LIMS3-202ENST00000479168 UBR3Q6ZT12 1888 aa19.03■□□□□ 0.64
LIMS3-202ENST00000479168 ZPR1O75312 459 aa19.02■□□□□ 0.64
LIMS3-202ENST00000479168 WDR63Q8IWG1 891 aa19.02■□□□□ 0.64
LIMS3-202ENST00000479168 NLGN1Q8N2Q7 840 aa19.02■□□□□ 0.64
LIMS3-202ENST00000479168 ARHGEF1Q92888 912 aaKnown RBP19.02■□□□□ 0.64
LIMS3-202ENST00000479168 ZNF853P0CG23 659 aa19.01■□□□□ 0.63
LIMS3-202ENST00000479168 CANXP27824 592 aaKnown RBP19.01■□□□□ 0.63
LIMS3-202ENST00000479168 ATF5Q9Y2D1 282 aaPredicted RBP19.01■□□□□ 0.63
LIMS3-202ENST00000479168 USP42Q9H9J4 1324 aaKnown RBP19■□□□□ 0.63
LIMS3-202ENST00000479168 TUBGCP6Q96RT7 1819 aa19■□□□□ 0.63
LIMS3-202ENST00000479168 EIF5P55010 431 aaKnown RBP19■□□□□ 0.63
LIMS3-202ENST00000479168 AMIGO3Q86WK7 504 aa19■□□□□ 0.63
LIMS3-202ENST00000479168 MIER1Q8N108 512 aa19■□□□□ 0.63
LIMS3-202ENST00000479168 USP16Q9Y5T5 823 aa19■□□□□ 0.63
LIMS3-202ENST00000479168 SRCAPQ6ZRS2 3230 aa19■□□□□ 0.63
LIMS3-202ENST00000479168 RGL2O15211 777 aa18.99■□□□□ 0.63
LIMS3-202ENST00000479168 PTGER2P43116 358 aa18.99■□□□□ 0.63
LIMS3-202ENST00000479168 MBIPQ9NS73 344 aa18.99■□□□□ 0.63
LIMS3-202ENST00000479168 SGIP1Q9BQI5 828 aa18.98■□□□□ 0.63
LIMS3-202ENST00000479168 NARFQ9UHQ1 456 aa18.98■□□□□ 0.63
LIMS3-202ENST00000479168 LAMB4A4D0S4 1761 aa18.97■□□□□ 0.63
LIMS3-202ENST00000479168 A1BGP04217 495 aa18.97■□□□□ 0.63
LIMS3-202ENST00000479168 ARXQ96QS3 562 aa18.97■□□□□ 0.63
LIMS3-202ENST00000479168 MYH16Q9H6N6 1097 aa18.97■□□□□ 0.63
LIMS3-202ENST00000479168 ZNF330Q9Y3S2 320 aaPredicted RBP18.97■□□□□ 0.63
LIMS3-202ENST00000479168 GYS1P13807 737 aa18.96■□□□□ 0.63
LIMS3-202ENST00000479168 MSL1Q68DK7 614 aa18.96■□□□□ 0.63
LIMS3-202ENST00000479168 ZNF652Q9Y2D9 606 aa18.96■□□□□ 0.63
LIMS3-202ENST00000479168 PRAMEF22A3QJZ6 481 aa18.95■□□□□ 0.62
LIMS3-202ENST00000479168 HDGFL1Q5TGJ6 251 aa18.94■□□□□ 0.62
LIMS3-202ENST00000479168 DZIP3Q86Y13 1208 aaKnown RBP18.94■□□□□ 0.62
LIMS3-202ENST00000479168 SALL2Q9Y467 1007 aaPredicted RBP18.94■□□□□ 0.62
LIMS3-202ENST00000479168 MYH14Q7Z406 1995 aaKnown RBP18.93■□□□□ 0.62
LIMS3-202ENST00000479168 DUSP27Q5VZP5 1158 aa18.93■□□□□ 0.62
LIMS3-202ENST00000479168 KIF6Q6ZMV9 814 aa18.93■□□□□ 0.62
LIMS3-202ENST00000479168 SMIM5Q71RC9 77 aa18.93■□□□□ 0.62
LIMS3-202ENST00000479168 MMP10P09238 476 aa18.92■□□□□ 0.62
LIMS3-202ENST00000479168 EIF2S2P20042 333 aaKnown RBP18.92■□□□□ 0.62
LIMS3-202ENST00000479168 GOLGA2Q08379 1002 aa18.92■□□□□ 0.62
LIMS3-202ENST00000479168 USPL1Q5W0Q7 1092 aa18.92■□□□□ 0.62
LIMS3-202ENST00000479168 SRP68Q9UHB9 627 aaKnown RBP18.92■□□□□ 0.62
LIMS3-202ENST00000479168 PARP3Q9Y6F1 533 aa18.92■□□□□ 0.62
LIMS3-202ENST00000479168 C4AP0C0L4 1744 aa18.91■□□□□ 0.62
LIMS3-202ENST00000479168 COL24A1Q17RW2 1714 aa18.91■□□□□ 0.62
LIMS3-202ENST00000479168 NBPF26B4DH59 902 aa18.91■□□□□ 0.62
LIMS3-202ENST00000479168 NBPF10Q6P3W6 841 aaKnown RBP18.91■□□□□ 0.62
LIMS3-202ENST00000479168 CLEC4GQ6UXB4 293 aa18.91■□□□□ 0.62
LIMS3-202ENST00000479168 NBPF15Q8N660 670 aa18.91■□□□□ 0.62
LIMS3-202ENST00000479168 DBF4Q9UBU7 674 aaPredicted RBP18.91■□□□□ 0.62
LIMS3-202ENST00000479168 FANCIQ9NVI1 1328 aa18.91■□□□□ 0.62
LIMS3-202ENST00000479168 DDX21Q9NR30 783 aaKnown RBP eCLIP18.9■□□□□ 0.62
LIMS3-202ENST00000479168 ZNF521Q96K83 1311 aa18.9■□□□□ 0.62
LIMS3-202ENST00000479168 ERVV-1B6SEH8 477 aa18.89■□□□□ 0.61
LIMS3-202ENST00000479168 E9PSI1 815 aa18.89■□□□□ 0.61
LIMS3-202ENST00000479168 FKBP8Q14318 412 aa18.89■□□□□ 0.61
LIMS3-202ENST00000479168 CCDC30Q5VVM6 783 aa18.89■□□□□ 0.61
LIMS3-202ENST00000479168 TSR2Q969E8 191 aaKnown RBP18.89■□□□□ 0.61
LIMS3-202ENST00000479168 TBC1D2BQ9UPU7 963 aa18.89■□□□□ 0.61
LIMS3-202ENST00000479168 CD2APQ9Y5K6 639 aa18.89■□□□□ 0.61
LIMS3-202ENST00000479168 SCN7AQ01118 1682 aa18.89■□□□□ 0.61
LIMS3-202ENST00000479168 CAMTA2O94983 1202 aa18.88■□□□□ 0.61
LIMS3-202ENST00000479168 MYL6BP14649 208 aa18.88■□□□□ 0.61
LIMS3-202ENST00000479168 KRT24Q2M2I5 525 aa18.88■□□□□ 0.61
LIMS3-202ENST00000479168 HYPKQ9NX55 129 aa18.88■□□□□ 0.61
LIMS3-202ENST00000479168 SENP3-EIF4A1A0A087X0R7 540 aa18.87■□□□□ 0.61
LIMS3-202ENST00000479168 PIP4K2AP48426 406 aaPredicted RBP18.87■□□□□ 0.61
LIMS3-202ENST00000479168 CARMIL3Q8ND23 1372 aa18.87■□□□□ 0.61
LIMS3-202ENST00000479168 FHDC1Q9C0D6 1143 aaPredicted RBP18.87■□□□□ 0.61
LIMS3-202ENST00000479168 MAP3K15Q6ZN16 1313 aa18.86■□□□□ 0.61
LIMS3-202ENST00000479168 DCAF8L1A6NGE4 600 aa18.86■□□□□ 0.61
LIMS3-202ENST00000479168 TWISTNBQ3B726 338 aaPredicted RBP18.86■□□□□ 0.61
LIMS3-202ENST00000479168 STK31Q9BXU1 1019 aa18.86■□□□□ 0.61
LIMS3-202ENST00000479168 NFIXQ14938 502 aa18.85■□□□□ 0.61
LIMS3-202ENST00000479168 PDIA6Q15084 440 aa18.85■□□□□ 0.61
LIMS3-202ENST00000479168 KLHL34Q8N239 644 aa18.85■□□□□ 0.61
LIMS3-202ENST00000479168 C8orf58Q8NAV2 365 aa18.85■□□□□ 0.61
LIMS3-202ENST00000479168 SETDB2Q96T68 719 aa18.85■□□□□ 0.61
LIMS3-202ENST00000479168 BCL2L12Q9HB09 334 aa18.85■□□□□ 0.61
LIMS3-202ENST00000479168 CHPF2Q9P2E5 772 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms