RNA–Protein interactions for RNA: ENST00000478999.1

VPS45-208, Transcript of vacuolar protein sorting 45 homolog, human

TSL 2

Gene VPS45, Length 468 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS45-208	ENST00000478999	KCNA3	P22001	575 aa		10.88	□□□□□ -0.67
VPS45-208	ENST00000478999	SIK1	P57059	783 aa		10.88	□□□□□ -0.67
VPS45-208	ENST00000478999	SMC1B	Q8NDV3	1235 aa		10.88	□□□□□ -0.67
VPS45-208	ENST00000478999	SCN11A	Q9UI33	1791 aa		10.88	□□□□□ -0.67
VPS45-208	ENST00000478999	CFAP53	Q96M91	514 aa		10.87	□□□□□ -0.67
VPS45-208	ENST00000478999	RNF181	Q9P0P0	153 aa		10.87	□□□□□ -0.67
VPS45-208	ENST00000478999	DLEC1	Q9Y238	1755 aa		10.86	□□□□□ -0.67
VPS45-208	ENST00000478999		E9PSI1	815 aa		10.86	□□□□□ -0.67
VPS45-208	ENST00000478999	MORC1	Q86VD1	984 aa		10.86	□□□□□ -0.67
VPS45-208	ENST00000478999	TRMT2A	Q8IZ69	625 aa	Known RBP	10.86	□□□□□ -0.67
VPS45-208	ENST00000478999	AFDN	P55196	1824 aa	Known RBP	10.86	□□□□□ -0.67
VPS45-208	ENST00000478999	TCERG1	O14776	1098 aa	Known RBP	10.85	□□□□□ -0.67
VPS45-208	ENST00000478999	DUSP27	Q5VZP5	1158 aa		10.85	□□□□□ -0.67
VPS45-208	ENST00000478999	DCAF5	Q96JK2	942 aa		10.85	□□□□□ -0.67
VPS45-208	ENST00000478999	CCDC87	Q9NVE4	849 aa		10.85	□□□□□ -0.67
VPS45-208	ENST00000478999	TMOD3	Q9NYL9	352 aa		10.85	□□□□□ -0.67
VPS45-208	ENST00000478999	ASAP1	Q9ULH1	1129 aa		10.85	□□□□□ -0.67
VPS45-208	ENST00000478999	DICER1	Q9UPY3	1922 aa	Known RBP	10.85	□□□□□ -0.67
VPS45-208	ENST00000478999	MS4A1	P11836	297 aa		10.84	□□□□□ -0.67
VPS45-208	ENST00000478999	ATP6V1A	P38606	617 aa		10.84	□□□□□ -0.67
VPS45-208	ENST00000478999	SLFN5	Q08AF3	891 aa		10.84	□□□□□ -0.67
VPS45-208	ENST00000478999	IFNL2	Q8IZJ0	200 aa		10.84	□□□□□ -0.67
VPS45-208	ENST00000478999	NLGN1	Q8N2Q7	840 aa		10.84	□□□□□ -0.67
VPS45-208	ENST00000478999	CDCA7L	Q96GN5	454 aa		10.84	□□□□□ -0.67
VPS45-208	ENST00000478999	EYA1	Q99502	592 aa		10.84	□□□□□ -0.67
VPS45-208	ENST00000478999	POLK	Q9UBT6	870 aa		10.84	□□□□□ -0.67
VPS45-208	ENST00000478999	KDR	P35968	1356 aa		10.84	□□□□□ -0.67
VPS45-208	ENST00000478999	GYS1	P13807	737 aa		10.83	□□□□□ -0.68
VPS45-208	ENST00000478999	AAMP	Q13685	434 aa		10.83	□□□□□ -0.68
VPS45-208	ENST00000478999	NKX1-1	Q15270	411 aa	Predicted RBP	10.83	□□□□□ -0.68
VPS45-208	ENST00000478999	CCDC27	Q2M243	656 aa		10.83	□□□□□ -0.68
VPS45-208	ENST00000478999	ANP32E	Q9BTT0	268 aa		10.83	□□□□□ -0.68
VPS45-208	ENST00000478999	PIM2	Q9P1W9	311 aa		10.83	□□□□□ -0.68
VPS45-208	ENST00000478999	KDM6A	O15550	1401 aa	Predicted RBP	10.83	□□□□□ -0.68
VPS45-208	ENST00000478999	NCAPD2	Q15021	1401 aa		10.83	□□□□□ -0.68
VPS45-208	ENST00000478999	ADAMTS7	Q9UKP4	1686 aa		10.82	□□□□□ -0.68
VPS45-208	ENST00000478999	EIF4A2	Q14240	407 aa	Known RBP	10.82	□□□□□ -0.68
VPS45-208	ENST00000478999	DALRD3	Q5D0E6	543 aa	Known RBP	10.82	□□□□□ -0.68
VPS45-208	ENST00000478999	TRAPPC3L	Q5T215	181 aa		10.82	□□□□□ -0.68
VPS45-208	ENST00000478999	ARHGEF1	Q92888	912 aa	Known RBP	10.82	□□□□□ -0.68
VPS45-208	ENST00000478999	RUNDC1	Q96C34	613 aa		10.82	□□□□□ -0.68
VPS45-208	ENST00000478999	RTCB	Q9Y3I0	505 aa	Known RBP	10.82	□□□□□ -0.68
VPS45-208	ENST00000478999	PARP3	Q9Y6F1	533 aa		10.82	□□□□□ -0.68
VPS45-208	ENST00000478999	RASSF7	Q02833	373 aa		10.81	□□□□□ -0.68
VPS45-208	ENST00000478999	EXOC6	Q8TAG9	804 aa		10.81	□□□□□ -0.68
VPS45-208	ENST00000478999	SLC4A9	Q96Q91	983 aa		10.81	□□□□□ -0.68
VPS45-208	ENST00000478999	ATG3	Q9NT62	314 aa		10.81	□□□□□ -0.68
VPS45-208	ENST00000478999	FOXN1	O15353	648 aa		10.8	□□□□□ -0.68
VPS45-208	ENST00000478999	HSP90AB1	P08238	724 aa	Known RBP	10.8	□□□□□ -0.68
VPS45-208	ENST00000478999	PHKG2	P15735	406 aa		10.8	□□□□□ -0.68
VPS45-208	ENST00000478999	CHRNA5	P30532	468 aa		10.8	□□□□□ -0.68
VPS45-208	ENST00000478999	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.8	□□□□□ -0.68
VPS45-208	ENST00000478999	C1orf141	Q5JVX7	400 aa		10.8	□□□□□ -0.68
VPS45-208	ENST00000478999	WDR63	Q8IWG1	891 aa		10.8	□□□□□ -0.68
VPS45-208	ENST00000478999	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
VPS45-208	ENST00000478999	SALL2	Q9Y467	1007 aa	Predicted RBP	10.8	□□□□□ -0.68
VPS45-208	ENST00000478999	TJP1	Q07157	1748 aa		10.8	□□□□□ -0.68
VPS45-208	ENST00000478999	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.8	□□□□□ -0.68
VPS45-208	ENST00000478999	NRXN2	Q9P2S2	1712 aa		10.79	□□□□□ -0.68
VPS45-208	ENST00000478999	GLTPD2	A6NH11	291 aa		10.79	□□□□□ -0.68
VPS45-208	ENST00000478999	APAF1	O14727	1248 aa		10.79	□□□□□ -0.68
VPS45-208	ENST00000478999	VEGFA	P15692	232 aa	Predicted RBP	10.79	□□□□□ -0.68
VPS45-208	ENST00000478999	ZNF530	Q6P9A1	599 aa	Predicted RBP	10.79	□□□□□ -0.68
VPS45-208	ENST00000478999	POTEH	Q6S545	545 aa		10.79	□□□□□ -0.68
VPS45-208	ENST00000478999	CACNA1S	Q13698	1873 aa		10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	FER1L6	Q2WGJ9	1857 aa		10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	POTEC	B2RU33	542 aa		10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	CT47B1	P0C2W7	299 aa	Predicted RBP	10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	RFC4	P35249	363 aa		10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	DDR1	Q08345	913 aa		10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	PDE3A	Q14432	1141 aa		10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	AMOT	Q4VCS5	1084 aa		10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	RBM42	Q9BTD8	480 aa	Known RBP	10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	PNN	Q9H307	717 aa	Known RBP	10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	MKRN1	Q9UHC7	482 aa	Known RBP	10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	COL3A1	P02461	1466 aa	Predicted RBP	10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	CNTNAP4	Q9C0A0	1308 aa		10.78	□□□□□ -0.68
VPS45-208	ENST00000478999	RPS6KA4	O75676	772 aa		10.77	□□□□□ -0.69
VPS45-208	ENST00000478999	ANP32A	P39687	249 aa	Known RBP	10.77	□□□□□ -0.69
VPS45-208	ENST00000478999	CABP4	P57796	275 aa		10.77	□□□□□ -0.69
VPS45-208	ENST00000478999	FAM161A	Q3B820	660 aa		10.77	□□□□□ -0.69
VPS45-208	ENST00000478999	RC3H1	Q5TC82	1133 aa	Known RBP	10.77	□□□□□ -0.69
VPS45-208	ENST00000478999	CENPQ	Q7L2Z9	268 aa	Predicted RBP	10.77	□□□□□ -0.69
VPS45-208	ENST00000478999	PRDM10	Q9NQV6	1147 aa		10.77	□□□□□ -0.69
VPS45-208	ENST00000478999	LMNB1	P20700	586 aa		10.76	□□□□□ -0.69
VPS45-208	ENST00000478999	MTHFS	P49914	203 aa		10.76	□□□□□ -0.69
VPS45-208	ENST00000478999	WWC1	Q8IX03	1113 aa		10.76	□□□□□ -0.69
VPS45-208	ENST00000478999	CRBN	Q96SW2	442 aa		10.76	□□□□□ -0.69
VPS45-208	ENST00000478999	PCDH10	Q9P2E7	1040 aa		10.76	□□□□□ -0.69
VPS45-208	ENST00000478999	SRP68	Q9UHB9	627 aa	Known RBP	10.76	□□□□□ -0.69
VPS45-208	ENST00000478999	ANKRD31	Q8N7Z5	1873 aa		10.76	□□□□□ -0.69
VPS45-208	ENST00000478999	ERVV-2	B6SEH9	535 aa		10.75	□□□□□ -0.69
VPS45-208	ENST00000478999	MAPK8IP2	Q13387	824 aa	Predicted RBP	10.75	□□□□□ -0.69
VPS45-208	ENST00000478999	SULT6B1	Q6IMI4	303 aa		10.75	□□□□□ -0.69
VPS45-208	ENST00000478999	ERICH6	Q7L0X2	663 aa		10.75	□□□□□ -0.69
VPS45-208	ENST00000478999	CCDC146	Q8IYE0	955 aa		10.75	□□□□□ -0.69
VPS45-208	ENST00000478999	MYH16	Q9H6N6	1097 aa		10.75	□□□□□ -0.69
VPS45-208	ENST00000478999	CREBZF	Q9NS37	354 aa		10.75	□□□□□ -0.69
VPS45-208	ENST00000478999	USP42	Q9H9J4	1324 aa	Known RBP	10.75	□□□□□ -0.69
VPS45-208	ENST00000478999	POLRMT	O00411	1230 aa	Known RBP	10.74	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms