RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 STXBP4Q6ZWJ1 553 aa15.34■□□□□ 0.05
COL6A3-209ENST00000472056 GPATCH11Q8N954 259 aa15.34■□□□□ 0.05
COL6A3-209ENST00000472056 KIF21AQ7Z4S6 1674 aa15.34■□□□□ 0.05
COL6A3-209ENST00000472056 TTC31Q49AM3 519 aaPredicted RBP15.34■□□□□ 0.05
COL6A3-209ENST00000472056 SMAP1Q8IYB5 467 aaPredicted RBP15.34■□□□□ 0.05
COL6A3-209ENST00000472056 SELENOOQ9BVL4 669 aa15.34■□□□□ 0.05
COL6A3-209ENST00000472056 SYNJ2O15056 1496 aa15.34■□□□□ 0.05
COL6A3-209ENST00000472056 SH2D4BQ5SQS7 431 aa15.34■□□□□ 0.05
COL6A3-209ENST00000472056 C16orf45Q96MC5 204 aaPredicted RBP15.34■□□□□ 0.05
COL6A3-209ENST00000472056 LIMCH1Q9UPQ0 1083 aa15.34■□□□□ 0.05
COL6A3-209ENST00000472056 RMND1Q9NWS8 449 aa15.34■□□□□ 0.05
COL6A3-209ENST00000472056 CTAGE9A4FU28 777 aa15.34■□□□□ 0.05
COL6A3-209ENST00000472056 SEC63Q9UGP8 760 aaKnown RBP15.33■□□□□ 0.05
COL6A3-209ENST00000472056 A0A087WZG4 1122 aa15.33■□□□□ 0.04
COL6A3-209ENST00000472056 TMEM266Q2M3C6 531 aa15.33■□□□□ 0.04
COL6A3-209ENST00000472056 CCDC110Q8TBZ0 833 aa15.33■□□□□ 0.04
COL6A3-209ENST00000472056 AKAP2Q9Y2D5 859 aa15.33■□□□□ 0.04
COL6A3-209ENST00000472056 LRPPRCP42704 1394 aaKnown RBP15.33■□□□□ 0.04
COL6A3-209ENST00000472056 CCDC12Q8WUD4 166 aaPredicted RBP15.33■□□□□ 0.04
COL6A3-209ENST00000472056 SPAG1Q07617 926 aa15.33■□□□□ 0.04
COL6A3-209ENST00000472056 LRRC45Q96CN5 670 aa15.33■□□□□ 0.04
COL6A3-209ENST00000472056 JAKMIP1Q96N16 626 aaKnown RBP15.32■□□□□ 0.04
COL6A3-209ENST00000472056 MINK1Q8N4C8 1332 aaPredicted RBP15.32■□□□□ 0.04
COL6A3-209ENST00000472056 ADCY5O95622 1261 aa15.32■□□□□ 0.04
COL6A3-209ENST00000472056 ZFYP08048 801 aaPredicted RBP15.32■□□□□ 0.04
COL6A3-209ENST00000472056 GTF2F1P35269 517 aaKnown RBP eCLIP15.32■□□□□ 0.04
COL6A3-209ENST00000472056 ZMYND15Q9H091 742 aa15.32■□□□□ 0.04
COL6A3-209ENST00000472056 CEP83Q9Y592 693 aa15.32■□□□□ 0.04
COL6A3-209ENST00000472056 BCL11BQ9C0K0 894 aaPredicted RBP15.32■□□□□ 0.04
COL6A3-209ENST00000472056 FANCD2Q9BXW9 1451 aa15.32■□□□□ 0.04
COL6A3-209ENST00000472056 KIF14Q15058 1648 aa15.32■□□□□ 0.04
COL6A3-209ENST00000472056 BMP2KLQ5H9B9 411 aa15.32■□□□□ 0.04
COL6A3-209ENST00000472056 IFT74Q96LB3 600 aa15.32■□□□□ 0.04
COL6A3-209ENST00000472056 STIM2Q9P246 746 aa15.32■□□□□ 0.04
COL6A3-209ENST00000472056 NSD2O96028 1365 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 FCHSD2O94868 740 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 KIF4AO95239 1232 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 PTPRGP23470 1445 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 NEBLO76041 1014 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 LRSAM1Q6UWE0 723 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 POTEDQ86YR6 584 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 KIF5BP33176 963 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 C8orf76Q96K31 380 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 TSNARE1Q96NA8 513 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 CCDC77Q9BR77 488 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 CCDC113Q9H0I3 377 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 HLTFQ14527 1009 aaKnown RBP eCLIP15.31■□□□□ 0.04
COL6A3-209ENST00000472056 LARP1Q6PKG0 1096 aaKnown RBP15.31■□□□□ 0.04
COL6A3-209ENST00000472056 CCDC97Q96F63 343 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-209ENST00000472056 RAI14Q9P0K7 980 aa15.31■□□□□ 0.04
COL6A3-209ENST00000472056 CCDC178Q5BJE1 867 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 RNF41Q9H4P4 317 aaPredicted RBP15.3■□□□□ 0.04
COL6A3-209ENST00000472056 RALGAPBQ86X10 1494 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 PTPRCP08575 1304 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 C11orf95C9JLR9 678 aaPredicted RBP15.3■□□□□ 0.04
COL6A3-209ENST00000472056 NOL3O60936 208 aaKnown RBP15.3■□□□□ 0.04
COL6A3-209ENST00000472056 ZWINTO95229 277 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 FBF1Q8TES7 1133 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 GOLGA1Q92805 767 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 TSGA10Q9BZW7 698 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 NCAPD3P42695 1498 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 CROCCP2Q86T23 111 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 USP25Q9UHP3 1055 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 USP37Q86T82 979 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 HDGFL1Q5TGJ6 251 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 RASSF4Q9H2L5 321 aa15.3■□□□□ 0.04
COL6A3-209ENST00000472056 C10orf67Q8IYJ2 551 aa15.29■□□□□ 0.04
COL6A3-209ENST00000472056 ATP2A1O14983 1001 aa15.29■□□□□ 0.04
COL6A3-209ENST00000472056 OGFRQ9NZT2 677 aa15.29■□□□□ 0.04
COL6A3-209ENST00000472056 FGD5Q6ZNL6 1462 aa15.29■□□□□ 0.04
COL6A3-209ENST00000472056 C9orf84Q5VXU9 1444 aa15.29■□□□□ 0.04
COL6A3-209ENST00000472056 ZNF165P49910 485 aa15.29■□□□□ 0.04
COL6A3-209ENST00000472056 CCDC121Q6ZUS5 278 aa15.29■□□□□ 0.04
COL6A3-209ENST00000472056 CC2D2AQ9P2K1 1620 aa15.29■□□□□ 0.04
COL6A3-209ENST00000472056 ATP5DP30049 168 aa15.29■□□□□ 0.04
COL6A3-209ENST00000472056 CYLC1P35663 651 aaPredicted RBP15.29■□□□□ 0.04
COL6A3-209ENST00000472056 CTTNBP2Q8WZ74 1663 aa15.29■□□□□ 0.04
COL6A3-209ENST00000472056 PPP4R3AQ6IN85 833 aa15.29■□□□□ 0.04
COL6A3-209ENST00000472056 GOPCQ9HD26 462 aa15.28■□□□□ 0.04
COL6A3-209ENST00000472056 CCDC6Q16204 474 aa15.28■□□□□ 0.04
COL6A3-209ENST00000472056 GBP6Q6ZN66 633 aa15.28■□□□□ 0.04
COL6A3-209ENST00000472056 SMC6Q96SB8 1091 aa15.28■□□□□ 0.04
COL6A3-209ENST00000472056 CLUL1Q15846 466 aa15.28■□□□□ 0.04
COL6A3-209ENST00000472056 ATL3Q6DD88 541 aa15.28■□□□□ 0.04
COL6A3-209ENST00000472056 EHMT1Q9H9B1 1298 aa15.28■□□□□ 0.04
COL6A3-209ENST00000472056 CNNM1Q9NRU3 951 aa15.28■□□□□ 0.04
COL6A3-209ENST00000472056 OTUD6BQ8N6M0 293 aa15.28■□□□□ 0.04
COL6A3-209ENST00000472056 TDRD9Q8NDG6 1382 aaKnown RBP15.28■□□□□ 0.04
COL6A3-209ENST00000472056 GABPB1Q06547 395 aaPredicted RBP15.27■□□□□ 0.04
COL6A3-209ENST00000472056 KIAA0753Q2KHM9 967 aa15.27■□□□□ 0.04
COL6A3-209ENST00000472056 CNNM3Q8NE01 707 aa15.27■□□□□ 0.04
COL6A3-209ENST00000472056 ATP2B1P20020 1258 aa15.27■□□□□ 0.04
COL6A3-209ENST00000472056 ACTN2P35609 894 aa15.27■□□□□ 0.04
COL6A3-209ENST00000472056 KCNG4Q8TDN1 519 aa15.27■□□□□ 0.04
COL6A3-209ENST00000472056 LMBR1Q8WVP7 490 aa15.27■□□□□ 0.04
COL6A3-209ENST00000472056 TNPO1Q92973 898 aaKnown RBP15.27■□□□□ 0.04
COL6A3-209ENST00000472056 ZKSCAN5Q9Y2L8 839 aa15.27■□□□□ 0.04
COL6A3-209ENST00000472056 MYH10P35580 1976 aa15.27■□□□□ 0.04
COL6A3-209ENST00000472056 IPO4Q8TEX9 1081 aaKnown RBP15.27■□□□□ 0.03
COL6A3-209ENST00000472056 JPH4Q96JJ6 628 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms