RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-209ENST00000472044 WDR44Q5JSH3 913 aa6.88□□□□□ -1.31
PTCD3-209ENST00000472044 SLC27A3Q5K4L6 730 aa6.88□□□□□ -1.31
PTCD3-209ENST00000472044 TBCELQ5QJ74 424 aa6.88□□□□□ -1.31
PTCD3-209ENST00000472044 TMEM214Q6NUQ4 689 aaKnown RBP6.88□□□□□ -1.31
PTCD3-209ENST00000472044 CAPN12Q6ZSI9 719 aa6.88□□□□□ -1.31
PTCD3-209ENST00000472044 SND1Q7KZF4 910 aaKnown RBP eCLIP6.88□□□□□ -1.31
PTCD3-209ENST00000472044 TRIM46Q7Z4K8 759 aa6.88□□□□□ -1.31
PTCD3-209ENST00000472044 ZDHHC1Q8WTX9 485 aa6.88□□□□□ -1.31
PTCD3-209ENST00000472044 CHMP7Q8WUX9 453 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-209ENST00000472044 CABP1Q9NZU7 370 aa6.88□□□□□ -1.31
PTCD3-209ENST00000472044 SOS2Q07890 1332 aaPredicted RBP6.87□□□□□ -1.31
PTCD3-209ENST00000472044 SOWAHDA6NJG2 315 aa6.87□□□□□ -1.31
PTCD3-209ENST00000472044 RNF217Q8TC41 542 aa6.87□□□□□ -1.31
PTCD3-209ENST00000472044 L3MBTL2Q969R5 705 aa6.87□□□□□ -1.31
PTCD3-209ENST00000472044 VTI1AQ96AJ9 217 aa6.87□□□□□ -1.31
PTCD3-209ENST00000472044 MYO19Q96H55 970 aa6.87□□□□□ -1.31
PTCD3-209ENST00000472044 MKNK1Q9BUB5 465 aa6.87□□□□□ -1.31
PTCD3-209ENST00000472044 POLMQ9NP87 494 aaPredicted RBP6.87□□□□□ -1.31
PTCD3-209ENST00000472044 SEPT3Q9UH03 358 aa6.87□□□□□ -1.31
PTCD3-209ENST00000472044 SF3B2Q13435 895 aaKnown RBP6.86□□□□□ -1.31
PTCD3-209ENST00000472044 C4orf17Q53FE4 359 aa6.86□□□□□ -1.31
PTCD3-209ENST00000472044 GNASQ5JWF2 1037 aa6.86□□□□□ -1.31
PTCD3-209ENST00000472044 C6orf118Q5T5N4 469 aa6.86□□□□□ -1.31
PTCD3-209ENST00000472044 GTF3C2Q8WUA4 911 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-209ENST00000472044 IRX2Q9BZI1 471 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-209ENST00000472044 TTLL8A6PVC2 850 aa6.85□□□□□ -1.31
PTCD3-209ENST00000472044 ICMTO60725 284 aa6.85□□□□□ -1.31
PTCD3-209ENST00000472044 NPR3P17342 541 aa6.85□□□□□ -1.31
PTCD3-209ENST00000472044 TMCO4Q5TGY1 634 aa6.85□□□□□ -1.31
PTCD3-209ENST00000472044 C1orf53Q5VUE5 145 aa6.85□□□□□ -1.31
PTCD3-209ENST00000472044 C16orf46Q6P387 395 aa6.85□□□□□ -1.31
PTCD3-209ENST00000472044 LYSMD3Q7Z3D4 306 aa6.85□□□□□ -1.31
PTCD3-209ENST00000472044 HELQQ8TDG4 1101 aa6.85□□□□□ -1.31
PTCD3-209ENST00000472044 ZFP42Q96MM3 310 aa6.85□□□□□ -1.31
PTCD3-209ENST00000472044 AAASQ9NRG9 546 aa6.85□□□□□ -1.31
PTCD3-209ENST00000472044 DNMT3AQ9Y6K1 912 aaPredicted RBP6.85□□□□□ -1.31
PTCD3-209ENST00000472044 BMP1P13497 986 aa6.84□□□□□ -1.31
PTCD3-209ENST00000472044 FKBP4Q02790 459 aaKnown RBP eCLIP6.84□□□□□ -1.31
PTCD3-209ENST00000472044 NAA30Q147X3 362 aaPredicted RBP6.84□□□□□ -1.31
PTCD3-209ENST00000472044 SH3PXD2AQ5TCZ1 1133 aa6.84□□□□□ -1.31
PTCD3-209ENST00000472044 ALDH16A1Q8IZ83 802 aa6.84□□□□□ -1.31
PTCD3-209ENST00000472044 QTRT2Q9H974 415 aaKnown RBP6.84□□□□□ -1.31
PTCD3-209ENST00000472044 ZDHHC3Q9NYG2 299 aa6.84□□□□□ -1.31
PTCD3-209ENST00000472044 CCDC9Q9Y3X0 531 aaKnown RBP6.84□□□□□ -1.31
PTCD3-209ENST00000472044 POU4F2Q12837 409 aa6.83□□□□□ -1.32
PTCD3-209ENST00000472044 ECM1Q16610 540 aa6.83□□□□□ -1.32
PTCD3-209ENST00000472044 RTN1Q16799 776 aa6.83□□□□□ -1.32
PTCD3-209ENST00000472044 COX20Q5RI15 118 aa6.83□□□□□ -1.32
PTCD3-209ENST00000472044 NBPF10Q6P3W6 841 aaKnown RBP6.83□□□□□ -1.32
PTCD3-209ENST00000472044 C7orf43Q8WVR3 580 aa6.83□□□□□ -1.32
PTCD3-209ENST00000472044 SAP130Q9H0E3 1048 aa6.83□□□□□ -1.32
PTCD3-209ENST00000472044 ATP13A2Q9NQ11 1180 aa6.83□□□□□ -1.32
PTCD3-209ENST00000472044 ZNF232Q9UNY5 417 aa6.83□□□□□ -1.32
PTCD3-209ENST00000472044 PARP3Q9Y6F1 533 aa6.83□□□□□ -1.32
PTCD3-209ENST00000472044 ABL1P00519 1130 aa6.82□□□□□ -1.32
PTCD3-209ENST00000472044 PRICKLE2Q7Z3G6 844 aa6.82□□□□□ -1.32
PTCD3-209ENST00000472044 PHACTR1Q9C0D0 580 aa6.82□□□□□ -1.32
PTCD3-209ENST00000472044 LRFN2Q9ULH4 789 aa6.82□□□□□ -1.32
PTCD3-209ENST00000472044 HCN4Q9Y3Q4 1203 aa6.82□□□□□ -1.32
PTCD3-209ENST00000472044 GPC6Q9Y625 555 aaPredicted RBP6.82□□□□□ -1.32
PTCD3-209ENST00000472044 TXLNAP40222 546 aa6.81□□□□□ -1.32
PTCD3-209ENST00000472044 PLA2G4AP47712 749 aa6.81□□□□□ -1.32
PTCD3-209ENST00000472044 ZNF211Q13398 564 aaPredicted RBP6.81□□□□□ -1.32
PTCD3-209ENST00000472044 CCDC27Q2M243 656 aa6.81□□□□□ -1.32
PTCD3-209ENST00000472044 NBPF1Q3BBV0 1214 aa6.81□□□□□ -1.32
PTCD3-209ENST00000472044 A0A1B0GTH6 734 aa6.8□□□□□ -1.32
PTCD3-209ENST00000472044 H3BRB1 525 aa6.8□□□□□ -1.32
PTCD3-209ENST00000472044 TNFRSF10BO14763 440 aa6.8□□□□□ -1.32
PTCD3-209ENST00000472044 ST8SIA5O15466 376 aa6.8□□□□□ -1.32
PTCD3-209ENST00000472044 FAM13AO94988 1023 aa6.8□□□□□ -1.32
PTCD3-209ENST00000472044 BRD2P25440 801 aaKnown RBP6.8□□□□□ -1.32
PTCD3-209ENST00000472044 MFAP1P55081 439 aaKnown RBP6.8□□□□□ -1.32
PTCD3-209ENST00000472044 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.8□□□□□ -1.32
PTCD3-209ENST00000472044 C11orf91Q3C1V1 193 aa6.8□□□□□ -1.32
PTCD3-209ENST00000472044 GLYCTKQ8IVS8 523 aa6.8□□□□□ -1.32
PTCD3-209ENST00000472044 TUT1Q9H6E5 874 aaKnown RBP6.8□□□□□ -1.32
PTCD3-209ENST00000472044 STIM2Q9P246 746 aa6.8□□□□□ -1.32
PTCD3-209ENST00000472044 DACH1Q9UI36 760 aa6.8□□□□□ -1.32
PTCD3-209ENST00000472044 DNMT3LQ9UJW3 386 aa6.8□□□□□ -1.32
PTCD3-209ENST00000472044 FIGNL2A6NMB9 653 aa6.79□□□□□ -1.32
PTCD3-209ENST00000472044 PHKA2P46019 1235 aa6.79□□□□□ -1.32
PTCD3-209ENST00000472044 ARHGAP4P98171 946 aa6.79□□□□□ -1.32
PTCD3-209ENST00000472044 MTMR3Q13615 1198 aa6.79□□□□□ -1.32
PTCD3-209ENST00000472044 HIF1AQ16665 826 aa6.79□□□□□ -1.32
PTCD3-209ENST00000472044 NGLY1Q96IV0 654 aa6.79□□□□□ -1.32
PTCD3-209ENST00000472044 ANO2Q9NQ90 1003 aa6.79□□□□□ -1.32
PTCD3-209ENST00000472044 DYRK1BQ9Y463 629 aa6.79□□□□□ -1.32
PTCD3-209ENST00000472044 TATP17735 454 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-209ENST00000472044 ATP4AP20648 1035 aa6.78□□□□□ -1.32
PTCD3-209ENST00000472044 ABTB2Q8N961 1025 aa6.78□□□□□ -1.32
PTCD3-209ENST00000472044 KIFC2Q96AC6 838 aa6.78□□□□□ -1.32
PTCD3-209ENST00000472044 AIDAQ96BJ3 306 aa6.78□□□□□ -1.32
PTCD3-209ENST00000472044 SENP2Q9HC62 589 aa6.78□□□□□ -1.32
PTCD3-209ENST00000472044 TIMMDC1Q9NPL8 285 aa6.78□□□□□ -1.32
PTCD3-209ENST00000472044 RHOQP17081 205 aa6.77□□□□□ -1.33
PTCD3-209ENST00000472044 MPSTP25325 297 aa6.77□□□□□ -1.33
PTCD3-209ENST00000472044 DGKZQ13574 1117 aa6.77□□□□□ -1.33
PTCD3-209ENST00000472044 ALKBH2Q6NS38 261 aa6.77□□□□□ -1.33
PTCD3-209ENST00000472044 CRISPLD1Q9H336 500 aa6.77□□□□□ -1.33
PTCD3-209ENST00000472044 BIN2Q9UBW5 565 aaPredicted RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms