RNA–Protein interactions for RNA: ENST00000469694.5

GPC1-208, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 2,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-208ENST00000469694 UQCRHLA0A096LP55 91 aa17.02■□□□□ 0.32
GPC1-208ENST00000469694 PRAMEF22A3QJZ6 481 aa17.02■□□□□ 0.32
GPC1-208ENST00000469694 UQCRHP07919 91 aa17.02■□□□□ 0.32
GPC1-208ENST00000469694 KIF2CQ99661 725 aa17.02■□□□□ 0.32
GPC1-208ENST00000469694 PRDM11Q9NQV5 511 aa17.02■□□□□ 0.32
GPC1-208ENST00000469694 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.02■□□□□ 0.32
GPC1-208ENST00000469694 DDX49Q9Y6V7 483 aaKnown RBP17.02■□□□□ 0.32
GPC1-208ENST00000469694 ZNF445P59923 1031 aa17.02■□□□□ 0.31
GPC1-208ENST00000469694 MEGF6O75095 1541 aa17.01■□□□□ 0.31
GPC1-208ENST00000469694 SSFA2P28290 1259 aa17.01■□□□□ 0.31
GPC1-208ENST00000469694 ANKRD45Q5TZF3 282 aa17.01■□□□□ 0.31
GPC1-208ENST00000469694 SOS2Q07890 1332 aaPredicted RBP17.01■□□□□ 0.31
GPC1-208ENST00000469694 PDLIM2Q96JY6 352 aa17■□□□□ 0.31
GPC1-208ENST00000469694 DYNC1I1O14576 645 aa17■□□□□ 0.31
GPC1-208ENST00000469694 CD2BP2O95400 341 aaKnown RBP17■□□□□ 0.31
GPC1-208ENST00000469694 FOXD4L1Q9NU39 408 aa17■□□□□ 0.31
GPC1-208ENST00000469694 K7ELQ4 463 aaPredicted RBP16.99■□□□□ 0.31
GPC1-208ENST00000469694 SLC39A6Q13433 755 aa16.99■□□□□ 0.31
GPC1-208ENST00000469694 CHPF2Q9P2E5 772 aa16.99■□□□□ 0.31
GPC1-208ENST00000469694 BAG4O95429 457 aaKnown RBP16.99■□□□□ 0.31
GPC1-208ENST00000469694 NUCB1Q02818 461 aa16.99■□□□□ 0.31
GPC1-208ENST00000469694 TATP17735 454 aaPredicted RBP16.99■□□□□ 0.31
GPC1-208ENST00000469694 APBB1O00213 710 aa16.98■□□□□ 0.31
GPC1-208ENST00000469694 CHD1LQ86WJ1 897 aa16.98■□□□□ 0.31
GPC1-208ENST00000469694 CHMP4BQ9H444 224 aaKnown RBP16.98■□□□□ 0.31
GPC1-208ENST00000469694 BABAM1Q9NWV8 329 aa16.98■□□□□ 0.31
GPC1-208ENST00000469694 CSPP1Q1MSJ5 1256 aa16.97■□□□□ 0.31
GPC1-208ENST00000469694 COL18A1P39060 1754 aa16.97■□□□□ 0.31
GPC1-208ENST00000469694 NFATC2IPQ8NCF5 419 aa16.97■□□□□ 0.31
GPC1-208ENST00000469694 STRN4Q9NRL3 753 aa16.97■□□□□ 0.31
GPC1-208ENST00000469694 CYP27B1O15528 508 aa16.96■□□□□ 0.31
GPC1-208ENST00000469694 PHKG2P15735 406 aa16.96■□□□□ 0.31
GPC1-208ENST00000469694 CEP85Q6P2H3 762 aa16.96■□□□□ 0.31
GPC1-208ENST00000469694 TOM1L2Q6ZVM7 507 aa16.96■□□□□ 0.31
GPC1-208ENST00000469694 ZKSCAN5Q9Y2L8 839 aa16.96■□□□□ 0.31
GPC1-208ENST00000469694 LMO7Q8WWI1 1683 aa16.96■□□□□ 0.3
GPC1-208ENST00000469694 ATP10DQ9P241 1426 aa16.96■□□□□ 0.3
GPC1-208ENST00000469694 RBSNQ9H1K0 784 aa16.95■□□□□ 0.3
GPC1-208ENST00000469694 CPDO75976 1380 aa16.95■□□□□ 0.3
GPC1-208ENST00000469694 MCM5P33992 734 aa16.95■□□□□ 0.3
GPC1-208ENST00000469694 PROSER3Q2NL68 480 aa16.95■□□□□ 0.3
GPC1-208ENST00000469694 CAMTA1Q9Y6Y1 1673 aa16.95■□□□□ 0.3
GPC1-208ENST00000469694 A0A0U1RQG5 324 aaPredicted RBP16.95■□□□□ 0.3
GPC1-208ENST00000469694 ZSCAN23Q3MJ62 389 aa16.95■□□□□ 0.3
GPC1-208ENST00000469694 KDM6AO15550 1401 aaPredicted RBP16.94■□□□□ 0.3
GPC1-208ENST00000469694 CCT4P50991 539 aaKnown RBP16.94■□□□□ 0.3
GPC1-208ENST00000469694 SPG7Q9UQ90 795 aa16.94■□□□□ 0.3
GPC1-208ENST00000469694 CRYBG1Q9Y4K1 1723 aa16.93■□□□□ 0.3
GPC1-208ENST00000469694 FAM208AQ9UK61 1670 aaKnown RBP16.93■□□□□ 0.3
GPC1-208ENST00000469694 GIGYF1O75420 1035 aaPredicted RBP16.93■□□□□ 0.3
GPC1-208ENST00000469694 ANKRD44Q8N8A2 993 aa16.93■□□□□ 0.3
GPC1-208ENST00000469694 GCC1Q96CN9 775 aa16.93■□□□□ 0.3
GPC1-208ENST00000469694 BMP2KLQ5H9B9 411 aa16.93■□□□□ 0.3
GPC1-208ENST00000469694 CAVIN1Q6NZI2 390 aaKnown RBP16.93■□□□□ 0.3
GPC1-208ENST00000469694 SASS6Q6UVJ0 657 aa16.93■□□□□ 0.3
GPC1-208ENST00000469694 UTP14CQ5TAP6 766 aaKnown RBP16.92■□□□□ 0.3
GPC1-208ENST00000469694 C16orf71Q8IYS4 520 aaPredicted RBP16.92■□□□□ 0.3
GPC1-208ENST00000469694 RBM42Q9BTD8 480 aaKnown RBP16.92■□□□□ 0.3
GPC1-208ENST00000469694 LARP1Q6PKG0 1096 aaKnown RBP16.92■□□□□ 0.3
GPC1-208ENST00000469694 IFNL2Q8IZJ0 200 aa16.92■□□□□ 0.3
GPC1-208ENST00000469694 PI4KAP2A4QPH2 592 aa16.91■□□□□ 0.3
GPC1-208ENST00000469694 SMARCA5O60264 1052 aaPredicted RBP16.91■□□□□ 0.3
GPC1-208ENST00000469694 PI4KAP1Q8N8J0 262 aa16.91■□□□□ 0.3
GPC1-208ENST00000469694 SLC52A2Q9HAB3 445 aa16.91■□□□□ 0.3
GPC1-208ENST00000469694 PRIM1P49642 420 aaKnown RBP16.91■□□□□ 0.3
GPC1-208ENST00000469694 ARID3AQ99856 593 aa16.91■□□□□ 0.3
GPC1-208ENST00000469694 LMBRD1Q9NUN5 540 aa16.91■□□□□ 0.3
GPC1-208ENST00000469694 WDR17Q8IZU2 1322 aa16.91■□□□□ 0.3
GPC1-208ENST00000469694 PIP4K2AP48426 406 aaPredicted RBP16.91■□□□□ 0.3
GPC1-208ENST00000469694 MCTP1Q6DN14 999 aa16.91■□□□□ 0.3
GPC1-208ENST00000469694 CCDC94Q9BW85 323 aaPredicted RBP16.91■□□□□ 0.3
GPC1-208ENST00000469694 DCTPP1Q9H773 170 aa16.91■□□□□ 0.3
GPC1-208ENST00000469694 KDM3BQ7LBC6 1761 aa16.9■□□□□ 0.3
GPC1-208ENST00000469694 NCLP19338 710 aaKnown RBP16.9■□□□□ 0.3
GPC1-208ENST00000469694 DMTNQ08495 405 aa16.9■□□□□ 0.3
GPC1-208ENST00000469694 ZNF790Q6PG37 636 aa16.9■□□□□ 0.3
GPC1-208ENST00000469694 OTUD7AQ8TE49 926 aaPredicted RBP16.9■□□□□ 0.3
GPC1-208ENST00000469694 PRDM10Q9NQV6 1147 aa16.9■□□□□ 0.3
GPC1-208ENST00000469694 ZHX1Q9UKY1 873 aaPredicted RBP16.9■□□□□ 0.3
GPC1-208ENST00000469694 RPAP2Q8IXW5 612 aaPredicted RBP16.89■□□□□ 0.29
GPC1-208ENST00000469694 USP44Q9H0E7 712 aa16.89■□□□□ 0.29
GPC1-208ENST00000469694 ZNF496Q96IT1 587 aaPredicted RBP16.89■□□□□ 0.29
GPC1-208ENST00000469694 SOS1Q07889 1333 aaPredicted RBP16.89■□□□□ 0.29
GPC1-208ENST00000469694 EVA1CP58658 441 aa16.88■□□□□ 0.29
GPC1-208ENST00000469694 AIMP1Q12904 312 aaKnown RBP16.88■□□□□ 0.29
GPC1-208ENST00000469694 DDX54Q8TDD1 881 aaKnown RBP16.88■□□□□ 0.29
GPC1-208ENST00000469694 LRRFIP2Q9Y608 721 aaKnown RBP16.88■□□□□ 0.29
GPC1-208ENST00000469694 PNMA6EA0A0J9YXQ4 647 aa16.88■□□□□ 0.29
GPC1-208ENST00000469694 GNAI2P04899 355 aa16.88■□□□□ 0.29
GPC1-208ENST00000469694 NUCB2P80303 420 aa16.88■□□□□ 0.29
GPC1-208ENST00000469694 COL5A2P05997 1499 aaPredicted RBP16.88■□□□□ 0.29
GPC1-208ENST00000469694 HOXB7P09629 217 aa16.87■□□□□ 0.29
GPC1-208ENST00000469694 ZSCAN20P17040 1043 aaPredicted RBP16.87■□□□□ 0.29
GPC1-208ENST00000469694 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.87■□□□□ 0.29
GPC1-208ENST00000469694 CCDC39Q9UFE4 941 aa16.87■□□□□ 0.29
GPC1-208ENST00000469694 EXOC6BQ9Y2D4 811 aa16.87■□□□□ 0.29
GPC1-208ENST00000469694 CYP2E1P05181 493 aaPredicted RBP16.87■□□□□ 0.29
GPC1-208ENST00000469694 DBF4Q9UBU7 674 aaPredicted RBP16.87■□□□□ 0.29
GPC1-208ENST00000469694 MYL6BP14649 208 aa16.87■□□□□ 0.29
GPC1-208ENST00000469694 TBC1D9Q6ZT07 1266 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms