RNA–Protein interactions for RNA: ENST00000469558.1

MCF2L-222, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 616 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-222ENST00000469558 NEFMP07197 916 aa15.41■□□□□ 0.06
MCF2L-222ENST00000469558 FMNL2Q96PY5 1086 aa15.41■□□□□ 0.06
MCF2L-222ENST00000469558 GYS1P13807 737 aa15.4■□□□□ 0.06
MCF2L-222ENST00000469558 TRAPPC3LQ5T215 181 aa15.4■□□□□ 0.06
MCF2L-222ENST00000469558 PPP1R1BQ9UD71 204 aaPredicted RBP15.4■□□□□ 0.06
MCF2L-222ENST00000469558 SRP68Q9UHB9 627 aaKnown RBP15.4■□□□□ 0.06
MCF2L-222ENST00000469558 SCN7AQ01118 1682 aa15.4■□□□□ 0.06
MCF2L-222ENST00000469558 USP42Q9H9J4 1324 aaKnown RBP15.4■□□□□ 0.06
MCF2L-222ENST00000469558 COL15A1P39059 1388 aa15.39■□□□□ 0.05
MCF2L-222ENST00000469558 SYT17Q9BSW7 474 aa15.39■□□□□ 0.05
MCF2L-222ENST00000469558 USP16Q9Y5T5 823 aa15.39■□□□□ 0.05
MCF2L-222ENST00000469558 KIAA1551Q9HCM1 1747 aa15.39■□□□□ 0.05
MCF2L-222ENST00000469558 EIF5P55010 431 aaKnown RBP15.38■□□□□ 0.05
MCF2L-222ENST00000469558 KIF13BQ9NQT8 1826 aa15.38■□□□□ 0.05
MCF2L-222ENST00000469558 BCORQ6W2J9 1755 aa15.37■□□□□ 0.05
MCF2L-222ENST00000469558 APAF1O14727 1248 aa15.37■□□□□ 0.05
MCF2L-222ENST00000469558 A1BGP04217 495 aa15.37■□□□□ 0.05
MCF2L-222ENST00000469558 POLD1P28340 1107 aa15.37■□□□□ 0.05
MCF2L-222ENST00000469558 EIF4A1P60842 406 aaKnown RBP15.37■□□□□ 0.05
MCF2L-222ENST00000469558 NEUROD2Q15784 382 aa15.37■□□□□ 0.05
MCF2L-222ENST00000469558 BCL2L12Q9HB09 334 aa15.37■□□□□ 0.05
MCF2L-222ENST00000469558 MRS2Q9HD23 443 aa15.37■□□□□ 0.05
MCF2L-222ENST00000469558 NBPF26B4DH59 902 aa15.35■□□□□ 0.05
MCF2L-222ENST00000469558 GIGYF1O75420 1035 aaPredicted RBP15.35■□□□□ 0.05
MCF2L-222ENST00000469558 STARD3NLO95772 234 aa15.35■□□□□ 0.05
MCF2L-222ENST00000469558 SNRPA1P09661 255 aaKnown RBP15.35■□□□□ 0.05
MCF2L-222ENST00000469558 CANXP27824 592 aaKnown RBP15.35■□□□□ 0.05
MCF2L-222ENST00000469558 RFC4P35249 363 aa15.35■□□□□ 0.05
MCF2L-222ENST00000469558 PIP4K2AP48426 406 aaPredicted RBP15.35■□□□□ 0.05
MCF2L-222ENST00000469558 LMOD3Q0VAK6 560 aa15.35■□□□□ 0.05
MCF2L-222ENST00000469558 FKBP8Q14318 412 aa15.35■□□□□ 0.05
MCF2L-222ENST00000469558 NBPF10Q6P3W6 841 aaKnown RBP15.35■□□□□ 0.05
MCF2L-222ENST00000469558 NBPF15Q8N660 670 aa15.35■□□□□ 0.05
MCF2L-222ENST00000469558 NLGN2Q8NFZ4 835 aa15.35■□□□□ 0.05
MCF2L-222ENST00000469558 TEX13AQ9BXU3 409 aaPredicted RBP15.35■□□□□ 0.05
MCF2L-222ENST00000469558 NRXN2Q9P2S2 1712 aa15.34■□□□□ 0.05
MCF2L-222ENST00000469558 CHL1O00533 1208 aa15.34■□□□□ 0.05
MCF2L-222ENST00000469558 MMP10P09238 476 aa15.34■□□□□ 0.05
MCF2L-222ENST00000469558 DDR1Q08345 913 aa15.34■□□□□ 0.05
MCF2L-222ENST00000469558 NARFQ9UHQ1 456 aa15.34■□□□□ 0.05
MCF2L-222ENST00000469558 C10orf71Q711Q0 1435 aa15.34■□□□□ 0.05
MCF2L-222ENST00000469558 ZNF853P0CG23 659 aa15.33■□□□□ 0.04
MCF2L-222ENST00000469558 IL6STP40189 918 aaPredicted RBP15.33■□□□□ 0.04
MCF2L-222ENST00000469558 USPL1Q5W0Q7 1092 aa15.33■□□□□ 0.04
MCF2L-222ENST00000469558 NLGN1Q8N2Q7 840 aa15.33■□□□□ 0.04
MCF2L-222ENST00000469558 BABAM1Q9NWV8 329 aa15.33■□□□□ 0.04
MCF2L-222ENST00000469558 TSPYL4Q9UJ04 414 aa15.33■□□□□ 0.04
MCF2L-222ENST00000469558 UTRNP46939 3433 aa15.33■□□□□ 0.04
MCF2L-222ENST00000469558 SENP3-EIF4A1A0A087X0R7 540 aa15.32■□□□□ 0.04
MCF2L-222ENST00000469558 TM4SF1P30408 202 aa15.32■□□□□ 0.04
MCF2L-222ENST00000469558 KRT24Q2M2I5 525 aa15.32■□□□□ 0.04
MCF2L-222ENST00000469558 GOLGB1Q14789 3259 aaKnown RBP15.32■□□□□ 0.04
MCF2L-222ENST00000469558 AFDNP55196 1824 aaKnown RBP15.31■□□□□ 0.04
MCF2L-222ENST00000469558 LRP10Q7Z4F1 713 aa15.31■□□□□ 0.04
MCF2L-222ENST00000469558 PXDNLA1KZ92 1463 aa15.3■□□□□ 0.04
MCF2L-222ENST00000469558 POLRMTO00411 1230 aaKnown RBP15.3■□□□□ 0.04
MCF2L-222ENST00000469558 CAMTA2O94983 1202 aa15.3■□□□□ 0.04
MCF2L-222ENST00000469558 CD2APQ9Y5K6 639 aa15.3■□□□□ 0.04
MCF2L-222ENST00000469558 NFIXQ14938 502 aa15.29■□□□□ 0.04
MCF2L-222ENST00000469558 PDIA6Q15084 440 aa15.29■□□□□ 0.04
MCF2L-222ENST00000469558 TBC1D2BQ9UPU7 963 aa15.29■□□□□ 0.04
MCF2L-222ENST00000469558 CCDC27Q2M243 656 aa15.28■□□□□ 0.04
MCF2L-222ENST00000469558 KLHL34Q8N239 644 aa15.28■□□□□ 0.04
MCF2L-222ENST00000469558 CFAP44Q96MT7 982 aa15.28■□□□□ 0.04
MCF2L-222ENST00000469558 MBIPQ9NS73 344 aa15.28■□□□□ 0.04
MCF2L-222ENST00000469558 BRCA1P38398 1863 aaKnown RBP15.28■□□□□ 0.04
MCF2L-222ENST00000469558 N4BP2Q86UW6 1770 aaPredicted RBP15.28■□□□□ 0.04
MCF2L-222ENST00000469558 A0A087WZG4 1122 aa15.27■□□□□ 0.04
MCF2L-222ENST00000469558 ZPR1O75312 459 aa15.27■□□□□ 0.04
MCF2L-222ENST00000469558 CARMIL3Q8ND23 1372 aa15.26■□□□□ 0.03
MCF2L-222ENST00000469558 PROSER3Q2NL68 480 aa15.26■□□□□ 0.03
MCF2L-222ENST00000469558 NCBP3Q53F19 620 aaKnown RBP15.26■□□□□ 0.03
MCF2L-222ENST00000469558 TBC1D9BQ66K14 1250 aa15.26■□□□□ 0.03
MCF2L-222ENST00000469558 DZIP3Q86Y13 1208 aaKnown RBP15.26■□□□□ 0.03
MCF2L-222ENST00000469558 WWC1Q8IX03 1113 aa15.26■□□□□ 0.03
MCF2L-222ENST00000469558 IFT57Q9NWB7 429 aa15.26■□□□□ 0.03
MCF2L-222ENST00000469558 ZNF330Q9Y3S2 320 aaPredicted RBP15.26■□□□□ 0.03
MCF2L-222ENST00000469558 ANKRD31Q8N7Z5 1873 aa15.26■□□□□ 0.03
MCF2L-222ENST00000469558 YBX3P16989 372 aaKnown RBP eCLIP15.25■□□□□ 0.03
MCF2L-222ENST00000469558 LAS1LQ9Y4W2 734 aaKnown RBP15.25■□□□□ 0.03
MCF2L-222ENST00000469558 ERBB4Q15303 1308 aa15.24■□□□□ 0.03
MCF2L-222ENST00000469558 PARP3Q9Y6F1 533 aa15.24■□□□□ 0.03
MCF2L-222ENST00000469558 NUP98P52948 1817 aa15.23■□□□□ 0.03
MCF2L-222ENST00000469558 ANXA1P04083 346 aa15.23■□□□□ 0.03
MCF2L-222ENST00000469558 HLFQ16534 295 aa15.23■□□□□ 0.03
MCF2L-222ENST00000469558 TTLL7Q6ZT98 887 aa15.23■□□□□ 0.03
MCF2L-222ENST00000469558 FAM9BQ8IZU0 186 aa15.23■□□□□ 0.03
MCF2L-222ENST00000469558 DLEC1Q9Y238 1755 aa15.23■□□□□ 0.03
MCF2L-222ENST00000469558 COL11A2P13942 1736 aaPredicted RBP15.23■□□□□ 0.03
MCF2L-222ENST00000469558 MYL6BP14649 208 aa15.22■□□□□ 0.03
MCF2L-222ENST00000469558 KCNA3P22001 575 aa15.22■□□□□ 0.03
MCF2L-222ENST00000469558 RGL2O15211 777 aa15.21■□□□□ 0.03
MCF2L-222ENST00000469558 SERPINB2P05120 415 aa15.21■□□□□ 0.03
MCF2L-222ENST00000469558 HOXB7P09629 217 aa15.21■□□□□ 0.03
MCF2L-222ENST00000469558 EIF2S2P20042 333 aaKnown RBP15.21■□□□□ 0.03
MCF2L-222ENST00000469558 GNAI1P63096 354 aa15.21■□□□□ 0.03
MCF2L-222ENST00000469558 C8orf58Q8NAV2 365 aa15.21■□□□□ 0.03
MCF2L-222ENST00000469558 TSR2Q969E8 191 aaKnown RBP15.21■□□□□ 0.03
MCF2L-222ENST00000469558 IL16Q14005 1332 aa15.2■□□□□ 0.02
MCF2L-222ENST00000469558 ZNF521Q96K83 1311 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms