RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 GMCL1Q96IK5 515 aa7.99□□□□□ -1.13
VPS13D-203ENST00000466732 ZDHHC1Q8WTX9 485 aa7.98□□□□□ -1.13
VPS13D-203ENST00000466732 ARXQ96QS3 562 aa7.98□□□□□ -1.13
VPS13D-203ENST00000466732 C1orf115Q9H7X2 142 aa7.98□□□□□ -1.13
VPS13D-203ENST00000466732 PARP3Q9Y6F1 533 aa7.98□□□□□ -1.13
VPS13D-203ENST00000466732 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.97□□□□□ -1.13
VPS13D-203ENST00000466732 THBS1P07996 1170 aa7.97□□□□□ -1.13
VPS13D-203ENST00000466732 SRPK2P78362 688 aaKnown RBP7.97□□□□□ -1.13
VPS13D-203ENST00000466732 CCDC82Q8N4S0 544 aa7.97□□□□□ -1.13
VPS13D-203ENST00000466732 AIDAQ96BJ3 306 aa7.97□□□□□ -1.13
VPS13D-203ENST00000466732 NUCKS1Q9H1E3 243 aaKnown RBP7.97□□□□□ -1.13
VPS13D-203ENST00000466732 TSPAN10Q9H1Z9 355 aaPredicted RBP7.97□□□□□ -1.13
VPS13D-203ENST00000466732 RUBCNLQ9H714 662 aa7.97□□□□□ -1.13
VPS13D-203ENST00000466732 ATP4AP20648 1035 aa7.96□□□□□ -1.14
VPS13D-203ENST00000466732 KRT76Q01546 638 aa7.96□□□□□ -1.14
VPS13D-203ENST00000466732 TEAD4Q15561 434 aa7.96□□□□□ -1.14
VPS13D-203ENST00000466732 COL25A1Q9BXS0 654 aaPredicted RBP7.96□□□□□ -1.14
VPS13D-203ENST00000466732 CSB-PGBD3P0DP91 1061 aa7.95□□□□□ -1.14
VPS13D-203ENST00000466732 NOS2P35228 1153 aa7.95□□□□□ -1.14
VPS13D-203ENST00000466732 NBPF1Q3BBV0 1214 aa7.95□□□□□ -1.14
VPS13D-203ENST00000466732 PGBD3Q8N328 593 aa7.95□□□□□ -1.14
VPS13D-203ENST00000466732 C1orf216Q8TAB5 229 aa7.95□□□□□ -1.14
VPS13D-203ENST00000466732 L3MBTL2Q969R5 705 aa7.95□□□□□ -1.14
VPS13D-203ENST00000466732 GTPBP3Q969Y2 492 aaKnown RBP7.95□□□□□ -1.14
VPS13D-203ENST00000466732 TIMELESSQ9UNS1 1208 aa7.95□□□□□ -1.14
VPS13D-203ENST00000466732 GPR25O00155 361 aa7.94□□□□□ -1.14
VPS13D-203ENST00000466732 LBRQ14739 615 aaKnown RBP7.94□□□□□ -1.14
VPS13D-203ENST00000466732 RNFT1Q5M7Z0 435 aa7.94□□□□□ -1.14
VPS13D-203ENST00000466732 FOXR1Q6PIV2 292 aa7.94□□□□□ -1.14
VPS13D-203ENST00000466732 FAM200AQ8TCP9 573 aa7.94□□□□□ -1.14
VPS13D-203ENST00000466732 CNTNAP3BQ96NU0 1288 aa7.94□□□□□ -1.14
VPS13D-203ENST00000466732 HINFPQ9BQA5 517 aa7.94□□□□□ -1.14
VPS13D-203ENST00000466732 CNTNAP3Q9BZ76 1288 aa7.94□□□□□ -1.14
VPS13D-203ENST00000466732 CRISPLD1Q9H336 500 aa7.94□□□□□ -1.14
VPS13D-203ENST00000466732 ZDHHC3Q9NYG2 299 aa7.94□□□□□ -1.14
VPS13D-203ENST00000466732 NOVA2Q9UNW9 492 aaKnown RBP7.94□□□□□ -1.14
VPS13D-203ENST00000466732 SERTM1A2A2V5 107 aa7.93□□□□□ -1.14
VPS13D-203ENST00000466732 C21orf2O43822 256 aa7.93□□□□□ -1.14
VPS13D-203ENST00000466732 LGR5O75473 907 aa7.93□□□□□ -1.14
VPS13D-203ENST00000466732 TATP17735 454 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-203ENST00000466732 TXLNAP40222 546 aa7.93□□□□□ -1.14
VPS13D-203ENST00000466732 PSMA6P60900 246 aaKnown RBP7.93□□□□□ -1.14
VPS13D-203ENST00000466732 INSM1Q01101 510 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-203ENST00000466732 SH3PXD2AQ5TCZ1 1133 aa7.93□□□□□ -1.14
VPS13D-203ENST00000466732 PBXIP1Q96AQ6 731 aa7.93□□□□□ -1.14
VPS13D-203ENST00000466732 ZNF232Q9UNY5 417 aa7.93□□□□□ -1.14
VPS13D-203ENST00000466732 EML1O00423 815 aa7.92□□□□□ -1.14
VPS13D-203ENST00000466732 PPP1R12BO60237 982 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-203ENST00000466732 ATG7O95352 703 aa7.92□□□□□ -1.14
VPS13D-203ENST00000466732 UBAP2LQ14157 1087 aaKnown RBP7.92□□□□□ -1.14
VPS13D-203ENST00000466732 ELOAQ14241 798 aaKnown RBP7.92□□□□□ -1.14
VPS13D-203ENST00000466732 GAS6Q14393 721 aa7.92□□□□□ -1.14
VPS13D-203ENST00000466732 EFHC2Q5JST6 749 aa7.92□□□□□ -1.14
VPS13D-203ENST00000466732 POTEAQ6S8J7 498 aa7.92□□□□□ -1.14
VPS13D-203ENST00000466732 SCG3Q8WXD2 468 aaKnown RBP7.92□□□□□ -1.14
VPS13D-203ENST00000466732 ZMIZ1Q9ULJ6 1067 aa7.92□□□□□ -1.14
VPS13D-203ENST00000466732 CHMP3Q9Y3E7 222 aa7.92□□□□□ -1.14
VPS13D-203ENST00000466732 ATAD2Q6PL18 1390 aa7.92□□□□□ -1.14
VPS13D-203ENST00000466732 ARSJQ5FYB0 599 aaPredicted RBP7.91□□□□□ -1.14
VPS13D-203ENST00000466732 GAS2L2Q8NHY3 880 aa7.91□□□□□ -1.14
VPS13D-203ENST00000466732 TRERF1Q96PN7 1200 aa7.91□□□□□ -1.14
VPS13D-203ENST00000466732 ZIC5Q96T25 663 aa7.91□□□□□ -1.14
VPS13D-203ENST00000466732 A0A1W2PNR3 127 aa7.9□□□□□ -1.14
VPS13D-203ENST00000466732 LORP23490 312 aaPredicted RBP7.9□□□□□ -1.14
VPS13D-203ENST00000466732 HIRAP54198 1017 aaPredicted RBP7.9□□□□□ -1.14
VPS13D-203ENST00000466732 STAG2Q8N3U4 1231 aa7.9□□□□□ -1.14
VPS13D-203ENST00000466732 C2orf49Q9BVC5 232 aaPredicted RBP7.9□□□□□ -1.14
VPS13D-203ENST00000466732 SUPT5HO00267 1087 aaKnown RBP7.89□□□□□ -1.15
VPS13D-203ENST00000466732 IGFBP4P22692 258 aa7.89□□□□□ -1.15
VPS13D-203ENST00000466732 BICDL1Q6ZP65 573 aa7.89□□□□□ -1.15
VPS13D-203ENST00000466732 NLRP8Q86W28 1048 aa7.89□□□□□ -1.15
VPS13D-203ENST00000466732 STK32AQ8WU08 396 aa7.89□□□□□ -1.15
VPS13D-203ENST00000466732 CHMP7Q8WUX9 453 aaPredicted RBP7.89□□□□□ -1.15
VPS13D-203ENST00000466732 CFHR5Q9BXR6 569 aa7.89□□□□□ -1.15
VPS13D-203ENST00000466732 ZCCHC2Q9C0B9 1178 aaKnown RBP7.89□□□□□ -1.15
VPS13D-203ENST00000466732 HCN4Q9Y3Q4 1203 aa7.89□□□□□ -1.15
VPS13D-203ENST00000466732 ZSCAN1Q8NBB4 408 aa7.88□□□□□ -1.15
VPS13D-203ENST00000466732 C7orf43Q8WVR3 580 aa7.88□□□□□ -1.15
VPS13D-203ENST00000466732 PHACTR1Q9C0D0 580 aa7.88□□□□□ -1.15
VPS13D-203ENST00000466732 MBIPQ9NS73 344 aa7.88□□□□□ -1.15
VPS13D-203ENST00000466732 NDFIP2Q9NV92 336 aa7.88□□□□□ -1.15
VPS13D-203ENST00000466732 ACIN1Q9UKV3 1341 aaKnown RBP7.87□□□□□ -1.15
VPS13D-203ENST00000466732 BNIP3LO60238 219 aa7.87□□□□□ -1.15
VPS13D-203ENST00000466732 WEE1P30291 646 aa7.87□□□□□ -1.15
VPS13D-203ENST00000466732 FAM69CQ0P6D2 419 aa7.87□□□□□ -1.15
VPS13D-203ENST00000466732 C1orf53Q5VUE5 145 aa7.87□□□□□ -1.15
VPS13D-203ENST00000466732 FIGNL1Q6PIW4 674 aa7.87□□□□□ -1.15
VPS13D-203ENST00000466732 RHPN1Q8TCX5 695 aa7.87□□□□□ -1.15
VPS13D-203ENST00000466732 ABHD17AQ96GS6 310 aa7.87□□□□□ -1.15
VPS13D-203ENST00000466732 PHF24Q9UPV7 400 aa7.87□□□□□ -1.15
VPS13D-203ENST00000466732 PCDHGC4Q9Y5F7 938 aa7.87□□□□□ -1.15
VPS13D-203ENST00000466732 SLURP2P0DP57 97 aa7.86□□□□□ -1.15
VPS13D-203ENST00000466732 SRSF11Q05519 484 aaKnown RBP7.86□□□□□ -1.15
VPS13D-203ENST00000466732 SWI5Q1ZZU3 235 aa7.86□□□□□ -1.15
VPS13D-203ENST00000466732 TMEM164Q5U3C3 297 aa7.86□□□□□ -1.15
VPS13D-203ENST00000466732 ALDH16A1Q8IZ83 802 aa7.86□□□□□ -1.15
VPS13D-203ENST00000466732 KLRG1Q96E93 195 aa7.86□□□□□ -1.15
VPS13D-203ENST00000466732 ATXN7L1Q9ULK2 861 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-203ENST00000466732 GPC6Q9Y625 555 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-203ENST00000466732 GJA3Q9Y6H8 435 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms