RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 AEBP2Q6ZN18 517 aaPredicted RBP22.93■■□□□ 1.26
VPS13D-203ENST00000466732 CHIC1Q5VXU3 224 aa22.29■■□□□ 1.16
VPS13D-203ENST00000466732 PHF23Q9BUL5 403 aaPredicted RBP19.61■□□□□ 0.73
VPS13D-203ENST00000466732 SENP3Q9H4L4 574 aaPredicted RBP19.45■□□□□ 0.7
VPS13D-203ENST00000466732 FOXD1Q16676 465 aa18.08■□□□□ 0.48
VPS13D-203ENST00000466732 PLPPR3Q6T4P5 718 aa18.05■□□□□ 0.48
VPS13D-203ENST00000466732 PPP6R1Q9UPN7 881 aa17.33■□□□□ 0.36
VPS13D-203ENST00000466732 ADRA2BP18089 450 aa17.31■□□□□ 0.36
VPS13D-203ENST00000466732 PIAS4Q8N2W9 510 aaPredicted RBP17.02■□□□□ 0.32
VPS13D-203ENST00000466732 MSH5O43196 834 aa16.7■□□□□ 0.26
VPS13D-203ENST00000466732 PPP4R3CPQ6ZMV5 832 aa15.9■□□□□ 0.14
VPS13D-203ENST00000466732 SCAF1Q9H7N4 1312 aaKnown RBP15.81■□□□□ 0.12
VPS13D-203ENST00000466732 MAPK8IP2Q13387 824 aaPredicted RBP15.74■□□□□ 0.11
VPS13D-203ENST00000466732 DMRT2Q9Y5R5 561 aa15.52■□□□□ 0.08
VPS13D-203ENST00000466732 CNKSR2Q8WXI2 1034 aa15.47■□□□□ 0.07
VPS13D-203ENST00000466732 NCBP3Q53F19 620 aaKnown RBP15.44■□□□□ 0.06
VPS13D-203ENST00000466732 KCNA4P22459 653 aa15.43■□□□□ 0.06
VPS13D-203ENST00000466732 POTEDQ86YR6 584 aa15.39■□□□□ 0.05
VPS13D-203ENST00000466732 NPM3O75607 178 aaKnown RBP15.23■□□□□ 0.03
VPS13D-203ENST00000466732 RNF216Q9NWF9 866 aaPredicted RBP15.19■□□□□ 0.02
VPS13D-203ENST00000466732 HOXD11P31277 338 aaPredicted RBP15.16■□□□□ 0.02
VPS13D-203ENST00000466732 DCAF8L1A6NGE4 600 aa14.85□□□□□ -0.03
VPS13D-203ENST00000466732 DNAJC5BQ9UF47 199 aa14.79□□□□□ -0.04
VPS13D-203ENST00000466732 SLC4A1APQ9BWU0 796 aaKnown RBP14.66□□□□□ -0.06
VPS13D-203ENST00000466732 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.45□□□□□ -0.1
VPS13D-203ENST00000466732 SLC4A2P04920 1241 aa14.41□□□□□ -0.1
VPS13D-203ENST00000466732 RNF39Q9H2S5 420 aa14.31□□□□□ -0.12
VPS13D-203ENST00000466732 FOXD4L1Q9NU39 408 aa14.22□□□□□ -0.13
VPS13D-203ENST00000466732 U3KPZ7 1027 aaPredicted RBP14.21□□□□□ -0.13
VPS13D-203ENST00000466732 ZBTB22O15209 634 aa14.2□□□□□ -0.14
VPS13D-203ENST00000466732 EHMT2Q96KQ7 1210 aa14.13□□□□□ -0.15
VPS13D-203ENST00000466732 C1QBPQ07021 282 aaKnown RBP14.12□□□□□ -0.15
VPS13D-203ENST00000466732 MYCNP04198 464 aaPredicted RBP14.07□□□□□ -0.16
VPS13D-203ENST00000466732 CSRNP3Q8WYN3 585 aa14.03□□□□□ -0.16
VPS13D-203ENST00000466732 CACNB1Q02641 598 aaPredicted RBP14□□□□□ -0.17
VPS13D-203ENST00000466732 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.98□□□□□ -0.17
VPS13D-203ENST00000466732 HNRNPUL2Q1KMD3 747 aaKnown RBP13.98□□□□□ -0.17
VPS13D-203ENST00000466732 SAMD1Q6SPF0 538 aaPredicted RBP13.93□□□□□ -0.18
VPS13D-203ENST00000466732 APLP2Q06481 763 aa13.85□□□□□ -0.19
VPS13D-203ENST00000466732 SPINK5Q9NQ38 1064 aaPredicted RBP13.84□□□□□ -0.19
VPS13D-203ENST00000466732 CAPN15O75808 1086 aa13.78□□□□□ -0.2
VPS13D-203ENST00000466732 ATXN8OSP0DMR3 200 aa13.72□□□□□ -0.21
VPS13D-203ENST00000466732 ATF5Q9Y2D1 282 aaPredicted RBP13.72□□□□□ -0.21
VPS13D-203ENST00000466732 TRHP20396 242 aaPredicted RBP13.7□□□□□ -0.22
VPS13D-203ENST00000466732 ZNF219Q9P2Y4 722 aaPredicted RBP13.69□□□□□ -0.22
VPS13D-203ENST00000466732 DSG3P32926 999 aa13.59□□□□□ -0.23
VPS13D-203ENST00000466732 ABCB7O75027 752 aa13.52□□□□□ -0.25
VPS13D-203ENST00000466732 POLA2Q14181 598 aa13.45□□□□□ -0.26
VPS13D-203ENST00000466732 ZBTB12Q9Y330 459 aaPredicted RBP13.21□□□□□ -0.29
VPS13D-203ENST00000466732 FBLN2P98095 1184 aa13.12□□□□□ -0.31
VPS13D-203ENST00000466732 MKRN4PQ13434 485 aaPredicted RBP13.11□□□□□ -0.31
VPS13D-203ENST00000466732 OSCARQ8IYS5 282 aa13.01□□□□□ -0.33
VPS13D-203ENST00000466732 RBM42Q9BTD8 480 aaKnown RBP12.93□□□□□ -0.34
VPS13D-203ENST00000466732 SPDYE2BA6NHP3 402 aa12.86□□□□□ -0.35
VPS13D-203ENST00000466732 SPDYE6P0CI01 402 aa12.86□□□□□ -0.35
VPS13D-203ENST00000466732 SPDYE2Q495Y8 402 aa12.86□□□□□ -0.35
VPS13D-203ENST00000466732 ZNF692Q9BU19 519 aaPredicted RBP12.79□□□□□ -0.36
VPS13D-203ENST00000466732 SPDYE4A6NLX3 237 aa12.76□□□□□ -0.37
VPS13D-203ENST00000466732 AKT1S1Q96B36 256 aa12.76□□□□□ -0.37
VPS13D-203ENST00000466732 SSUH2Q9Y2M2 353 aa12.75□□□□□ -0.37
VPS13D-203ENST00000466732 FKBP8Q14318 412 aa12.69□□□□□ -0.38
VPS13D-203ENST00000466732 REM2Q8IYK8 340 aaPredicted RBP12.64□□□□□ -0.39
VPS13D-203ENST00000466732 PABPN1Q86U42 306 aaKnown RBP eCLIP12.62□□□□□ -0.39
VPS13D-203ENST00000466732 PROM2Q8N271 834 aa12.54□□□□□ -0.4
VPS13D-203ENST00000466732 PITPNM1O00562 1244 aa12.5□□□□□ -0.41
VPS13D-203ENST00000466732 SPDYE1Q8NFV5 336 aaPredicted RBP12.5□□□□□ -0.41
VPS13D-203ENST00000466732 CLEC11AQ9Y240 323 aa12.45□□□□□ -0.42
VPS13D-203ENST00000466732 CHRDL2Q6WN34 429 aa12.44□□□□□ -0.42
VPS13D-203ENST00000466732 STAG3Q9UJ98 1225 aa12.38□□□□□ -0.43
VPS13D-203ENST00000466732 PRR29P0C7W0 189 aa12.33□□□□□ -0.44
VPS13D-203ENST00000466732 FXR2P51116 673 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS13D-203ENST00000466732 PIP4P2Q8N4L2 257 aa12.27□□□□□ -0.45
VPS13D-203ENST00000466732 FBXO3Q9UK99 471 aa12.24□□□□□ -0.45
VPS13D-203ENST00000466732 PRKAR2AP13861 404 aaKnown RBP12.18□□□□□ -0.46
VPS13D-203ENST00000466732 CHADLQ6NUI6 762 aa12.17□□□□□ -0.46
VPS13D-203ENST00000466732 POTEHQ6S545 545 aa12.17□□□□□ -0.46
VPS13D-203ENST00000466732 CREBZFQ9NS37 354 aa12.16□□□□□ -0.46
VPS13D-203ENST00000466732 MIER1Q8N108 512 aa12.1□□□□□ -0.47
VPS13D-203ENST00000466732 VASPP50552 380 aaPredicted RBP12.09□□□□□ -0.47
VPS13D-203ENST00000466732 PLCD3Q8N3E9 789 aa12.08□□□□□ -0.48
VPS13D-203ENST00000466732 PLEKHG5O94827 1062 aa12.04□□□□□ -0.48
VPS13D-203ENST00000466732 FARP1Q9Y4F1 1045 aaPredicted RBP12.04□□□□□ -0.48
VPS13D-203ENST00000466732 MNX1P50219 401 aaPredicted RBP12.02□□□□□ -0.49
VPS13D-203ENST00000466732 NPM1P06748 294 aaKnown RBP eCLIP11.94□□□□□ -0.5
VPS13D-203ENST00000466732 ZBTB47Q9UFB7 747 aaPredicted RBP11.94□□□□□ -0.5
VPS13D-203ENST00000466732 IFNLR1Q8IU57 520 aaPredicted RBP11.93□□□□□ -0.5
VPS13D-203ENST00000466732 KLHL34Q8N239 644 aa11.91□□□□□ -0.5
VPS13D-203ENST00000466732 HAX1O00165 279 aa11.89□□□□□ -0.51
VPS13D-203ENST00000466732 C19orf67A6NJJ6 358 aa11.87□□□□□ -0.51
VPS13D-203ENST00000466732 CD44P16070 742 aaKnown RBP11.83□□□□□ -0.52
VPS13D-203ENST00000466732 NUBP1P53384 320 aa11.82□□□□□ -0.52
VPS13D-203ENST00000466732 EVX2Q03828 476 aa11.8□□□□□ -0.52
VPS13D-203ENST00000466732 SPOCK2Q92563 424 aa11.8□□□□□ -0.52
VPS13D-203ENST00000466732 RASEFQ8IZ41 740 aa11.79□□□□□ -0.52
VPS13D-203ENST00000466732 PAK3O75914 559 aaPredicted RBP11.75□□□□□ -0.53
VPS13D-203ENST00000466732 TSPYL2Q9H2G4 693 aaPredicted RBP11.75□□□□□ -0.53
VPS13D-203ENST00000466732 ZRANB1Q9UGI0 708 aa11.75□□□□□ -0.53
VPS13D-203ENST00000466732 FAM212AQ96EL1 285 aa11.71□□□□□ -0.53
VPS13D-203ENST00000466732 DCAF8Q5TAQ9 597 aa11.69□□□□□ -0.54
VPS13D-203ENST00000466732 ZNF579Q8NAF0 562 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms