RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 MIER1Q8N108 512 aa15.75■□□□□ 0.11
SHROOM3-202ENST00000466541 KDM3BQ7LBC6 1761 aa15.75■□□□□ 0.11
SHROOM3-202ENST00000466541 RPS6KA4O75676 772 aa15.74■□□□□ 0.11
SHROOM3-202ENST00000466541 SSFA2P28290 1259 aa15.74■□□□□ 0.11
SHROOM3-202ENST00000466541 RFC4P35249 363 aa15.74■□□□□ 0.11
SHROOM3-202ENST00000466541 PIP4K2AP48426 406 aaPredicted RBP15.74■□□□□ 0.11
SHROOM3-202ENST00000466541 ARXQ96QS3 562 aa15.74■□□□□ 0.11
SHROOM3-202ENST00000466541 ZBTB1Q9Y2K1 713 aa15.74■□□□□ 0.11
SHROOM3-202ENST00000466541 LRP5O75197 1615 aa15.73■□□□□ 0.11
SHROOM3-202ENST00000466541 A1BGP04217 495 aa15.73■□□□□ 0.11
SHROOM3-202ENST00000466541 SNRPA1P09661 255 aaKnown RBP15.73■□□□□ 0.11
SHROOM3-202ENST00000466541 KLHL34Q8N239 644 aa15.73■□□□□ 0.11
SHROOM3-202ENST00000466541 ARHGEF1Q92888 912 aaKnown RBP15.73■□□□□ 0.11
SHROOM3-202ENST00000466541 TEX13AQ9BXU3 409 aaPredicted RBP15.73■□□□□ 0.11
SHROOM3-202ENST00000466541 USP16Q9Y5T5 823 aa15.73■□□□□ 0.11
SHROOM3-202ENST00000466541 POLD1P28340 1107 aa15.72■□□□□ 0.11
SHROOM3-202ENST00000466541 EIF4A1P60842 406 aaKnown RBP15.72■□□□□ 0.11
SHROOM3-202ENST00000466541 SLC16A10Q8TF71 515 aa15.72■□□□□ 0.11
SHROOM3-202ENST00000466541 PTGER2P43116 358 aa15.71■□□□□ 0.11
SHROOM3-202ENST00000466541 SRP68Q9UHB9 627 aaKnown RBP15.71■□□□□ 0.11
SHROOM3-202ENST00000466541 CICQ96RK0 1608 aaPredicted RBP15.71■□□□□ 0.11
SHROOM3-202ENST00000466541 NPM2Q86SE8 214 aaKnown RBP15.7■□□□□ 0.1
SHROOM3-202ENST00000466541 SOS1Q07889 1333 aaPredicted RBP15.69■□□□□ 0.1
SHROOM3-202ENST00000466541 C4AP0C0L4 1744 aa15.69■□□□□ 0.1
SHROOM3-202ENST00000466541 CCER2I3L3R5 266 aa15.69■□□□□ 0.1
SHROOM3-202ENST00000466541 ZPR1O75312 459 aa15.69■□□□□ 0.1
SHROOM3-202ENST00000466541 GIGYF1O75420 1035 aaPredicted RBP15.69■□□□□ 0.1
SHROOM3-202ENST00000466541 ADRA2BP18089 450 aa15.69■□□□□ 0.1
SHROOM3-202ENST00000466541 EIF2S2P20042 333 aaKnown RBP15.69■□□□□ 0.1
SHROOM3-202ENST00000466541 NECTIN2Q92692 538 aa15.69■□□□□ 0.1
SHROOM3-202ENST00000466541 CHL1O00533 1208 aa15.68■□□□□ 0.1
SHROOM3-202ENST00000466541 CALD1Q05682 793 aaKnown RBP15.68■□□□□ 0.1
SHROOM3-202ENST00000466541 KRT24Q2M2I5 525 aa15.68■□□□□ 0.1
SHROOM3-202ENST00000466541 NGEFQ8N5V2 710 aa15.68■□□□□ 0.1
SHROOM3-202ENST00000466541 CFAP44Q96MT7 982 aa15.68■□□□□ 0.1
SHROOM3-202ENST00000466541 COL15A1P39059 1388 aa15.67■□□□□ 0.1
SHROOM3-202ENST00000466541 USPL1Q5W0Q7 1092 aa15.67■□□□□ 0.1
SHROOM3-202ENST00000466541 WWC1Q8IX03 1113 aa15.67■□□□□ 0.1
SHROOM3-202ENST00000466541 MBIPQ9NS73 344 aa15.67■□□□□ 0.1
SHROOM3-202ENST00000466541 BABAM1Q9NWV8 329 aa15.67■□□□□ 0.1
SHROOM3-202ENST00000466541 TBC1D2BQ9UPU7 963 aa15.67■□□□□ 0.1
SHROOM3-202ENST00000466541 GNAI1P63096 354 aa15.66■□□□□ 0.1
SHROOM3-202ENST00000466541 SGIP1Q9BQI5 828 aa15.66■□□□□ 0.1
SHROOM3-202ENST00000466541 LAMB4A4D0S4 1761 aa15.66■□□□□ 0.1
SHROOM3-202ENST00000466541 ELL2O00472 640 aaPredicted RBP15.65■□□□□ 0.1
SHROOM3-202ENST00000466541 MMP10P09238 476 aa15.65■□□□□ 0.1
SHROOM3-202ENST00000466541 GYS1P13807 737 aa15.65■□□□□ 0.1
SHROOM3-202ENST00000466541 MYL6BP14649 208 aa15.65■□□□□ 0.1
SHROOM3-202ENST00000466541 EIF5P55010 431 aaKnown RBP15.65■□□□□ 0.1
SHROOM3-202ENST00000466541 FKBP8Q14318 412 aa15.65■□□□□ 0.1
SHROOM3-202ENST00000466541 TSR2Q969E8 191 aaKnown RBP15.65■□□□□ 0.1
SHROOM3-202ENST00000466541 IFT57Q9NWB7 429 aa15.65■□□□□ 0.1
SHROOM3-202ENST00000466541 USP42Q9H9J4 1324 aaKnown RBP15.65■□□□□ 0.1
SHROOM3-202ENST00000466541 A0A087WZG4 1122 aa15.64■□□□□ 0.09
SHROOM3-202ENST00000466541 NBPF26B4DH59 902 aa15.64■□□□□ 0.09
SHROOM3-202ENST00000466541 NBPF10Q6P3W6 841 aaKnown RBP15.64■□□□□ 0.09
SHROOM3-202ENST00000466541 NLGN1Q8N2Q7 840 aa15.64■□□□□ 0.09
SHROOM3-202ENST00000466541 NBPF15Q8N660 670 aa15.64■□□□□ 0.09
SHROOM3-202ENST00000466541 FHDC1Q9C0D6 1143 aaPredicted RBP15.64■□□□□ 0.09
SHROOM3-202ENST00000466541 ZNF853P0CG23 659 aa15.63■□□□□ 0.09
SHROOM3-202ENST00000466541 IL6STP40189 918 aaPredicted RBP15.63■□□□□ 0.09
SHROOM3-202ENST00000466541 CCDC27Q2M243 656 aa15.63■□□□□ 0.09
SHROOM3-202ENST00000466541 BICDL1Q6ZP65 573 aa15.63■□□□□ 0.09
SHROOM3-202ENST00000466541 NARFQ9UHQ1 456 aa15.63■□□□□ 0.09
SHROOM3-202ENST00000466541 COL24A1Q17RW2 1714 aa15.63■□□□□ 0.09
SHROOM3-202ENST00000466541 ANXA1P04083 346 aa15.62■□□□□ 0.09
SHROOM3-202ENST00000466541 DUSP27Q5VZP5 1158 aa15.62■□□□□ 0.09
SHROOM3-202ENST00000466541 DZIP3Q86Y13 1208 aaKnown RBP15.62■□□□□ 0.09
SHROOM3-202ENST00000466541 PARP3Q9Y6F1 533 aa15.61■□□□□ 0.09
SHROOM3-202ENST00000466541 PROSER3Q2NL68 480 aa15.6■□□□□ 0.09
SHROOM3-202ENST00000466541 HDGFL1Q5TGJ6 251 aa15.6■□□□□ 0.09
SHROOM3-202ENST00000466541 C8orf58Q8NAV2 365 aa15.6■□□□□ 0.09
SHROOM3-202ENST00000466541 WDR63Q8IWG1 891 aa15.59■□□□□ 0.09
SHROOM3-202ENST00000466541 SYT17Q9BSW7 474 aa15.59■□□□□ 0.09
SHROOM3-202ENST00000466541 BCL2L12Q9HB09 334 aa15.59■□□□□ 0.09
SHROOM3-202ENST00000466541 CAMTA2O94983 1202 aa15.58■□□□□ 0.08
SHROOM3-202ENST00000466541 AIMP1Q12904 312 aaKnown RBP15.58■□□□□ 0.08
SHROOM3-202ENST00000466541 TSPYL6Q8N831 410 aa15.58■□□□□ 0.08
SHROOM3-202ENST00000466541 CHPF2Q9P2E5 772 aa15.58■□□□□ 0.08
SHROOM3-202ENST00000466541 DDR1Q08345 913 aa15.57■□□□□ 0.08
SHROOM3-202ENST00000466541 NFIXQ14938 502 aa15.57■□□□□ 0.08
SHROOM3-202ENST00000466541 TBC1D9BQ66K14 1250 aa15.57■□□□□ 0.08
SHROOM3-202ENST00000466541 KIF6Q6ZMV9 814 aa15.57■□□□□ 0.08
SHROOM3-202ENST00000466541 TTLL7Q6ZT98 887 aa15.57■□□□□ 0.08
SHROOM3-202ENST00000466541 PELP1Q8IZL8 1130 aaKnown RBP15.57■□□□□ 0.08
SHROOM3-202ENST00000466541 NLGN2Q8NFZ4 835 aa15.57■□□□□ 0.08
SHROOM3-202ENST00000466541 ZBTB3Q9H5J0 574 aa15.57■□□□□ 0.08
SHROOM3-202ENST00000466541 SPINK5Q9NQ38 1064 aaPredicted RBP15.57■□□□□ 0.08
SHROOM3-202ENST00000466541 WWC3Q9ULE0 1092 aa15.57■□□□□ 0.08
SHROOM3-202ENST00000466541 IL16Q14005 1332 aa15.57■□□□□ 0.08
SHROOM3-202ENST00000466541 FAM177BA6PVY3 158 aa15.56■□□□□ 0.08
SHROOM3-202ENST00000466541 TCERG1O14776 1098 aaKnown RBP15.56■□□□□ 0.08
SHROOM3-202ENST00000466541 NPHP1O15259 732 aa15.56■□□□□ 0.08
SHROOM3-202ENST00000466541 TM4SF1P30408 202 aa15.56■□□□□ 0.08
SHROOM3-202ENST00000466541 NCBP3Q53F19 620 aaKnown RBP15.56■□□□□ 0.08
SHROOM3-202ENST00000466541 FANCIQ9NVI1 1328 aa15.56■□□□□ 0.08
SHROOM3-202ENST00000466541 SCN7AQ01118 1682 aa15.56■□□□□ 0.08
SHROOM3-202ENST00000466541 BCORQ6W2J9 1755 aa15.55■□□□□ 0.08
SHROOM3-202ENST00000466541 POLRMTO00411 1230 aaKnown RBP15.55■□□□□ 0.08
SHROOM3-202ENST00000466541 PDIA6Q15084 440 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms