RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-205ENST00000452322 TRMT2AQ8IZ69 625 aaKnown RBP15.4■□□□□ 0.06
LINC00339-205ENST00000452322 SOS1Q07889 1333 aaPredicted RBP15.4■□□□□ 0.06
LINC00339-205ENST00000452322 RC3H1Q5TC82 1133 aaKnown RBP15.39■□□□□ 0.05
LINC00339-205ENST00000452322 USP16Q9Y5T5 823 aa15.39■□□□□ 0.05
LINC00339-205ENST00000452322 CRKLP46109 303 aaKnown RBP15.38■□□□□ 0.05
LINC00339-205ENST00000452322 NBPF14Q5TI25 921 aa15.38■□□□□ 0.05
LINC00339-205ENST00000452322 DUSP27Q5VZP5 1158 aa15.38■□□□□ 0.05
LINC00339-205ENST00000452322 C8orf58Q8NAV2 365 aa15.38■□□□□ 0.05
LINC00339-205ENST00000452322 AKT1S1Q96B36 256 aa15.38■□□□□ 0.05
LINC00339-205ENST00000452322 YTHDC1Q96MU7 727 aaKnown RBP15.38■□□□□ 0.05
LINC00339-205ENST00000452322 ANO8Q9HCE9 1232 aaPredicted RBP15.38■□□□□ 0.05
LINC00339-205ENST00000452322 MYH14Q7Z406 1995 aaKnown RBP15.38■□□□□ 0.05
LINC00339-205ENST00000452322 EXOSC9Q06265 439 aaKnown RBP15.37■□□□□ 0.05
LINC00339-205ENST00000452322 ZNF827Q17R98 1081 aa15.37■□□□□ 0.05
LINC00339-205ENST00000452322 AK7Q96M32 723 aa15.37■□□□□ 0.05
LINC00339-205ENST00000452322 CCDC87Q9NVE4 849 aa15.37■□□□□ 0.05
LINC00339-205ENST00000452322 STK32BQ9NY57 414 aa15.37■□□□□ 0.05
LINC00339-205ENST00000452322 ERBB4Q15303 1308 aa15.37■□□□□ 0.05
LINC00339-205ENST00000452322 SLC15A2Q16348 729 aa15.36■□□□□ 0.05
LINC00339-205ENST00000452322 TWISTNBQ3B726 338 aaPredicted RBP15.36■□□□□ 0.05
LINC00339-205ENST00000452322 INTS5Q6P9B9 1019 aaKnown RBP15.36■□□□□ 0.05
LINC00339-205ENST00000452322 TSPYL6Q8N831 410 aa15.36■□□□□ 0.05
LINC00339-205ENST00000452322 UBR3Q6ZT12 1888 aa15.36■□□□□ 0.05
LINC00339-205ENST00000452322 QSER1Q2KHR3 1735 aa15.36■□□□□ 0.05
LINC00339-205ENST00000452322 ELL2O00472 640 aaPredicted RBP15.36■□□□□ 0.05
LINC00339-205ENST00000452322 HDGFL1Q5TGJ6 251 aa15.36■□□□□ 0.05
LINC00339-205ENST00000452322 CHMP4AQ9BY43 222 aa15.36■□□□□ 0.05
LINC00339-205ENST00000452322 ZBTB1Q9Y2K1 713 aa15.36■□□□□ 0.05
LINC00339-205ENST00000452322 TUBGCP6Q96RT7 1819 aa15.35■□□□□ 0.05
LINC00339-205ENST00000452322 GNPATO15228 680 aa15.35■□□□□ 0.05
LINC00339-205ENST00000452322 EIF2S2P20042 333 aaKnown RBP15.35■□□□□ 0.05
LINC00339-205ENST00000452322 VAMP4O75379 141 aa15.34■□□□□ 0.05
LINC00339-205ENST00000452322 RPS6KA4O75676 772 aa15.34■□□□□ 0.05
LINC00339-205ENST00000452322 A1BGP04217 495 aa15.34■□□□□ 0.05
LINC00339-205ENST00000452322 IL6STP40189 918 aaPredicted RBP15.34■□□□□ 0.05
LINC00339-205ENST00000452322 TFCP2L1Q9NZI6 479 aa15.34■□□□□ 0.05
LINC00339-205ENST00000452322 RTCBQ9Y3I0 505 aaKnown RBP15.34■□□□□ 0.05
LINC00339-205ENST00000452322 CANXP27824 592 aaKnown RBP15.33■□□□□ 0.04
LINC00339-205ENST00000452322 SSFA2P28290 1259 aa15.33■□□□□ 0.04
LINC00339-205ENST00000452322 NBPF26B4DH59 902 aa15.32■□□□□ 0.04
LINC00339-205ENST00000452322 CT47B1P0C2W7 299 aaPredicted RBP15.32■□□□□ 0.04
LINC00339-205ENST00000452322 EIF5P55010 431 aaKnown RBP15.32■□□□□ 0.04
LINC00339-205ENST00000452322 CCDC30Q5VVM6 783 aa15.32■□□□□ 0.04
LINC00339-205ENST00000452322 NBPF10Q6P3W6 841 aaKnown RBP15.32■□□□□ 0.04
LINC00339-205ENST00000452322 AMIGO3Q86WK7 504 aa15.32■□□□□ 0.04
LINC00339-205ENST00000452322 NBPF15Q8N660 670 aa15.32■□□□□ 0.04
LINC00339-205ENST00000452322 FLAD1Q8NFF5 587 aa15.32■□□□□ 0.04
LINC00339-205ENST00000452322 NECTIN2Q92692 538 aa15.32■□□□□ 0.04
LINC00339-205ENST00000452322 COL15A1P39059 1388 aa15.31■□□□□ 0.04
LINC00339-205ENST00000452322 PNPLA7Q6ZV29 1317 aa15.31■□□□□ 0.04
LINC00339-205ENST00000452322 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.31■□□□□ 0.04
LINC00339-205ENST00000452322 PDIA6Q15084 440 aa15.31■□□□□ 0.04
LINC00339-205ENST00000452322 ZNF428Q96B54 188 aa15.31■□□□□ 0.04
LINC00339-205ENST00000452322 DDX21Q9NR30 783 aaKnown RBP eCLIP15.31■□□□□ 0.04
LINC00339-205ENST00000452322 DBF4Q9UBU7 674 aaPredicted RBP15.31■□□□□ 0.04
LINC00339-205ENST00000452322 PHF14O94880 888 aa15.3■□□□□ 0.04
LINC00339-205ENST00000452322 PIP4K2AP48426 406 aaPredicted RBP15.3■□□□□ 0.04
LINC00339-205ENST00000452322 TRAPPC3LQ5T215 181 aa15.3■□□□□ 0.04
LINC00339-205ENST00000452322 CHPF2Q9P2E5 772 aa15.3■□□□□ 0.04
LINC00339-205ENST00000452322 C4AP0C0L4 1744 aa15.3■□□□□ 0.04
LINC00339-205ENST00000452322 MYL6BP14649 208 aa15.29■□□□□ 0.04
LINC00339-205ENST00000452322 R3HDM1Q15032 1099 aaKnown RBP15.29■□□□□ 0.04
LINC00339-205ENST00000452322 LRP10Q7Z4F1 713 aa15.29■□□□□ 0.04
LINC00339-205ENST00000452322 NPM2Q86SE8 214 aaKnown RBP15.29■□□□□ 0.04
LINC00339-205ENST00000452322 STK31Q9BXU1 1019 aa15.29■□□□□ 0.04
LINC00339-205ENST00000452322 A0A087WZG4 1122 aa15.28■□□□□ 0.04
LINC00339-205ENST00000452322 PROSER3Q2NL68 480 aa15.28■□□□□ 0.04
LINC00339-205ENST00000452322 COL23A1Q86Y22 540 aaPredicted RBP15.28■□□□□ 0.04
LINC00339-205ENST00000452322 ARHGEF1Q92888 912 aaKnown RBP15.28■□□□□ 0.04
LINC00339-205ENST00000452322 HYPKQ9NX55 129 aa15.28■□□□□ 0.04
LINC00339-205ENST00000452322 ZNF330Q9Y3S2 320 aaPredicted RBP15.28■□□□□ 0.04
LINC00339-205ENST00000452322 CASZ1Q86V15 1759 aa15.28■□□□□ 0.04
LINC00339-205ENST00000452322 ANXA1P04083 346 aa15.27■□□□□ 0.04
LINC00339-205ENST00000452322 SMIM5Q71RC9 77 aa15.27■□□□□ 0.04
LINC00339-205ENST00000452322 CACNA1FO60840 1977 aa15.27■□□□□ 0.04
LINC00339-205ENST00000452322 PSDA5PKW4 1024 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-205ENST00000452322 RFC4P35249 363 aa15.26■□□□□ 0.03
LINC00339-205ENST00000452322 ALDH1L2Q3SY69 923 aa15.26■□□□□ 0.03
LINC00339-205ENST00000452322 USP42Q9H9J4 1324 aaKnown RBP15.26■□□□□ 0.03
LINC00339-205ENST00000452322 DZIP3Q86Y13 1208 aaKnown RBP15.25■□□□□ 0.03
LINC00339-205ENST00000452322 NARFQ9UHQ1 456 aa15.25■□□□□ 0.03
LINC00339-205ENST00000452322 SCN7AQ01118 1682 aa15.25■□□□□ 0.03
LINC00339-205ENST00000452322 BCORQ6W2J9 1755 aa15.25■□□□□ 0.03
LINC00339-205ENST00000452322 TCERG1O14776 1098 aaKnown RBP15.24■□□□□ 0.03
LINC00339-205ENST00000452322 SLC4A2P04920 1241 aa15.24■□□□□ 0.03
LINC00339-205ENST00000452322 COPS6Q7L5N1 327 aa15.24■□□□□ 0.03
LINC00339-205ENST00000452322 SLC16A10Q8TF71 515 aa15.24■□□□□ 0.03
LINC00339-205ENST00000452322 RGL2O15211 777 aa15.24■□□□□ 0.03
LINC00339-205ENST00000452322 ZPR1O75312 459 aa15.24■□□□□ 0.03
LINC00339-205ENST00000452322 KIF6Q6ZMV9 814 aa15.24■□□□□ 0.03
LINC00339-205ENST00000452322 XAGE3Q8WTP9 111 aa15.24■□□□□ 0.03
LINC00339-205ENST00000452322 SSH1Q8WYL5 1049 aa15.24■□□□□ 0.03
LINC00339-205ENST00000452322 PDGFDQ9GZP0 370 aaPredicted RBP15.24■□□□□ 0.03
LINC00339-205ENST00000452322 PHAXQ9H814 394 aaKnown RBP15.24■□□□□ 0.03
LINC00339-205ENST00000452322 TBC1D2BQ9UPU7 963 aa15.24■□□□□ 0.03
LINC00339-205ENST00000452322 CAMTA2O94983 1202 aa15.23■□□□□ 0.03
LINC00339-205ENST00000452322 RARSP54136 660 aaKnown RBP15.23■□□□□ 0.03
LINC00339-205ENST00000452322 USPL1Q5W0Q7 1092 aa15.23■□□□□ 0.03
LINC00339-205ENST00000452322 TTLL7Q6ZT98 887 aa15.23■□□□□ 0.03
LINC00339-205ENST00000452322 SRP68Q9UHB9 627 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms