RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 RREB1Q92766 1687 aa15□□□□□ -0.01
SCN9A-204ENST00000452182 SNRPA1P09661 255 aaKnown RBP14.99□□□□□ -0.01
SCN9A-204ENST00000452182 C1QBPQ07021 282 aaKnown RBP14.99□□□□□ -0.01
SCN9A-204ENST00000452182 TXNRD1Q16881 649 aa14.99□□□□□ -0.01
SCN9A-204ENST00000452182 PROM2Q8N271 834 aa14.99□□□□□ -0.01
SCN9A-204ENST00000452182 TEX13AQ9BXU3 409 aaPredicted RBP14.99□□□□□ -0.01
SCN9A-204ENST00000452182 CCNL1Q9UK58 526 aaPredicted RBP14.99□□□□□ -0.01
SCN9A-204ENST00000452182 ATP6V1AP38606 617 aa14.99□□□□□ -0.01
SCN9A-204ENST00000452182 EN1Q05925 392 aaPredicted RBP14.98□□□□□ -0.01
SCN9A-204ENST00000452182 EXOSC9Q06265 439 aaKnown RBP14.98□□□□□ -0.01
SCN9A-204ENST00000452182 C8orf58Q8NAV2 365 aa14.98□□□□□ -0.01
SCN9A-204ENST00000452182 KRT24Q2M2I5 525 aa14.97□□□□□ -0.01
SCN9A-204ENST00000452182 CHMP4AQ9BY43 222 aa14.97□□□□□ -0.01
SCN9A-204ENST00000452182 LRRC4BQ9NT99 713 aa14.97□□□□□ -0.01
SCN9A-204ENST00000452182 CT47B1P0C2W7 299 aaPredicted RBP14.96□□□□□ -0.01
SCN9A-204ENST00000452182 ITPK1Q13572 414 aa14.96□□□□□ -0.01
SCN9A-204ENST00000452182 EZH2Q15910 746 aaKnown RBP14.96□□□□□ -0.01
SCN9A-204ENST00000452182 TWISTNBQ3B726 338 aaPredicted RBP14.96□□□□□ -0.01
SCN9A-204ENST00000452182 DEFB132Q7Z7B7 95 aa14.96□□□□□ -0.01
SCN9A-204ENST00000452182 STARD3NLO95772 234 aa14.95□□□□□ -0.02
SCN9A-204ENST00000452182 DNAJC10Q8IXB1 793 aa14.95□□□□□ -0.02
SCN9A-204ENST00000452182 TSPYL6Q8N831 410 aa14.95□□□□□ -0.02
SCN9A-204ENST00000452182 USP16Q9Y5T5 823 aa14.95□□□□□ -0.02
SCN9A-204ENST00000452182 NUP188Q5SRE5 1749 aa14.95□□□□□ -0.02
SCN9A-204ENST00000452182 PRAMEF22A3QJZ6 481 aa14.95□□□□□ -0.02
SCN9A-204ENST00000452182 CYP19A1P11511 503 aaPredicted RBP14.95□□□□□ -0.02
SCN9A-204ENST00000452182 ZNF428Q96B54 188 aa14.95□□□□□ -0.02
SCN9A-204ENST00000452182 C4BP0C0L5 1744 aa14.94□□□□□ -0.02
SCN9A-204ENST00000452182 VAMP4O75379 141 aa14.94□□□□□ -0.02
SCN9A-204ENST00000452182 ERBB4Q15303 1308 aa14.93□□□□□ -0.02
SCN9A-204ENST00000452182 CNTNAP4Q9C0A0 1308 aa14.93□□□□□ -0.02
SCN9A-204ENST00000452182 ELL2O00472 640 aaPredicted RBP14.93□□□□□ -0.02
SCN9A-204ENST00000452182 KCNQ4P56696 695 aa14.93□□□□□ -0.02
SCN9A-204ENST00000452182 RC3H1Q5TC82 1133 aaKnown RBP14.93□□□□□ -0.02
SCN9A-204ENST00000452182 LINC00116Q8NCU8 138 aa14.93□□□□□ -0.02
SCN9A-204ENST00000452182 MYH14Q7Z406 1995 aaKnown RBP14.93□□□□□ -0.02
SCN9A-204ENST00000452182 CAPN15O75808 1086 aa14.92□□□□□ -0.02
SCN9A-204ENST00000452182 HDGFL1Q5TGJ6 251 aa14.92□□□□□ -0.02
SCN9A-204ENST00000452182 CACNA1FO60840 1977 aa14.92□□□□□ -0.02
SCN9A-204ENST00000452182 CRKLP46109 303 aaKnown RBP14.92□□□□□ -0.02
SCN9A-204ENST00000452182 CCDC30Q5VVM6 783 aa14.91□□□□□ -0.02
SCN9A-204ENST00000452182 INTS5Q6P9B9 1019 aaKnown RBP14.91□□□□□ -0.02
SCN9A-204ENST00000452182 CCDC87Q9NVE4 849 aa14.91□□□□□ -0.02
SCN9A-204ENST00000452182 EIF2S2P20042 333 aaKnown RBP14.9□□□□□ -0.02
SCN9A-204ENST00000452182 DBF4Q9UBU7 674 aaPredicted RBP14.9□□□□□ -0.02
SCN9A-204ENST00000452182 UBR3Q6ZT12 1888 aa14.9□□□□□ -0.02
SCN9A-204ENST00000452182 AKT1S1Q96B36 256 aa14.89□□□□□ -0.03
SCN9A-204ENST00000452182 QSER1Q2KHR3 1735 aa14.89□□□□□ -0.03
SCN9A-204ENST00000452182 NBPF26B4DH59 902 aa14.88□□□□□ -0.03
SCN9A-204ENST00000452182 SOCS7O14512 581 aa14.88□□□□□ -0.03
SCN9A-204ENST00000452182 A1BGP04217 495 aa14.88□□□□□ -0.03
SCN9A-204ENST00000452182 IL6STP40189 918 aaPredicted RBP14.88□□□□□ -0.03
SCN9A-204ENST00000452182 PDIA6Q15084 440 aa14.88□□□□□ -0.03
SCN9A-204ENST00000452182 ALDH1L2Q3SY69 923 aa14.88□□□□□ -0.03
SCN9A-204ENST00000452182 NBPF14Q5TI25 921 aa14.88□□□□□ -0.03
SCN9A-204ENST00000452182 NBPF10Q6P3W6 841 aaKnown RBP14.88□□□□□ -0.03
SCN9A-204ENST00000452182 NBPF15Q8N660 670 aa14.88□□□□□ -0.03
SCN9A-204ENST00000452182 DDX21Q9NR30 783 aaKnown RBP eCLIP14.88□□□□□ -0.03
SCN9A-204ENST00000452182 ZBTB1Q9Y2K1 713 aa14.88□□□□□ -0.03
SCN9A-204ENST00000452182 RPS6KA4O75676 772 aa14.88□□□□□ -0.03
SCN9A-204ENST00000452182 AK7Q96M32 723 aa14.88□□□□□ -0.03
SCN9A-204ENST00000452182 STK31Q9BXU1 1019 aa14.88□□□□□ -0.03
SCN9A-204ENST00000452182 EIF5P55010 431 aaKnown RBP14.87□□□□□ -0.03
SCN9A-204ENST00000452182 LRP10Q7Z4F1 713 aa14.87□□□□□ -0.03
SCN9A-204ENST00000452182 CHPF2Q9P2E5 772 aa14.87□□□□□ -0.03
SCN9A-204ENST00000452182 GNPATO15228 680 aa14.86□□□□□ -0.03
SCN9A-204ENST00000452182 CANXP27824 592 aaKnown RBP14.86□□□□□ -0.03
SCN9A-204ENST00000452182 BRPF1P55201 1214 aaPredicted RBP14.86□□□□□ -0.03
SCN9A-204ENST00000452182 POLA2Q14181 598 aa14.86□□□□□ -0.03
SCN9A-204ENST00000452182 SLC15A2Q16348 729 aa14.86□□□□□ -0.03
SCN9A-204ENST00000452182 ZNF827Q17R98 1081 aa14.86□□□□□ -0.03
SCN9A-204ENST00000452182 NECTIN2Q92692 538 aa14.86□□□□□ -0.03
SCN9A-204ENST00000452182 RTN4Q9NQC3 1192 aaKnown RBP14.86□□□□□ -0.03
SCN9A-204ENST00000452182 HYPKQ9NX55 129 aa14.86□□□□□ -0.03
SCN9A-204ENST00000452182 RTCBQ9Y3I0 505 aaKnown RBP14.86□□□□□ -0.03
SCN9A-204ENST00000452182 TUBGCP6Q96RT7 1819 aa14.86□□□□□ -0.03
SCN9A-204ENST00000452182 SSFA2P28290 1259 aa14.85□□□□□ -0.03
SCN9A-204ENST00000452182 RARSP54136 660 aaKnown RBP14.85□□□□□ -0.03
SCN9A-204ENST00000452182 MKRN4PQ13434 485 aaPredicted RBP14.85□□□□□ -0.03
SCN9A-204ENST00000452182 ANO8Q9HCE9 1232 aaPredicted RBP14.85□□□□□ -0.03
SCN9A-204ENST00000452182 STK32BQ9NY57 414 aa14.85□□□□□ -0.03
SCN9A-204ENST00000452182 PROSER3Q2NL68 480 aa14.84□□□□□ -0.03
SCN9A-204ENST00000452182 SSH1Q8WYL5 1049 aa14.84□□□□□ -0.03
SCN9A-204ENST00000452182 MYL6BP14649 208 aa14.84□□□□□ -0.03
SCN9A-204ENST00000452182 FLAD1Q8NFF5 587 aa14.84□□□□□ -0.03
SCN9A-204ENST00000452182 TFCP2L1Q9NZI6 479 aa14.84□□□□□ -0.03
SCN9A-204ENST00000452182 COL15A1P39059 1388 aa14.83□□□□□ -0.03
SCN9A-204ENST00000452182 C4AP0C0L4 1744 aa14.83□□□□□ -0.03
SCN9A-204ENST00000452182 A0A087WZG4 1122 aa14.83□□□□□ -0.04
SCN9A-204ENST00000452182 PIP4K2AP48426 406 aaPredicted RBP14.83□□□□□ -0.04
SCN9A-204ENST00000452182 MRPL50Q8N5N7 158 aaKnown RBP14.83□□□□□ -0.04
SCN9A-204ENST00000452182 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.82□□□□□ -0.04
SCN9A-204ENST00000452182 ANXA1P04083 346 aa14.82□□□□□ -0.04
SCN9A-204ENST00000452182 TRAPPC3LQ5T215 181 aa14.82□□□□□ -0.04
SCN9A-204ENST00000452182 NPM2Q86SE8 214 aaKnown RBP14.82□□□□□ -0.04
SCN9A-204ENST00000452182 AMIGO3Q86WK7 504 aa14.82□□□□□ -0.04
SCN9A-204ENST00000452182 SMC4Q9NTJ3 1288 aa14.82□□□□□ -0.04
SCN9A-204ENST00000452182 RCAN3Q9UKA8 241 aa14.82□□□□□ -0.04
SCN9A-204ENST00000452182 TCERG1O14776 1098 aaKnown RBP14.81□□□□□ -0.04
SCN9A-204ENST00000452182 RGL2O15211 777 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms