RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	AK7	Q96M32	723 aa		11.76	□□□□□ -0.53
RFX3-209	ENST00000451859	MYH14	Q7Z406	1995 aa	Known RBP	11.76	□□□□□ -0.53
RFX3-209	ENST00000451859	LOC102724428	A0A0B4J2F2	783 aa		11.75	□□□□□ -0.53
RFX3-209	ENST00000451859	PHF14	O94880	888 aa		11.75	□□□□□ -0.53
RFX3-209	ENST00000451859	HMOX1	P09601	288 aa		11.75	□□□□□ -0.53
RFX3-209	ENST00000451859	SIK1	P57059	783 aa		11.75	□□□□□ -0.53
RFX3-209	ENST00000451859	C1orf141	Q5JVX7	400 aa		11.75	□□□□□ -0.53
RFX3-209	ENST00000451859	COL23A1	Q86Y22	540 aa	Predicted RBP	11.75	□□□□□ -0.53
RFX3-209	ENST00000451859	SLC16A10	Q8TF71	515 aa		11.75	□□□□□ -0.53
RFX3-209	ENST00000451859	SYT17	Q9BSW7	474 aa		11.75	□□□□□ -0.53
RFX3-209	ENST00000451859	C4A	P0C0L4	1744 aa		11.74	□□□□□ -0.53
RFX3-209	ENST00000451859	AMOT	Q4VCS5	1084 aa		11.74	□□□□□ -0.53
RFX3-209	ENST00000451859	LINC00116	Q8NCU8	138 aa		11.74	□□□□□ -0.53
RFX3-209	ENST00000451859	ATG3	Q9NT62	314 aa		11.74	□□□□□ -0.53
RFX3-209	ENST00000451859	PLEKHG2	Q9H7P9	1386 aa		11.74	□□□□□ -0.53
RFX3-209	ENST00000451859	TJP1	Q07157	1748 aa		11.74	□□□□□ -0.53
RFX3-209	ENST00000451859	HSP90AB1	P08238	724 aa	Known RBP	11.73	□□□□□ -0.53
RFX3-209	ENST00000451859	KDR	P35968	1356 aa		11.73	□□□□□ -0.53
RFX3-209	ENST00000451859	ATP6V1A	P38606	617 aa		11.73	□□□□□ -0.53
RFX3-209	ENST00000451859	CABP4	P57796	275 aa		11.73	□□□□□ -0.53
RFX3-209	ENST00000451859	GOLGB1	Q14789	3259 aa	Known RBP	11.73	□□□□□ -0.53
RFX3-209	ENST00000451859	ZNF831	Q5JPB2	1677 aa		11.73	□□□□□ -0.53
RFX3-209	ENST00000451859	AMIGO3	Q86WK7	504 aa		11.73	□□□□□ -0.53
RFX3-209	ENST00000451859	DCAF5	Q96JK2	942 aa		11.73	□□□□□ -0.53
RFX3-209	ENST00000451859	UTRN	P46939	3433 aa		11.73	□□□□□ -0.53
RFX3-209	ENST00000451859	COL3A1	P02461	1466 aa	Predicted RBP	11.72	□□□□□ -0.53
RFX3-209	ENST00000451859	ERVV-2	B6SEH9	535 aa		11.72	□□□□□ -0.53
RFX3-209	ENST00000451859	U2SURP	O15042	1029 aa	Known RBP	11.72	□□□□□ -0.53
RFX3-209	ENST00000451859	DIAPH1	O60610	1272 aa	Known RBP	11.72	□□□□□ -0.53
RFX3-209	ENST00000451859	YY1	P25490	414 aa		11.72	□□□□□ -0.53
RFX3-209	ENST00000451859	ITPK1	Q13572	414 aa		11.72	□□□□□ -0.53
RFX3-209	ENST00000451859	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.71	□□□□□ -0.53
RFX3-209	ENST00000451859	GNPAT	O15228	680 aa		11.71	□□□□□ -0.53
RFX3-209	ENST00000451859	MARVELD3	Q96A59	401 aa		11.71	□□□□□ -0.53
RFX3-209	ENST00000451859	NPC1L1	Q9UHC9	1359 aa		11.7	□□□□□ -0.54
RFX3-209	ENST00000451859	FLAD1	Q8NFF5	587 aa		11.7	□□□□□ -0.54
RFX3-209	ENST00000451859	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.7	□□□□□ -0.54
RFX3-209	ENST00000451859	SIPA1L3	O60292	1781 aa	Predicted RBP	11.69	□□□□□ -0.54
RFX3-209	ENST00000451859	MAP3K5	Q99683	1374 aa		11.69	□□□□□ -0.54
RFX3-209	ENST00000451859	SNPH	O15079	494 aa		11.69	□□□□□ -0.54
RFX3-209	ENST00000451859	PTCD1	O75127	700 aa	Known RBP	11.69	□□□□□ -0.54
RFX3-209	ENST00000451859	PYGB	P11216	843 aa		11.69	□□□□□ -0.54
RFX3-209	ENST00000451859	NFATC2IP	Q8NCF5	419 aa		11.69	□□□□□ -0.54
RFX3-209	ENST00000451859	NLGN2	Q8NFZ4	835 aa		11.69	□□□□□ -0.54
RFX3-209	ENST00000451859	SLC4A9	Q96Q91	983 aa		11.69	□□□□□ -0.54
RFX3-209	ENST00000451859	UBR2	Q8IWV8	1755 aa		11.69	□□□□□ -0.54
RFX3-209	ENST00000451859	ADAMTS7	Q9UKP4	1686 aa		11.68	□□□□□ -0.54
RFX3-209	ENST00000451859	DLG5	Q8TDM6	1919 aa		11.68	□□□□□ -0.54
RFX3-209	ENST00000451859	HMGB2	P26583	209 aa	Known RBP	11.68	□□□□□ -0.54
RFX3-209	ENST00000451859	GPR162	Q16538	588 aa		11.68	□□□□□ -0.54
RFX3-209	ENST00000451859	AKAP4	Q5JQC9	854 aa		11.68	□□□□□ -0.54
RFX3-209	ENST00000451859	PCDHB8	Q9UN66	801 aa		11.68	□□□□□ -0.54
RFX3-209	ENST00000451859	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.68	□□□□□ -0.54
RFX3-209	ENST00000451859	SSFA2	P28290	1259 aa		11.67	□□□□□ -0.54
RFX3-209	ENST00000451859	MTHFSD	Q2M296	383 aa	Known RBP	11.67	□□□□□ -0.54
RFX3-209	ENST00000451859	LGR6	Q9HBX8	967 aa		11.67	□□□□□ -0.54
RFX3-209	ENST00000451859	CIC	Q96RK0	1608 aa	Predicted RBP	11.67	□□□□□ -0.54
RFX3-209	ENST00000451859	MRC1	P22897	1456 aa		11.66	□□□□□ -0.54
RFX3-209	ENST00000451859	PDCD7	Q8N8D1	485 aa	Known RBP	11.66	□□□□□ -0.54
RFX3-209	ENST00000451859	CFAP53	Q96M91	514 aa		11.66	□□□□□ -0.54
RFX3-209	ENST00000451859	RTCB	Q9Y3I0	505 aa	Known RBP	11.66	□□□□□ -0.54
RFX3-209	ENST00000451859	KIF13B	Q9NQT8	1826 aa		11.65	□□□□□ -0.54
RFX3-209	ENST00000451859	RNMT	O43148	476 aa	Known RBP	11.65	□□□□□ -0.54
RFX3-209	ENST00000451859	SLC39A6	Q13433	755 aa		11.65	□□□□□ -0.54
RFX3-209	ENST00000451859	WWC3	Q9ULE0	1092 aa		11.65	□□□□□ -0.54
RFX3-209	ENST00000451859	PPP2R1A	P30153	589 aa		11.64	□□□□□ -0.55
RFX3-209	ENST00000451859	SLC52A2	Q9HAB3	445 aa		11.64	□□□□□ -0.55
RFX3-209	ENST00000451859	KCP	Q6ZWJ8	1503 aa		11.64	□□□□□ -0.55
RFX3-209	ENST00000451859	KIAA1551	Q9HCM1	1747 aa		11.63	□□□□□ -0.55
RFX3-209	ENST00000451859	CNTNAP4	Q9C0A0	1308 aa		11.63	□□□□□ -0.55
RFX3-209	ENST00000451859	AFDN	P55196	1824 aa	Known RBP	11.63	□□□□□ -0.55
RFX3-209	ENST00000451859	RFC4	P35249	363 aa		11.63	□□□□□ -0.55
RFX3-209	ENST00000451859	CRKL	P46109	303 aa	Known RBP	11.63	□□□□□ -0.55
RFX3-209	ENST00000451859	TRAPPC3L	Q5T215	181 aa		11.63	□□□□□ -0.55
RFX3-209	ENST00000451859	DCAF8	Q5TAQ9	597 aa		11.63	□□□□□ -0.55
RFX3-209	ENST00000451859	BRCA1	P38398	1863 aa	Known RBP	11.62	□□□□□ -0.55
RFX3-209	ENST00000451859	RPS6KA4	O75676	772 aa		11.62	□□□□□ -0.55
RFX3-209	ENST00000451859	MMP10	P09238	476 aa		11.62	□□□□□ -0.55
RFX3-209	ENST00000451859	YBX3	P16989	372 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
RFX3-209	ENST00000451859	PRKAR2B	P31323	418 aa		11.62	□□□□□ -0.55
RFX3-209	ENST00000451859	DNAJC10	Q8IXB1	793 aa		11.62	□□□□□ -0.55
RFX3-209	ENST00000451859	GAS2L2	Q8NHY3	880 aa		11.62	□□□□□ -0.55
RFX3-209	ENST00000451859	ARHGEF1	Q92888	912 aa	Known RBP	11.62	□□□□□ -0.55
RFX3-209	ENST00000451859	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.61	□□□□□ -0.55
RFX3-209	ENST00000451859	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.61	□□□□□ -0.55
RFX3-209	ENST00000451859	RC3H1	Q5TC82	1133 aa	Known RBP	11.61	□□□□□ -0.55
RFX3-209	ENST00000451859	RSPH6A	Q9H0K4	717 aa		11.61	□□□□□ -0.55
RFX3-209	ENST00000451859	NUDC	Q9Y266	331 aa		11.61	□□□□□ -0.55
RFX3-209	ENST00000451859	CD2AP	Q9Y5K6	639 aa		11.61	□□□□□ -0.55
RFX3-209	ENST00000451859	POTEB3	A0JP26	581 aa		11.6	□□□□□ -0.55
RFX3-209	ENST00000451859	GNAT3	A8MTJ3	354 aa		11.6	□□□□□ -0.55
RFX3-209	ENST00000451859	TEF	Q10587	303 aa		11.6	□□□□□ -0.55
RFX3-209	ENST00000451859	POTEB	Q6S5H4	581 aa		11.6	□□□□□ -0.55
RFX3-209	ENST00000451859	PHACTR3	Q96KR7	559 aa		11.6	□□□□□ -0.55
RFX3-209	ENST00000451859	SRP68	Q9UHB9	627 aa	Known RBP	11.6	□□□□□ -0.55
RFX3-209	ENST00000451859	TTC5	Q8N0Z6	440 aa		11.59	□□□□□ -0.55
RFX3-209	ENST00000451859	IL17RE	Q8NFR9	667 aa		11.59	□□□□□ -0.55
RFX3-209	ENST00000451859	CCDC87	Q9NVE4	849 aa		11.59	□□□□□ -0.55
RFX3-209	ENST00000451859	CACNA1S	Q13698	1873 aa		11.58	□□□□□ -0.56
RFX3-209	ENST00000451859	GYS1	P13807	737 aa		11.58	□□□□□ -0.56

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