RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 DUSP27Q5VZP5 1158 aa16.89■□□□□ 0.29
VPS33A-202ENST00000451053 TEX13AQ9BXU3 409 aaPredicted RBP16.89■□□□□ 0.29
VPS33A-202ENST00000451053 STK32BQ9NY57 414 aa16.89■□□□□ 0.29
VPS33A-202ENST00000451053 TUBGCP6Q96RT7 1819 aa16.89■□□□□ 0.29
VPS33A-202ENST00000451053 MYH14Q7Z406 1995 aaKnown RBP16.88■□□□□ 0.29
VPS33A-202ENST00000451053 ELL2O00472 640 aaPredicted RBP16.88■□□□□ 0.29
VPS33A-202ENST00000451053 STARD3NLO95772 234 aa16.88■□□□□ 0.29
VPS33A-202ENST00000451053 SLC15A2Q16348 729 aa16.88■□□□□ 0.29
VPS33A-202ENST00000451053 NBPF14Q5TI25 921 aa16.88■□□□□ 0.29
VPS33A-202ENST00000451053 INTS5Q6P9B9 1019 aaKnown RBP16.88■□□□□ 0.29
VPS33A-202ENST00000451053 TSPYL6Q8N831 410 aa16.88■□□□□ 0.29
VPS33A-202ENST00000451053 AK7Q96M32 723 aa16.88■□□□□ 0.29
VPS33A-202ENST00000451053 CCDC87Q9NVE4 849 aa16.88■□□□□ 0.29
VPS33A-202ENST00000451053 GNPATO15228 680 aa16.87■□□□□ 0.29
VPS33A-202ENST00000451053 EXOSC9Q06265 439 aaKnown RBP16.87■□□□□ 0.29
VPS33A-202ENST00000451053 RC3H1Q5TC82 1133 aaKnown RBP16.87■□□□□ 0.29
VPS33A-202ENST00000451053 SMIM5Q71RC9 77 aa16.87■□□□□ 0.29
VPS33A-202ENST00000451053 AMIGO3Q86WK7 504 aa16.87■□□□□ 0.29
VPS33A-202ENST00000451053 TRMT2AQ8IZ69 625 aaKnown RBP16.87■□□□□ 0.29
VPS33A-202ENST00000451053 ZBTB1Q9Y2K1 713 aa16.87■□□□□ 0.29
VPS33A-202ENST00000451053 UBR3Q6ZT12 1888 aa16.86■□□□□ 0.29
VPS33A-202ENST00000451053 A1BGP04217 495 aa16.86■□□□□ 0.29
VPS33A-202ENST00000451053 HOXB7P09629 217 aa16.86■□□□□ 0.29
VPS33A-202ENST00000451053 EIF2S2P20042 333 aaKnown RBP16.86■□□□□ 0.29
VPS33A-202ENST00000451053 HMGB2P26583 209 aaKnown RBP16.86■□□□□ 0.29
VPS33A-202ENST00000451053 PIP4K2AP48426 406 aaPredicted RBP16.86■□□□□ 0.29
VPS33A-202ENST00000451053 NECTIN2Q92692 538 aa16.86■□□□□ 0.29
VPS33A-202ENST00000451053 TFCP2L1Q9NZI6 479 aa16.85■□□□□ 0.29
VPS33A-202ENST00000451053 NBPF26B4DH59 902 aa16.84■□□□□ 0.29
VPS33A-202ENST00000451053 RPS6KA4O75676 772 aa16.84■□□□□ 0.29
VPS33A-202ENST00000451053 CANXP27824 592 aaKnown RBP16.84■□□□□ 0.29
VPS33A-202ENST00000451053 R3HDM1Q15032 1099 aaKnown RBP16.84■□□□□ 0.29
VPS33A-202ENST00000451053 TWISTNBQ3B726 338 aaPredicted RBP16.84■□□□□ 0.29
VPS33A-202ENST00000451053 NBPF10Q6P3W6 841 aaKnown RBP16.84■□□□□ 0.29
VPS33A-202ENST00000451053 NBPF15Q8N660 670 aa16.84■□□□□ 0.29
VPS33A-202ENST00000451053 PNPLA7Q6ZV29 1317 aa16.84■□□□□ 0.29
VPS33A-202ENST00000451053 PSDA5PKW4 1024 aaPredicted RBP16.83■□□□□ 0.28
VPS33A-202ENST00000451053 PHF14O94880 888 aa16.83■□□□□ 0.28
VPS33A-202ENST00000451053 SOS1Q07889 1333 aaPredicted RBP16.83■□□□□ 0.28
VPS33A-202ENST00000451053 QSER1Q2KHR3 1735 aa16.83■□□□□ 0.28
VPS33A-202ENST00000451053 HDGFL1Q5TGJ6 251 aa16.83■□□□□ 0.28
VPS33A-202ENST00000451053 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.82■□□□□ 0.28
VPS33A-202ENST00000451053 RTCBQ9Y3I0 505 aaKnown RBP16.82■□□□□ 0.28
VPS33A-202ENST00000451053 VAMP4O75379 141 aa16.81■□□□□ 0.28
VPS33A-202ENST00000451053 SSFA2P28290 1259 aa16.81■□□□□ 0.28
VPS33A-202ENST00000451053 PDIA6Q15084 440 aa16.81■□□□□ 0.28
VPS33A-202ENST00000451053 PROSER3Q2NL68 480 aa16.81■□□□□ 0.28
VPS33A-202ENST00000451053 PDGFDQ9GZP0 370 aaPredicted RBP16.81■□□□□ 0.28
VPS33A-202ENST00000451053 ZNF330Q9Y3S2 320 aaPredicted RBP16.81■□□□□ 0.28
VPS33A-202ENST00000451053 COL15A1P39059 1388 aa16.8■□□□□ 0.28
VPS33A-202ENST00000451053 ERBB4Q15303 1308 aa16.8■□□□□ 0.28
VPS33A-202ENST00000451053 ANXA1P04083 346 aa16.8■□□□□ 0.28
VPS33A-202ENST00000451053 MYL6BP14649 208 aa16.8■□□□□ 0.28
VPS33A-202ENST00000451053 IL6STP40189 918 aaPredicted RBP16.8■□□□□ 0.28
VPS33A-202ENST00000451053 EIF5P55010 431 aaKnown RBP16.8■□□□□ 0.28
VPS33A-202ENST00000451053 COL23A1Q86Y22 540 aaPredicted RBP16.8■□□□□ 0.28
VPS33A-202ENST00000451053 CHPF2Q9P2E5 772 aa16.8■□□□□ 0.28
VPS33A-202ENST00000451053 CASZ1Q86V15 1759 aa16.79■□□□□ 0.28
VPS33A-202ENST00000451053 C4AP0C0L4 1744 aa16.79■□□□□ 0.28
VPS33A-202ENST00000451053 TCERG1O14776 1098 aaKnown RBP16.79■□□□□ 0.28
VPS33A-202ENST00000451053 ARHGEF1Q92888 912 aaKnown RBP16.79■□□□□ 0.28
VPS33A-202ENST00000451053 ADRA2BP18089 450 aa16.78■□□□□ 0.28
VPS33A-202ENST00000451053 TRAPPC3LQ5T215 181 aa16.78■□□□□ 0.28
VPS33A-202ENST00000451053 CCDC30Q5VVM6 783 aa16.78■□□□□ 0.28
VPS33A-202ENST00000451053 LRP10Q7Z4F1 713 aa16.78■□□□□ 0.28
VPS33A-202ENST00000451053 FLAD1Q8NFF5 587 aa16.78■□□□□ 0.28
VPS33A-202ENST00000451053 MSH5O43196 834 aa16.77■□□□□ 0.28
VPS33A-202ENST00000451053 DDX21Q9NR30 783 aaKnown RBP eCLIP16.77■□□□□ 0.28
VPS33A-202ENST00000451053 DBF4Q9UBU7 674 aaPredicted RBP16.77■□□□□ 0.28
VPS33A-202ENST00000451053 SRP68Q9UHB9 627 aaKnown RBP16.76■□□□□ 0.27
VPS33A-202ENST00000451053 A0A087WZG4 1122 aa16.75■□□□□ 0.27
VPS33A-202ENST00000451053 RFC4P35249 363 aa16.75■□□□□ 0.27
VPS33A-202ENST00000451053 TBC1D2BQ9UPU7 963 aa16.75■□□□□ 0.27
VPS33A-202ENST00000451053 USP42Q9H9J4 1324 aaKnown RBP16.74■□□□□ 0.27
VPS33A-202ENST00000451053 TTLL7Q6ZT98 887 aa16.74■□□□□ 0.27
VPS33A-202ENST00000451053 NPM2Q86SE8 214 aaKnown RBP16.74■□□□□ 0.27
VPS33A-202ENST00000451053 DZIP3Q86Y13 1208 aaKnown RBP16.74■□□□□ 0.27
VPS33A-202ENST00000451053 XAGE3Q8WTP9 111 aa16.74■□□□□ 0.27
VPS33A-202ENST00000451053 ARXQ96QS3 562 aa16.74■□□□□ 0.27
VPS33A-202ENST00000451053 STK31Q9BXU1 1019 aa16.74■□□□□ 0.27
VPS33A-202ENST00000451053 CHMP4AQ9BY43 222 aa16.74■□□□□ 0.27
VPS33A-202ENST00000451053 SCN7AQ01118 1682 aa16.74■□□□□ 0.27
VPS33A-202ENST00000451053 CT47B1P0C2W7 299 aaPredicted RBP16.73■□□□□ 0.27
VPS33A-202ENST00000451053 AIMP1Q12904 312 aaKnown RBP16.73■□□□□ 0.27
VPS33A-202ENST00000451053 USPL1Q5W0Q7 1092 aa16.73■□□□□ 0.27
VPS33A-202ENST00000451053 PHAXQ9H814 394 aaKnown RBP16.73■□□□□ 0.27
VPS33A-202ENST00000451053 HYPKQ9NX55 129 aa16.73■□□□□ 0.27
VPS33A-202ENST00000451053 NARFQ9UHQ1 456 aa16.73■□□□□ 0.27
VPS33A-202ENST00000451053 BCORQ6W2J9 1755 aa16.73■□□□□ 0.27
VPS33A-202ENST00000451053 ZPR1O75312 459 aa16.72■□□□□ 0.27
VPS33A-202ENST00000451053 CAMTA2O94983 1202 aa16.72■□□□□ 0.27
VPS33A-202ENST00000451053 ZBTB7AO95365 584 aa16.72■□□□□ 0.27
VPS33A-202ENST00000451053 SLC4A2P04920 1241 aa16.72■□□□□ 0.27
VPS33A-202ENST00000451053 MSL1Q68DK7 614 aa16.72■□□□□ 0.27
VPS33A-202ENST00000451053 COPS6Q7L5N1 327 aa16.72■□□□□ 0.27
VPS33A-202ENST00000451053 G2E3Q7L622 706 aa16.72■□□□□ 0.27
VPS33A-202ENST00000451053 SSH1Q8WYL5 1049 aa16.72■□□□□ 0.27
VPS33A-202ENST00000451053 BCL2L12Q9HB09 334 aa16.72■□□□□ 0.27
VPS33A-202ENST00000451053 GYS1P13807 737 aa16.71■□□□□ 0.27
VPS33A-202ENST00000451053 BCL2L13Q9BXK5 485 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms