RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 NLGN1Q8N2Q7 840 aa21.46■■□□□ 1.03
SF3A1-204ENST00000447376 RRP7AQ9Y3A4 280 aaKnown RBP21.46■■□□□ 1.03
SF3A1-204ENST00000447376 ZPR1O75312 459 aa21.45■■□□□ 1.02
SF3A1-204ENST00000447376 INTS5Q6P9B9 1019 aaKnown RBP21.45■■□□□ 1.02
SF3A1-204ENST00000447376 FHDC1Q9C0D6 1143 aaPredicted RBP21.45■■□□□ 1.02
SF3A1-204ENST00000447376 COL24A1Q17RW2 1714 aa21.44■■□□□ 1.02
SF3A1-204ENST00000447376 KCNQ3O43525 872 aa21.44■■□□□ 1.02
SF3A1-204ENST00000447376 CANXP27824 592 aaKnown RBP21.44■■□□□ 1.02
SF3A1-204ENST00000447376 THUMPD2Q9BTF0 503 aaKnown RBP21.44■■□□□ 1.02
SF3A1-204ENST00000447376 MYH14Q7Z406 1995 aaKnown RBP21.43■■□□□ 1.02
SF3A1-204ENST00000447376 A0A087WZG4 1122 aa21.43■■□□□ 1.02
SF3A1-204ENST00000447376 BABAM1Q9NWV8 329 aa21.43■■□□□ 1.02
SF3A1-204ENST00000447376 TSPYL4Q9UJ04 414 aa21.43■■□□□ 1.02
SF3A1-204ENST00000447376 ZBTB1Q9Y2K1 713 aa21.43■■□□□ 1.02
SF3A1-204ENST00000447376 COL15A1P39059 1388 aa21.43■■□□□ 1.02
SF3A1-204ENST00000447376 SOS1Q07889 1333 aaPredicted RBP21.42■■□□□ 1.02
SF3A1-204ENST00000447376 CCDC184Q52MB2 194 aa21.42■■□□□ 1.02
SF3A1-204ENST00000447376 MIS18AQ9NYP9 233 aa21.42■■□□□ 1.02
SF3A1-204ENST00000447376 ZNF330Q9Y3S2 320 aaPredicted RBP21.42■■□□□ 1.02
SF3A1-204ENST00000447376 CALD1Q05682 793 aaKnown RBP21.41■■□□□ 1.02
SF3A1-204ENST00000447376 SYT17Q9BSW7 474 aa21.41■■□□□ 1.02
SF3A1-204ENST00000447376 USP42Q9H9J4 1324 aaKnown RBP21.4■■□□□ 1.02
SF3A1-204ENST00000447376 C4AP0C0L4 1744 aa21.39■■□□□ 1.01
SF3A1-204ENST00000447376 APAF1O14727 1248 aa21.39■■□□□ 1.01
SF3A1-204ENST00000447376 GYS1P13807 737 aa21.39■■□□□ 1.01
SF3A1-204ENST00000447376 IL6STP40189 918 aaPredicted RBP21.39■■□□□ 1.01
SF3A1-204ENST00000447376 KDM3BQ7LBC6 1761 aa21.38■■□□□ 1.01
SF3A1-204ENST00000447376 MMP10P09238 476 aa21.38■■□□□ 1.01
SF3A1-204ENST00000447376 LAS1LQ9Y4W2 734 aaKnown RBP21.38■■□□□ 1.01
SF3A1-204ENST00000447376 PARP3Q9Y6F1 533 aa21.38■■□□□ 1.01
SF3A1-204ENST00000447376 CCER2I3L3R5 266 aa21.37■■□□□ 1.01
SF3A1-204ENST00000447376 NARFQ9UHQ1 456 aa21.37■■□□□ 1.01
SF3A1-204ENST00000447376 USP16Q9Y5T5 823 aa21.37■■□□□ 1.01
SF3A1-204ENST00000447376 EIF4A1P60842 406 aaKnown RBP21.36■■□□□ 1.01
SF3A1-204ENST00000447376 USPL1Q5W0Q7 1092 aa21.36■■□□□ 1.01
SF3A1-204ENST00000447376 SRP68Q9UHB9 627 aaKnown RBP21.36■■□□□ 1.01
SF3A1-204ENST00000447376 TRIM35Q9UPQ4 493 aa21.36■■□□□ 1.01
SF3A1-204ENST00000447376 CD2APQ9Y5K6 639 aa21.36■■□□□ 1.01
SF3A1-204ENST00000447376 A1BGP04217 495 aa21.35■■□□□ 1.01
SF3A1-204ENST00000447376 EIF5P55010 431 aaKnown RBP21.35■■□□□ 1.01
SF3A1-204ENST00000447376 GIGYF1O75420 1035 aaPredicted RBP21.34■■□□□ 1.01
SF3A1-204ENST00000447376 LAMB4A4D0S4 1761 aa21.33■■□□□ 1.01
SF3A1-204ENST00000447376 PRAMEF22A3QJZ6 481 aa21.33■■□□□ 1.01
SF3A1-204ENST00000447376 FAM9BQ8IZU0 186 aa21.32■■□□□ 1
SF3A1-204ENST00000447376 GNAI1P63096 354 aa21.31■■□□□ 1
SF3A1-204ENST00000447376 FKBP8Q14318 412 aa21.31■■□□□ 1
SF3A1-204ENST00000447376 DZIP3Q86Y13 1208 aaKnown RBP21.31■■□□□ 1
SF3A1-204ENST00000447376 CFAP44Q96MT7 982 aa21.31■■□□□ 1
SF3A1-204ENST00000447376 CHL1O00533 1208 aa21.3■■□□□ 1
SF3A1-204ENST00000447376 GPR162Q16538 588 aa21.3■■□□□ 1
SF3A1-204ENST00000447376 PELP1Q8IZL8 1130 aaKnown RBP21.3■■□□□ 1
SF3A1-204ENST00000447376 TBC1D2BQ9UPU7 963 aa21.3■■□□□ 1
SF3A1-204ENST00000447376 ZNF652Q9Y2D9 606 aa21.3■■□□□ 1
SF3A1-204ENST00000447376 ERBB4Q15303 1308 aa21.29■■□□□ 1
SF3A1-204ENST00000447376 PIP4K2AP48426 406 aaPredicted RBP21.28■■□□□ 1
SF3A1-204ENST00000447376 MIER1Q8N108 512 aa21.28■■□□□ 1
SF3A1-204ENST00000447376 IFT57Q9NWB7 429 aa21.28■■□□□ 1
SF3A1-204ENST00000447376 EIF2S2P20042 333 aaKnown RBP21.27■■□□□ 1
SF3A1-204ENST00000447376 CCDC27Q2M243 656 aa21.27■■□□□ 1
SF3A1-204ENST00000447376 NLGN2Q8NFZ4 835 aa21.27■■□□□ 1
SF3A1-204ENST00000447376 SCN7AQ01118 1682 aa21.26■□□□□ 0.99
SF3A1-204ENST00000447376 NPHP1O15259 732 aa21.26■□□□□ 0.99
SF3A1-204ENST00000447376 NCBP3Q53F19 620 aaKnown RBP21.26■□□□□ 0.99
SF3A1-204ENST00000447376 KIF6Q6ZMV9 814 aa21.26■□□□□ 0.99
SF3A1-204ENST00000447376 MYL6BP14649 208 aa21.25■□□□□ 0.99
SF3A1-204ENST00000447376 TM4SF1P30408 202 aa21.25■□□□□ 0.99
SF3A1-204ENST00000447376 NFIXQ14938 502 aa21.25■□□□□ 0.99
SF3A1-204ENST00000447376 BICDL1Q6ZP65 573 aa21.25■□□□□ 0.99
SF3A1-204ENST00000447376 NGEFQ8N5V2 710 aa21.25■□□□□ 0.99
SF3A1-204ENST00000447376 CHMP4AQ9BY43 222 aa21.25■□□□□ 0.99
SF3A1-204ENST00000447376 NBPF26B4DH59 902 aa21.24■□□□□ 0.99
SF3A1-204ENST00000447376 POLRMTO00411 1230 aaKnown RBP21.24■□□□□ 0.99
SF3A1-204ENST00000447376 HOXB7P09629 217 aa21.24■□□□□ 0.99
SF3A1-204ENST00000447376 TGFB2P61812 414 aa21.24■□□□□ 0.99
SF3A1-204ENST00000447376 NBPF10Q6P3W6 841 aaKnown RBP21.24■□□□□ 0.99
SF3A1-204ENST00000447376 CLEC4GQ6UXB4 293 aa21.24■□□□□ 0.99
SF3A1-204ENST00000447376 NBPF15Q8N660 670 aa21.24■□□□□ 0.99
SF3A1-204ENST00000447376 SETDB2Q96T68 719 aa21.24■□□□□ 0.99
SF3A1-204ENST00000447376 MBIPQ9NS73 344 aa21.24■□□□□ 0.99
SF3A1-204ENST00000447376 C10orf71Q711Q0 1435 aa21.23■□□□□ 0.99
SF3A1-204ENST00000447376 CAMTA2O94983 1202 aa21.23■□□□□ 0.99
SF3A1-204ENST00000447376 DDR1Q08345 913 aa21.23■□□□□ 0.99
SF3A1-204ENST00000447376 BCL2L12Q9HB09 334 aa21.23■□□□□ 0.99
SF3A1-204ENST00000447376 CARMIL3Q8ND23 1372 aa21.23■□□□□ 0.99
SF3A1-204ENST00000447376 RGL2O15211 777 aa21.22■□□□□ 0.99
SF3A1-204ENST00000447376 SERPINB2P05120 415 aa21.22■□□□□ 0.99
SF3A1-204ENST00000447376 GRIN3BO60391 1043 aa21.21■□□□□ 0.99
SF3A1-204ENST00000447376 ZNF853P0CG23 659 aa21.21■□□□□ 0.99
SF3A1-204ENST00000447376 HDGFL1Q5TGJ6 251 aa21.21■□□□□ 0.99
SF3A1-204ENST00000447376 TBC1D9BQ66K14 1250 aa21.21■□□□□ 0.99
SF3A1-204ENST00000447376 WWC1Q8IX03 1113 aa21.21■□□□□ 0.99
SF3A1-204ENST00000447376 BCORQ6W2J9 1755 aa21.2■□□□□ 0.99
SF3A1-204ENST00000447376 SENP3-EIF4A1A0A087X0R7 540 aa21.2■□□□□ 0.98
SF3A1-204ENST00000447376 SALL2Q9Y467 1007 aaPredicted RBP21.2■□□□□ 0.98
SF3A1-204ENST00000447376 DUSP27Q5VZP5 1158 aa21.19■□□□□ 0.98
SF3A1-204ENST00000447376 NECTIN2Q92692 538 aa21.19■□□□□ 0.98
SF3A1-204ENST00000447376 KIF13BQ9NQT8 1826 aa21.19■□□□□ 0.98
SF3A1-204ENST00000447376 IL16Q14005 1332 aa21.19■□□□□ 0.98
SF3A1-204ENST00000447376 ERVV-1B6SEH8 477 aa21.18■□□□□ 0.98
SF3A1-204ENST00000447376 MAP3K15Q6ZN16 1313 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms