RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 STARD3NLO95772 234 aa24.46■■□□□ 1.51
SHH-204ENST00000441114 ARHGEF1Q92888 912 aaKnown RBP24.46■■□□□ 1.51
SHH-204ENST00000441114 TEX13AQ9BXU3 409 aaPredicted RBP24.46■■□□□ 1.51
SHH-204ENST00000441114 TSPYL4Q9UJ04 414 aa24.46■■□□□ 1.51
SHH-204ENST00000441114 CANXP27824 592 aaKnown RBP24.45■■□□□ 1.5
SHH-204ENST00000441114 ZBTB1Q9Y2K1 713 aa24.45■■□□□ 1.5
SHH-204ENST00000441114 SNRPA1P09661 255 aaKnown RBP24.44■■□□□ 1.5
SHH-204ENST00000441114 POLD1P28340 1107 aa24.44■■□□□ 1.5
SHH-204ENST00000441114 RFC4P35249 363 aa24.44■■□□□ 1.5
SHH-204ENST00000441114 USP16Q9Y5T5 823 aa24.44■■□□□ 1.5
SHH-204ENST00000441114 C4AP0C0L4 1744 aa24.44■■□□□ 1.5
SHH-204ENST00000441114 DIEXFQ68CQ4 756 aaKnown RBP24.43■■□□□ 1.5
SHH-204ENST00000441114 SGIP1Q9BQI5 828 aa24.43■■□□□ 1.5
SHH-204ENST00000441114 COL24A1Q17RW2 1714 aa24.43■■□□□ 1.5
SHH-204ENST00000441114 ADRA2BP18089 450 aa24.42■■□□□ 1.5
SHH-204ENST00000441114 A1BGP04217 495 aa24.41■■□□□ 1.5
SHH-204ENST00000441114 EIF4A1P60842 406 aaKnown RBP24.41■■□□□ 1.5
SHH-204ENST00000441114 ARXQ96QS3 562 aa24.41■■□□□ 1.5
SHH-204ENST00000441114 ZNF330Q9Y3S2 320 aaPredicted RBP24.41■■□□□ 1.5
SHH-204ENST00000441114 SOS1Q07889 1333 aaPredicted RBP24.4■■□□□ 1.5
SHH-204ENST00000441114 KLHL34Q8N239 644 aa24.4■■□□□ 1.5
SHH-204ENST00000441114 PIP4K2AP48426 406 aaPredicted RBP24.39■■□□□ 1.49
SHH-204ENST00000441114 SRP68Q9UHB9 627 aaKnown RBP24.39■■□□□ 1.49
SHH-204ENST00000441114 SALL2Q9Y467 1007 aaPredicted RBP24.39■■□□□ 1.49
SHH-204ENST00000441114 COL15A1P39059 1388 aa24.38■■□□□ 1.49
SHH-204ENST00000441114 LAMB4A4D0S4 1761 aa24.37■■□□□ 1.49
SHH-204ENST00000441114 GIGYF1O75420 1035 aaPredicted RBP24.37■■□□□ 1.49
SHH-204ENST00000441114 BABAM1Q9NWV8 329 aa24.37■■□□□ 1.49
SHH-204ENST00000441114 CHL1O00533 1208 aa24.36■■□□□ 1.49
SHH-204ENST00000441114 ZPR1O75312 459 aa24.35■■□□□ 1.49
SHH-204ENST00000441114 GYS1P13807 737 aa24.35■■□□□ 1.49
SHH-204ENST00000441114 NPM2Q86SE8 214 aaKnown RBP24.35■■□□□ 1.49
SHH-204ENST00000441114 FHDC1Q9C0D6 1143 aaPredicted RBP24.35■■□□□ 1.49
SHH-204ENST00000441114 USP42Q9H9J4 1324 aaKnown RBP24.35■■□□□ 1.49
SHH-204ENST00000441114 EIF5P55010 431 aaKnown RBP24.34■■□□□ 1.49
SHH-204ENST00000441114 CALD1Q05682 793 aaKnown RBP24.34■■□□□ 1.49
SHH-204ENST00000441114 USPL1Q5W0Q7 1092 aa24.34■■□□□ 1.49
SHH-204ENST00000441114 IL6STP40189 918 aaPredicted RBP24.33■■□□□ 1.49
SHH-204ENST00000441114 NLGN1Q8N2Q7 840 aa24.33■■□□□ 1.49
SHH-204ENST00000441114 CFAP44Q96MT7 982 aa24.33■■□□□ 1.49
SHH-204ENST00000441114 SRCAPQ6ZRS2 3230 aa24.32■■□□□ 1.48
SHH-204ENST00000441114 CCER2I3L3R5 266 aa24.32■■□□□ 1.48
SHH-204ENST00000441114 NARFQ9UHQ1 456 aa24.32■■□□□ 1.48
SHH-204ENST00000441114 TBC1D2BQ9UPU7 963 aa24.32■■□□□ 1.48
SHH-204ENST00000441114 A0A087WZG4 1122 aa24.31■■□□□ 1.48
SHH-204ENST00000441114 MMP10P09238 476 aa24.31■■□□□ 1.48
SHH-204ENST00000441114 EIF2S2P20042 333 aaKnown RBP24.31■■□□□ 1.48
SHH-204ENST00000441114 FKBP8Q14318 412 aa24.31■■□□□ 1.48
SHH-204ENST00000441114 KRT24Q2M2I5 525 aa24.31■■□□□ 1.48
SHH-204ENST00000441114 MIER1Q8N108 512 aa24.31■■□□□ 1.48
SHH-204ENST00000441114 MBIPQ9NS73 344 aa24.31■■□□□ 1.48
SHH-204ENST00000441114 NBPF26B4DH59 902 aa24.3■■□□□ 1.48
SHH-204ENST00000441114 GNAI1P63096 354 aa24.3■■□□□ 1.48
SHH-204ENST00000441114 NBPF10Q6P3W6 841 aaKnown RBP24.3■■□□□ 1.48
SHH-204ENST00000441114 WWC1Q8IX03 1113 aa24.3■■□□□ 1.48
SHH-204ENST00000441114 NBPF15Q8N660 670 aa24.3■■□□□ 1.48
SHH-204ENST00000441114 CCDC27Q2M243 656 aa24.29■■□□□ 1.48
SHH-204ENST00000441114 NGEFQ8N5V2 710 aa24.29■■□□□ 1.48
SHH-204ENST00000441114 NECTIN2Q92692 538 aa24.29■■□□□ 1.48
SHH-204ENST00000441114 SYT17Q9BSW7 474 aa24.29■■□□□ 1.48
SHH-204ENST00000441114 IFT57Q9NWB7 429 aa24.29■■□□□ 1.48
SHH-204ENST00000441114 ZNF853P0CG23 659 aa24.28■■□□□ 1.48
SHH-204ENST00000441114 MYL6BP14649 208 aa24.27■■□□□ 1.48
SHH-204ENST00000441114 DZIP3Q86Y13 1208 aaKnown RBP24.27■■□□□ 1.48
SHH-204ENST00000441114 PARP3Q9Y6F1 533 aa24.26■■□□□ 1.47
SHH-204ENST00000441114 BCL2L12Q9HB09 334 aa24.25■■□□□ 1.47
SHH-204ENST00000441114 BICDL1Q6ZP65 573 aa24.24■■□□□ 1.47
SHH-204ENST00000441114 ELL2O00472 640 aaPredicted RBP24.23■■□□□ 1.47
SHH-204ENST00000441114 NCBP3Q53F19 620 aaKnown RBP24.23■■□□□ 1.47
SHH-204ENST00000441114 DUSP27Q5VZP5 1158 aa24.23■■□□□ 1.47
SHH-204ENST00000441114 TSR2Q969E8 191 aaKnown RBP24.23■■□□□ 1.47
SHH-204ENST00000441114 SCN7AQ01118 1682 aa24.23■■□□□ 1.47
SHH-204ENST00000441114 BCORQ6W2J9 1755 aa24.22■■□□□ 1.47
SHH-204ENST00000441114 DDR1Q08345 913 aa24.22■■□□□ 1.47
SHH-204ENST00000441114 NFIXQ14938 502 aa24.22■■□□□ 1.47
SHH-204ENST00000441114 NLGN2Q8NFZ4 835 aa24.22■■□□□ 1.47
SHH-204ENST00000441114 CAMTA2O94983 1202 aa24.21■■□□□ 1.47
SHH-204ENST00000441114 ANXA1P04083 346 aa24.21■■□□□ 1.47
SHH-204ENST00000441114 TM4SF1P30408 202 aa24.21■■□□□ 1.47
SHH-204ENST00000441114 TBC1D9BQ66K14 1250 aa24.2■■□□□ 1.46
SHH-204ENST00000441114 ERBB4Q15303 1308 aa24.19■■□□□ 1.46
SHH-204ENST00000441114 HDGFL1Q5TGJ6 251 aa24.19■■□□□ 1.46
SHH-204ENST00000441114 WDR63Q8IWG1 891 aa24.19■■□□□ 1.46
SHH-204ENST00000441114 C8orf58Q8NAV2 365 aa24.19■■□□□ 1.46
SHH-204ENST00000441114 CD2APQ9Y5K6 639 aa24.19■■□□□ 1.46
SHH-204ENST00000441114 AFDNP55196 1824 aaKnown RBP24.19■■□□□ 1.46
SHH-204ENST00000441114 IL16Q14005 1332 aa24.18■■□□□ 1.46
SHH-204ENST00000441114 POLRMTO00411 1230 aaKnown RBP24.18■■□□□ 1.46
SHH-204ENST00000441114 PROSER3Q2NL68 480 aa24.18■■□□□ 1.46
SHH-204ENST00000441114 TTLL7Q6ZT98 887 aa24.18■■□□□ 1.46
SHH-204ENST00000441114 PDIA6Q15084 440 aa24.17■■□□□ 1.46
SHH-204ENST00000441114 KIF6Q6ZMV9 814 aa24.17■■□□□ 1.46
SHH-204ENST00000441114 DCAF8L1A6NGE4 600 aa24.16■■□□□ 1.46
SHH-204ENST00000441114 SERPINB2P05120 415 aa24.16■■□□□ 1.46
SHH-204ENST00000441114 HOXB7P09629 217 aa24.16■■□□□ 1.46
SHH-204ENST00000441114 PELP1Q8IZL8 1130 aaKnown RBP24.16■■□□□ 1.46
SHH-204ENST00000441114 CHPF2Q9P2E5 772 aa24.16■■□□□ 1.46
SHH-204ENST00000441114 AIMP1Q12904 312 aaKnown RBP24.15■■□□□ 1.46
SHH-204ENST00000441114 HLFQ16534 295 aa24.15■■□□□ 1.46
SHH-204ENST00000441114 ZNF652Q9Y2D9 606 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms