RNA–Protein interactions for RNA: ENST00000439669.5

CPNE1-217, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 784 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-217ENST00000439669 MMP10P09238 476 aa31.7■■■□□ 2.67
CPNE1-217ENST00000439669 NLGN2Q8NFZ4 835 aa31.7■■■□□ 2.67
CPNE1-217ENST00000439669 THUMPD2Q9BTF0 503 aaKnown RBP31.7■■■□□ 2.67
CPNE1-217ENST00000439669 CANXP27824 592 aaKnown RBP31.69■■■□□ 2.66
CPNE1-217ENST00000439669 USP42Q9H9J4 1324 aaKnown RBP31.69■■■□□ 2.66
CPNE1-217ENST00000439669 COL15A1P39059 1388 aa31.68■■■□□ 2.66
CPNE1-217ENST00000439669 RIPK4P57078 832 aa31.67■■■□□ 2.66
CPNE1-217ENST00000439669 MIS18AQ9NYP9 233 aa31.67■■■□□ 2.66
CPNE1-217ENST00000439669 ADAMTS8Q9UP79 889 aa31.67■■■□□ 2.66
CPNE1-217ENST00000439669 TMPOP42166 694 aaKnown RBP31.66■■■□□ 2.66
CPNE1-217ENST00000439669 CD2APQ9Y5K6 639 aa31.66■■■□□ 2.66
CPNE1-217ENST00000439669 ZPR1O75312 459 aa31.65■■■□□ 2.66
CPNE1-217ENST00000439669 PNISRQ8TF01 805 aaKnown RBP31.65■■■□□ 2.66
CPNE1-217ENST00000439669 RUNDC1Q96C34 613 aa31.65■■■□□ 2.66
CPNE1-217ENST00000439669 RRP7AQ9Y3A4 280 aaKnown RBP31.64■■■□□ 2.66
CPNE1-217ENST00000439669 LMOD3Q0VAK6 560 aa31.63■■■□□ 2.65
CPNE1-217ENST00000439669 PELP1Q8IZL8 1130 aaKnown RBP31.63■■■□□ 2.65
CPNE1-217ENST00000439669 ZNF330Q9Y3S2 320 aaPredicted RBP31.63■■■□□ 2.65
CPNE1-217ENST00000439669 SNRPA1P09661 255 aaKnown RBP31.62■■■□□ 2.65
CPNE1-217ENST00000439669 FKBP8Q14318 412 aa31.62■■■□□ 2.65
CPNE1-217ENST00000439669 USPL1Q5W0Q7 1092 aa31.62■■■□□ 2.65
CPNE1-217ENST00000439669 NEUROD2Q15784 382 aa31.61■■■□□ 2.65
CPNE1-217ENST00000439669 GPR162Q16538 588 aa31.61■■■□□ 2.65
CPNE1-217ENST00000439669 PARP3Q9Y6F1 533 aa31.61■■■□□ 2.65
CPNE1-217ENST00000439669 PRAMEF22A3QJZ6 481 aa31.6■■■□□ 2.65
CPNE1-217ENST00000439669 ANP32CO43423 234 aa31.6■■■□□ 2.65
CPNE1-217ENST00000439669 A1BGP04217 495 aa31.6■■■□□ 2.65
CPNE1-217ENST00000439669 NARFQ9UHQ1 456 aa31.6■■■□□ 2.65
CPNE1-217ENST00000439669 USP16Q9Y5T5 823 aa31.6■■■□□ 2.65
CPNE1-217ENST00000439669 EIF5P55010 431 aaKnown RBP31.59■■■□□ 2.65
CPNE1-217ENST00000439669 KDM3BQ7LBC6 1761 aa31.58■■■□□ 2.65
CPNE1-217ENST00000439669 A0A087WZG4 1122 aa31.58■■■□□ 2.65
CPNE1-217ENST00000439669 NPM2Q86SE8 214 aaKnown RBP31.57■■■□□ 2.64
CPNE1-217ENST00000439669 IL6STP40189 918 aaPredicted RBP31.56■■■□□ 2.64
CPNE1-217ENST00000439669 PIP4K2AP48426 406 aaPredicted RBP31.54■■■□□ 2.64
CPNE1-217ENST00000439669 CCDC184Q52MB2 194 aa31.54■■■□□ 2.64
CPNE1-217ENST00000439669 TSPYL4Q9UJ04 414 aa31.54■■■□□ 2.64
CPNE1-217ENST00000439669 DDR1Q08345 913 aa31.53■■■□□ 2.64
CPNE1-217ENST00000439669 C10orf71Q711Q0 1435 aa31.52■■■□□ 2.64
CPNE1-217ENST00000439669 EIF4A1P60842 406 aaKnown RBP31.52■■■□□ 2.64
CPNE1-217ENST00000439669 BCL2L12Q9HB09 334 aa31.51■■■□□ 2.63
CPNE1-217ENST00000439669 TBC1D2BQ9UPU7 963 aa31.51■■■□□ 2.63
CPNE1-217ENST00000439669 LAMB4A4D0S4 1761 aa31.5■■■□□ 2.63
CPNE1-217ENST00000439669 YY1P25490 414 aa31.49■■■□□ 2.63
CPNE1-217ENST00000439669 TM4SF1P30408 202 aa31.49■■■□□ 2.63
CPNE1-217ENST00000439669 NFIXQ14938 502 aa31.49■■■□□ 2.63
CPNE1-217ENST00000439669 WWC3Q9ULE0 1092 aa31.49■■■□□ 2.63
CPNE1-217ENST00000439669 TRIM35Q9UPQ4 493 aa31.49■■■□□ 2.63
CPNE1-217ENST00000439669 SCN7AQ01118 1682 aa31.48■■■□□ 2.63
CPNE1-217ENST00000439669 KIF13BQ9NQT8 1826 aa31.48■■■□□ 2.63
CPNE1-217ENST00000439669 POLRMTO00411 1230 aaKnown RBP31.48■■■□□ 2.63
CPNE1-217ENST00000439669 GIGYF1O75420 1035 aaPredicted RBP31.48■■■□□ 2.63
CPNE1-217ENST00000439669 YBX3P16989 372 aaKnown RBP eCLIP31.48■■■□□ 2.632e-6■■■■□ 21.8
CPNE1-217ENST00000439669 MRS2Q9HD23 443 aa31.47■■■□□ 2.63
CPNE1-217ENST00000439669 APAF1O14727 1248 aa31.46■■■□□ 2.63
CPNE1-217ENST00000439669 BICDL1Q6ZP65 573 aa31.46■■■□□ 2.63
CPNE1-217ENST00000439669 DZIP3Q86Y13 1208 aaKnown RBP31.46■■■□□ 2.63
CPNE1-217ENST00000439669 BABAM1Q9NWV8 329 aa31.46■■■□□ 2.63
CPNE1-217ENST00000439669 PXDNLA1KZ92 1463 aa31.46■■■□□ 2.63
CPNE1-217ENST00000439669 LAS1LQ9Y4W2 734 aaKnown RBP31.45■■■□□ 2.63
CPNE1-217ENST00000439669 NBPF26B4DH59 902 aa31.44■■■□□ 2.62
CPNE1-217ENST00000439669 TGFB2P61812 414 aa31.44■■■□□ 2.62
CPNE1-217ENST00000439669 NBPF10Q6P3W6 841 aaKnown RBP31.44■■■□□ 2.62
CPNE1-217ENST00000439669 NBPF15Q8N660 670 aa31.44■■■□□ 2.62
CPNE1-217ENST00000439669 CAMTA2O94983 1202 aa31.43■■■□□ 2.62
CPNE1-217ENST00000439669 GRIN3BO60391 1043 aa31.42■■■□□ 2.62
CPNE1-217ENST00000439669 TBC1D9BQ66K14 1250 aa31.42■■■□□ 2.62
CPNE1-217ENST00000439669 A0A0G2JLW4 131 aa31.41■■■□□ 2.62
CPNE1-217ENST00000439669 KIAA1551Q9HCM1 1747 aa31.41■■■□□ 2.62
CPNE1-217ENST00000439669 N4BP2Q86UW6 1770 aaPredicted RBP31.4■■■□□ 2.62
CPNE1-217ENST00000439669 SERPINB2P05120 415 aa31.4■■■□□ 2.62
CPNE1-217ENST00000439669 BCORQ6W2J9 1755 aa31.4■■■□□ 2.62
CPNE1-217ENST00000439669 DPEP1P16444 411 aa31.39■■■□□ 2.62
CPNE1-217ENST00000439669 CHL1O00533 1208 aa31.38■■■□□ 2.61
CPNE1-217ENST00000439669 AFDNP55196 1824 aaKnown RBP31.38■■■□□ 2.61
CPNE1-217ENST00000439669 CHD4Q14839 1912 aa31.37■■■□□ 2.61
CPNE1-217ENST00000439669 NGEFQ8N5V2 710 aa31.37■■■□□ 2.61
CPNE1-217ENST00000439669 ZNF652Q9Y2D9 606 aa31.36■■■□□ 2.61
CPNE1-217ENST00000439669 NRXN2Q9P2S2 1712 aa31.35■■■□□ 2.61
CPNE1-217ENST00000439669 CARMIL3Q8ND23 1372 aa31.35■■■□□ 2.61
CPNE1-217ENST00000439669 MYL6BP14649 208 aa31.35■■■□□ 2.61
CPNE1-217ENST00000439669 EIF2S2P20042 333 aaKnown RBP31.35■■■□□ 2.61
CPNE1-217ENST00000439669 SETDB2Q96T68 719 aa31.34■■■□□ 2.61
CPNE1-217ENST00000439669 BCS1LQ9Y276 419 aa31.33■■■□□ 2.61
CPNE1-217ENST00000439669 ERBB4Q15303 1308 aa31.32■■■□□ 2.6
CPNE1-217ENST00000439669 CALD1Q05682 793 aaKnown RBP31.32■■■□□ 2.6
CPNE1-217ENST00000439669 CLEC4GQ6UXB4 293 aa31.32■■■□□ 2.6
CPNE1-217ENST00000439669 CFAP44Q96MT7 982 aa31.32■■■□□ 2.6
CPNE1-217ENST00000439669 NPHP1O15259 732 aa31.31■■■□□ 2.6
CPNE1-217ENST00000439669 CHRNA5P30532 468 aa31.31■■■□□ 2.6
CPNE1-217ENST00000439669 KRT24Q2M2I5 525 aa31.31■■■□□ 2.6
CPNE1-217ENST00000439669 SENP3-EIF4A1A0A087X0R7 540 aa31.3■■■□□ 2.6
CPNE1-217ENST00000439669 KIF6Q6ZMV9 814 aa31.29■■■□□ 2.6
CPNE1-217ENST00000439669 NECTIN2Q92692 538 aa31.29■■■□□ 2.6
CPNE1-217ENST00000439669 PIM2Q9P1W9 311 aa31.29■■■□□ 2.6
CPNE1-217ENST00000439669 KCNA3P22001 575 aa31.28■■■□□ 2.6
CPNE1-217ENST00000439669 MBIPQ9NS73 344 aa31.28■■■□□ 2.6
CPNE1-217ENST00000439669 RGL2O15211 777 aa31.27■■■□□ 2.6
CPNE1-217ENST00000439669 TTLL7Q6ZT98 887 aa31.27■■■□□ 2.6
CPNE1-217ENST00000439669 CNBD1Q8NA66 436 aa31.27■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms