RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 RPS6KA4O75676 772 aa15.06■□□□□ 0
COL28A1-203ENST00000435823 PTGER2P43116 358 aa15.06■□□□□ 0
COL28A1-203ENST00000435823 TRAPPC3LQ5T215 181 aa15.06■□□□□ 0
COL28A1-203ENST00000435823 ZNF496Q96IT1 587 aaPredicted RBP15.06■□□□□ 0
COL28A1-203ENST00000435823 TEX13AQ9BXU3 409 aaPredicted RBP15.06■□□□□ 0
COL28A1-203ENST00000435823 HEG1Q9ULI3 1381 aa15.06■□□□□ 0
COL28A1-203ENST00000435823 STARD3NLO95772 234 aa15.05■□□□□ -0
COL28A1-203ENST00000435823 NEUROD2Q15784 382 aa15.05■□□□□ -0
COL28A1-203ENST00000435823 CCDC184Q52MB2 194 aa15.05■□□□□ -0
COL28A1-203ENST00000435823 AMIGO3Q86WK7 504 aa15.05■□□□□ -0
COL28A1-203ENST00000435823 CCDC87Q9NVE4 849 aa15.05■□□□□ -0
COL28A1-203ENST00000435823 RRP7AQ9Y3A4 280 aaKnown RBP15.05■□□□□ -0
COL28A1-203ENST00000435823 KCNQ3O43525 872 aa15.04■□□□□ -0
COL28A1-203ENST00000435823 CYP19A1P11511 503 aaPredicted RBP15.04■□□□□ -0
COL28A1-203ENST00000435823 SMIM5Q71RC9 77 aa15.04■□□□□ -0
COL28A1-203ENST00000435823 ARXQ96QS3 562 aa15.04■□□□□ -0
COL28A1-203ENST00000435823 SGIP1Q9BQI5 828 aa15.04■□□□□ -0
COL28A1-203ENST00000435823 THUMPD2Q9BTF0 503 aaKnown RBP15.04■□□□□ -0
COL28A1-203ENST00000435823 MYH14Q7Z406 1995 aaKnown RBP15.04■□□□□ -0
COL28A1-203ENST00000435823 RFC4P35249 363 aa15.03■□□□□ -0
COL28A1-203ENST00000435823 MSL1Q68DK7 614 aa15.03■□□□□ -0
COL28A1-203ENST00000435823 SAMD1Q6SPF0 538 aaPredicted RBP15.03■□□□□ -0
COL28A1-203ENST00000435823 COL24A1Q17RW2 1714 aa15.03■□□□□ -0
COL28A1-203ENST00000435823 INTS5Q6P9B9 1019 aaKnown RBP15.02■□□□□ -0
COL28A1-203ENST00000435823 ARHGEF1Q92888 912 aaKnown RBP15.02■□□□□ -0
COL28A1-203ENST00000435823 SNRPA1P09661 255 aaKnown RBP15.01□□□□□ -0.01
COL28A1-203ENST00000435823 MIS18AQ9NYP9 233 aa15.01□□□□□ -0.01
COL28A1-203ENST00000435823 SRCAPQ6ZRS2 3230 aa15.01□□□□□ -0.01
COL28A1-203ENST00000435823 APAF1O14727 1248 aa15□□□□□ -0.01
COL28A1-203ENST00000435823 TSPYL4Q9UJ04 414 aa15□□□□□ -0.01
COL28A1-203ENST00000435823 ZBTB1Q9Y2K1 713 aa15□□□□□ -0.01
COL28A1-203ENST00000435823 KDM3BQ7LBC6 1761 aa15□□□□□ -0.01
COL28A1-203ENST00000435823 SOS1Q07889 1333 aaPredicted RBP14.99□□□□□ -0.01
COL28A1-203ENST00000435823 CANXP27824 592 aaKnown RBP14.99□□□□□ -0.01
COL28A1-203ENST00000435823 NPM2Q86SE8 214 aaKnown RBP14.99□□□□□ -0.01
COL28A1-203ENST00000435823 NLGN1Q8N2Q7 840 aa14.99□□□□□ -0.01
COL28A1-203ENST00000435823 BABAM1Q9NWV8 329 aa14.99□□□□□ -0.01
COL28A1-203ENST00000435823 TRIM35Q9UPQ4 493 aa14.99□□□□□ -0.01
COL28A1-203ENST00000435823 C4AP0C0L4 1744 aa14.98□□□□□ -0.01
COL28A1-203ENST00000435823 KLHL34Q8N239 644 aa14.98□□□□□ -0.01
COL28A1-203ENST00000435823 FHDC1Q9C0D6 1143 aaPredicted RBP14.98□□□□□ -0.01
COL28A1-203ENST00000435823 COL15A1P39059 1388 aa14.98□□□□□ -0.01
COL28A1-203ENST00000435823 USP42Q9H9J4 1324 aaKnown RBP14.97□□□□□ -0.01
COL28A1-203ENST00000435823 A0A087WZG4 1122 aa14.97□□□□□ -0.01
COL28A1-203ENST00000435823 ZPR1O75312 459 aa14.97□□□□□ -0.01
COL28A1-203ENST00000435823 EIF4A1P60842 406 aaKnown RBP14.97□□□□□ -0.01
COL28A1-203ENST00000435823 CALD1Q05682 793 aaKnown RBP14.97□□□□□ -0.01
COL28A1-203ENST00000435823 PRAMEF22A3QJZ6 481 aa14.96□□□□□ -0.01
COL28A1-203ENST00000435823 GYS1P13807 737 aa14.96□□□□□ -0.01
COL28A1-203ENST00000435823 IL6STP40189 918 aaPredicted RBP14.96□□□□□ -0.01
COL28A1-203ENST00000435823 ZNF330Q9Y3S2 320 aaPredicted RBP14.96□□□□□ -0.01
COL28A1-203ENST00000435823 LAS1LQ9Y4W2 734 aaKnown RBP14.96□□□□□ -0.01
COL28A1-203ENST00000435823 USP16Q9Y5T5 823 aa14.96□□□□□ -0.01
COL28A1-203ENST00000435823 HAX1O00165 279 aa14.95□□□□□ -0.02
COL28A1-203ENST00000435823 GIGYF1O75420 1035 aaPredicted RBP14.95□□□□□ -0.02
COL28A1-203ENST00000435823 A1BGP04217 495 aa14.95□□□□□ -0.02
COL28A1-203ENST00000435823 MMP10P09238 476 aa14.95□□□□□ -0.02
COL28A1-203ENST00000435823 EIF5P55010 431 aaKnown RBP14.95□□□□□ -0.02
COL28A1-203ENST00000435823 SYT17Q9BSW7 474 aa14.95□□□□□ -0.02
COL28A1-203ENST00000435823 SRP68Q9UHB9 627 aaKnown RBP14.95□□□□□ -0.02
COL28A1-203ENST00000435823 NARFQ9UHQ1 456 aa14.95□□□□□ -0.02
COL28A1-203ENST00000435823 LAMB4A4D0S4 1761 aa14.95□□□□□ -0.02
COL28A1-203ENST00000435823 USPL1Q5W0Q7 1092 aa14.94□□□□□ -0.02
COL28A1-203ENST00000435823 FAM9BQ8IZU0 186 aa14.94□□□□□ -0.02
COL28A1-203ENST00000435823 CHL1O00533 1208 aa14.93□□□□□ -0.02
COL28A1-203ENST00000435823 CFAP44Q96MT7 982 aa14.93□□□□□ -0.02
COL28A1-203ENST00000435823 PARP3Q9Y6F1 533 aa14.93□□□□□ -0.02
COL28A1-203ENST00000435823 GNAI1P63096 354 aa14.91□□□□□ -0.02
COL28A1-203ENST00000435823 FKBP8Q14318 412 aa14.91□□□□□ -0.02
COL28A1-203ENST00000435823 CCDC27Q2M243 656 aa14.91□□□□□ -0.02
COL28A1-203ENST00000435823 IFT57Q9NWB7 429 aa14.91□□□□□ -0.02
COL28A1-203ENST00000435823 CD2APQ9Y5K6 639 aa14.91□□□□□ -0.02
COL28A1-203ENST00000435823 PIP4K2AP48426 406 aaPredicted RBP14.9□□□□□ -0.02
COL28A1-203ENST00000435823 DZIP3Q86Y13 1208 aaKnown RBP14.9□□□□□ -0.02
COL28A1-203ENST00000435823 TBC1D2BQ9UPU7 963 aa14.9□□□□□ -0.02
COL28A1-203ENST00000435823 ERBB4Q15303 1308 aa14.9□□□□□ -0.02
COL28A1-203ENST00000435823 SENP3-EIF4A1A0A087X0R7 540 aa14.89□□□□□ -0.03
COL28A1-203ENST00000435823 NBPF26B4DH59 902 aa14.89□□□□□ -0.03
COL28A1-203ENST00000435823 CCER2I3L3R5 266 aa14.89□□□□□ -0.03
COL28A1-203ENST00000435823 DIEXFQ68CQ4 756 aaKnown RBP14.89□□□□□ -0.03
COL28A1-203ENST00000435823 NBPF10Q6P3W6 841 aaKnown RBP14.89□□□□□ -0.03
COL28A1-203ENST00000435823 NBPF15Q8N660 670 aa14.89□□□□□ -0.03
COL28A1-203ENST00000435823 MBIPQ9NS73 344 aa14.89□□□□□ -0.03
COL28A1-203ENST00000435823 SCN7AQ01118 1682 aa14.89□□□□□ -0.03
COL28A1-203ENST00000435823 ZNF853P0CG23 659 aa14.88□□□□□ -0.03
COL28A1-203ENST00000435823 EIF2S2P20042 333 aaKnown RBP14.88□□□□□ -0.03
COL28A1-203ENST00000435823 BCL2L12Q9HB09 334 aa14.88□□□□□ -0.03
COL28A1-203ENST00000435823 CAMTA2O94983 1202 aa14.87□□□□□ -0.03
COL28A1-203ENST00000435823 MYL6BP14649 208 aa14.87□□□□□ -0.03
COL28A1-203ENST00000435823 TM4SF1P30408 202 aa14.87□□□□□ -0.03
COL28A1-203ENST00000435823 DDR1Q08345 913 aa14.87□□□□□ -0.03
COL28A1-203ENST00000435823 NFIXQ14938 502 aa14.87□□□□□ -0.03
COL28A1-203ENST00000435823 WWC1Q8IX03 1113 aa14.87□□□□□ -0.03
COL28A1-203ENST00000435823 NGEFQ8N5V2 710 aa14.87□□□□□ -0.03
COL28A1-203ENST00000435823 NLGN2Q8NFZ4 835 aa14.87□□□□□ -0.03
COL28A1-203ENST00000435823 ZNF652Q9Y2D9 606 aa14.87□□□□□ -0.03
COL28A1-203ENST00000435823 BCORQ6W2J9 1755 aa14.86□□□□□ -0.03
COL28A1-203ENST00000435823 C10orf71Q711Q0 1435 aa14.86□□□□□ -0.03
COL28A1-203ENST00000435823 POLRMTO00411 1230 aaKnown RBP14.86□□□□□ -0.03
COL28A1-203ENST00000435823 HOXB7P09629 217 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms