RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 STARD3NLO95772 234 aa12.09□□□□□ -0.47
SMC1A-203ENST00000428014 TRAPPC3LQ5T215 181 aa12.09□□□□□ -0.47
SMC1A-203ENST00000428014 FMNL2Q96PY5 1086 aa12.09□□□□□ -0.47
SMC1A-203ENST00000428014 CD2APQ9Y5K6 639 aa12.09□□□□□ -0.47
SMC1A-203ENST00000428014 MAPK8IP3Q9UPT6 1336 aa12.09□□□□□ -0.47
SMC1A-203ENST00000428014 CYP19A1P11511 503 aaPredicted RBP12.08□□□□□ -0.48
SMC1A-203ENST00000428014 TAF7Q15545 349 aaPredicted RBP12.08□□□□□ -0.48
SMC1A-203ENST00000428014 RBM42Q9BTD8 480 aaKnown RBP12.08□□□□□ -0.48
SMC1A-203ENST00000428014 GNPATO15228 680 aa12.07□□□□□ -0.48
SMC1A-203ENST00000428014 CRKLP46109 303 aaKnown RBP12.07□□□□□ -0.48
SMC1A-203ENST00000428014 KCNQ4P56696 695 aa12.07□□□□□ -0.48
SMC1A-203ENST00000428014 SYT17Q9BSW7 474 aa12.07□□□□□ -0.48
SMC1A-203ENST00000428014 CCDC87Q9NVE4 849 aa12.07□□□□□ -0.48
SMC1A-203ENST00000428014 BTBD11A6QL63 1104 aa12.06□□□□□ -0.48
SMC1A-203ENST00000428014 PTCD1O75127 700 aaKnown RBP12.06□□□□□ -0.48
SMC1A-203ENST00000428014 INTS5Q6P9B9 1019 aaKnown RBP12.06□□□□□ -0.48
SMC1A-203ENST00000428014 RUNDC1Q96C34 613 aa12.06□□□□□ -0.48
SMC1A-203ENST00000428014 SOS1Q07889 1333 aaPredicted RBP12.06□□□□□ -0.48
SMC1A-203ENST00000428014 A0A087WZG4 1122 aa12.05□□□□□ -0.48
SMC1A-203ENST00000428014 IL6STP40189 918 aaPredicted RBP12.05□□□□□ -0.48
SMC1A-203ENST00000428014 WDR43Q15061 677 aaKnown RBP eCLIP12.05□□□□□ -0.483e-7■■□□□ 12
SMC1A-203ENST00000428014 NGEFQ8N5V2 710 aa12.05□□□□□ -0.48
SMC1A-203ENST00000428014 ZNF496Q96IT1 587 aaPredicted RBP12.05□□□□□ -0.48
SMC1A-203ENST00000428014 DLG5Q8TDM6 1919 aa12.05□□□□□ -0.48
SMC1A-203ENST00000428014 ERBB4Q15303 1308 aa12.05□□□□□ -0.48
SMC1A-203ENST00000428014 USP42Q9H9J4 1324 aaKnown RBP12.05□□□□□ -0.48
SMC1A-203ENST00000428014 SNRPA1P09661 255 aaKnown RBP12.04□□□□□ -0.48
SMC1A-203ENST00000428014 RFC4P35249 363 aa12.04□□□□□ -0.48
SMC1A-203ENST00000428014 TMPOP42166 694 aaKnown RBP12.04□□□□□ -0.48
SMC1A-203ENST00000428014 EIF5P55010 431 aaKnown RBP12.04□□□□□ -0.48
SMC1A-203ENST00000428014 DNAJC10Q8IXB1 793 aa12.04□□□□□ -0.48
SMC1A-203ENST00000428014 ARHGEF1Q92888 912 aaKnown RBP12.04□□□□□ -0.48
SMC1A-203ENST00000428014 FHDC1Q9C0D6 1143 aaPredicted RBP12.04□□□□□ -0.48
SMC1A-203ENST00000428014 KIF13BQ9NQT8 1826 aa12.03□□□□□ -0.48
SMC1A-203ENST00000428014 GYS1P13807 737 aa12.03□□□□□ -0.48
SMC1A-203ENST00000428014 SLC39A6Q13433 755 aa12.03□□□□□ -0.48
SMC1A-203ENST00000428014 CNGB1Q14028 1251 aaPredicted RBP12.03□□□□□ -0.48
SMC1A-203ENST00000428014 AMIGO3Q86WK7 504 aa12.03□□□□□ -0.48
SMC1A-203ENST00000428014 NARFQ9UHQ1 456 aa12.03□□□□□ -0.48
SMC1A-203ENST00000428014 C4AP0C0L4 1744 aa12.03□□□□□ -0.48
SMC1A-203ENST00000428014 KDM3BQ7LBC6 1761 aa12.02□□□□□ -0.48
SMC1A-203ENST00000428014 CALD1Q05682 793 aaKnown RBP12.02□□□□□ -0.49
SMC1A-203ENST00000428014 COL15A1P39059 1388 aa12.02□□□□□ -0.49
SMC1A-203ENST00000428014 ANP32CO43423 234 aa12.01□□□□□ -0.49
SMC1A-203ENST00000428014 HOXB7P09629 217 aa12.01□□□□□ -0.49
SMC1A-203ENST00000428014 RIPK4P57078 832 aa12.01□□□□□ -0.49
SMC1A-203ENST00000428014 TGFB2P61812 414 aa12.01□□□□□ -0.49
SMC1A-203ENST00000428014 CCDC27Q2M243 656 aa12.01□□□□□ -0.49
SMC1A-203ENST00000428014 CLEC4GQ6UXB4 293 aa12.01□□□□□ -0.49
SMC1A-203ENST00000428014 MCM10Q7L590 875 aa12.01□□□□□ -0.49
SMC1A-203ENST00000428014 CHMP4AQ9BY43 222 aa12.01□□□□□ -0.49
SMC1A-203ENST00000428014 ADAMTS8Q9UP79 889 aa12.01□□□□□ -0.49
SMC1A-203ENST00000428014 PDZRN3Q9UPQ7 1066 aa12.01□□□□□ -0.49
SMC1A-203ENST00000428014 ZPR1O75312 459 aa12□□□□□ -0.49
SMC1A-203ENST00000428014 ZBTB1Q9Y2K1 713 aa12□□□□□ -0.49
SMC1A-203ENST00000428014 C10orf71Q711Q0 1435 aa12□□□□□ -0.49
SMC1A-203ENST00000428014 LAMB4A4D0S4 1761 aa12□□□□□ -0.49
SMC1A-203ENST00000428014 GIGYF1O75420 1035 aaPredicted RBP11.99□□□□□ -0.49
SMC1A-203ENST00000428014 PHF14O94880 888 aa11.99□□□□□ -0.49
SMC1A-203ENST00000428014 TM4SF1P30408 202 aa11.99□□□□□ -0.49
SMC1A-203ENST00000428014 EIF4A1P60842 406 aaKnown RBP11.99□□□□□ -0.49
SMC1A-203ENST00000428014 NRXN2Q9P2S2 1712 aa11.98□□□□□ -0.49
SMC1A-203ENST00000428014 CHL1O00533 1208 aa11.98□□□□□ -0.49
SMC1A-203ENST00000428014 GRIN3BO60391 1043 aa11.98□□□□□ -0.49
SMC1A-203ENST00000428014 MMP10P09238 476 aa11.98□□□□□ -0.49
SMC1A-203ENST00000428014 NPM2Q86SE8 214 aaKnown RBP11.98□□□□□ -0.49
SMC1A-203ENST00000428014 CFAP44Q96MT7 982 aa11.97□□□□□ -0.49
SMC1A-203ENST00000428014 PARP3Q9Y6F1 533 aa11.97□□□□□ -0.49
SMC1A-203ENST00000428014 SCN7AQ01118 1682 aa11.97□□□□□ -0.49
SMC1A-203ENST00000428014 ERVV-1B6SEH8 477 aa11.96□□□□□ -0.49
SMC1A-203ENST00000428014 DCTN1Q14203 1278 aa11.96□□□□□ -0.49
SMC1A-203ENST00000428014 TRIM35Q9UPQ4 493 aa11.96□□□□□ -0.49
SMC1A-203ENST00000428014 USP16Q9Y5T5 823 aa11.96□□□□□ -0.49
SMC1A-203ENST00000428014 IL16Q14005 1332 aa11.95□□□□□ -0.5
SMC1A-203ENST00000428014 POLRMTO00411 1230 aaKnown RBP11.95□□□□□ -0.5
SMC1A-203ENST00000428014 ZNF853P0CG23 659 aa11.95□□□□□ -0.5
SMC1A-203ENST00000428014 ZNF652Q9Y2D9 606 aa11.95□□□□□ -0.5
SMC1A-203ENST00000428014 CHD4Q14839 1912 aa11.95□□□□□ -0.5
SMC1A-203ENST00000428014 IBTKQ9P2D0 1353 aaPredicted RBP11.94□□□□□ -0.5
SMC1A-203ENST00000428014 KCNQ3O43525 872 aa11.94□□□□□ -0.5
SMC1A-203ENST00000428014 USPL1Q5W0Q7 1092 aa11.94□□□□□ -0.5
SMC1A-203ENST00000428014 BCL2L12Q9HB09 334 aa11.94□□□□□ -0.5
SMC1A-203ENST00000428014 IFT57Q9NWB7 429 aa11.94□□□□□ -0.5
SMC1A-203ENST00000428014 TSPYL4Q9UJ04 414 aa11.94□□□□□ -0.5
SMC1A-203ENST00000428014 BCORQ6W2J9 1755 aa11.94□□□□□ -0.5
SMC1A-203ENST00000428014 CARMIL3Q8ND23 1372 aa11.93□□□□□ -0.5
SMC1A-203ENST00000428014 CAMTA2O94983 1202 aa11.93□□□□□ -0.5
SMC1A-203ENST00000428014 GNAI1P63096 354 aa11.93□□□□□ -0.5
SMC1A-203ENST00000428014 MSL1Q68DK7 614 aa11.93□□□□□ -0.5
SMC1A-203ENST00000428014 PXDNLA1KZ92 1463 aa11.93□□□□□ -0.5
SMC1A-203ENST00000428014 RIC1Q4ADV7 1423 aa11.93□□□□□ -0.5
SMC1A-203ENST00000428014 KIAA1551Q9HCM1 1747 aa11.92□□□□□ -0.5
SMC1A-203ENST00000428014 CANXP27824 592 aaKnown RBP11.92□□□□□ -0.5
SMC1A-203ENST00000428014 NFIXQ14938 502 aa11.92□□□□□ -0.5
SMC1A-203ENST00000428014 FBXO3Q9UK99 471 aa11.92□□□□□ -0.5
SMC1A-203ENST00000428014 ATP10DQ9P241 1426 aa11.92□□□□□ -0.5
SMC1A-203ENST00000428014 BRCA1P38398 1863 aaKnown RBP11.91□□□□□ -0.5
SMC1A-203ENST00000428014 RNF123Q5XPI4 1314 aa11.91□□□□□ -0.5
SMC1A-203ENST00000428014 NBPF26B4DH59 902 aa11.91□□□□□ -0.5
SMC1A-203ENST00000428014 APAF1O14727 1248 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms