RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 C4orf17Q53FE4 359 aa7.65□□□□□ -1.18
USP40-204ENST00000427947 TAS1R3Q7RTX0 852 aa7.65□□□□□ -1.18
USP40-204ENST00000427947 SENP2Q9HC62 589 aa7.65□□□□□ -1.18
USP40-204ENST00000427947 PARP3Q9Y6F1 533 aa7.65□□□□□ -1.18
USP40-204ENST00000427947 SPATA31C2B4DYI2 1134 aa7.64□□□□□ -1.19
USP40-204ENST00000427947 FOXO3O43524 673 aa7.64□□□□□ -1.19
USP40-204ENST00000427947 SCNN1AP37088 669 aa7.64□□□□□ -1.19
USP40-204ENST00000427947 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.64□□□□□ -1.19
USP40-204ENST00000427947 PHLDB3Q6NSJ2 640 aa7.64□□□□□ -1.19
USP40-204ENST00000427947 AEBP1Q8IUX7 1158 aa7.64□□□□□ -1.19
USP40-204ENST00000427947 ZNF295-AS1Q8N0V1 137 aa7.64□□□□□ -1.19
USP40-204ENST00000427947 ZDHHC1Q8WTX9 485 aa7.64□□□□□ -1.19
USP40-204ENST00000427947 L3MBTL2Q969R5 705 aa7.64□□□□□ -1.19
USP40-204ENST00000427947 KIFC2Q96AC6 838 aa7.64□□□□□ -1.19
USP40-204ENST00000427947 VTI1AQ96AJ9 217 aa7.64□□□□□ -1.19
USP40-204ENST00000427947 SERTM1A2A2V5 107 aa7.63□□□□□ -1.19
USP40-204ENST00000427947 NOS2P35228 1153 aa7.63□□□□□ -1.19
USP40-204ENST00000427947 SH3PXD2AQ5TCZ1 1133 aa7.63□□□□□ -1.19
USP40-204ENST00000427947 NBPF10Q6P3W6 841 aaKnown RBP7.63□□□□□ -1.19
USP40-204ENST00000427947 TRIM47Q96LD4 638 aa7.63□□□□□ -1.19
USP40-204ENST00000427947 C2orf49Q9BVC5 232 aaPredicted RBP7.63□□□□□ -1.19
USP40-204ENST00000427947 EML1O00423 815 aa7.62□□□□□ -1.19
USP40-204ENST00000427947 TEAD4Q15561 434 aa7.62□□□□□ -1.19
USP40-204ENST00000427947 STAG2Q8N3U4 1231 aa7.62□□□□□ -1.19
USP40-204ENST00000427947 C1orf216Q8TAB5 229 aa7.62□□□□□ -1.19
USP40-204ENST00000427947 AIDAQ96BJ3 306 aa7.62□□□□□ -1.19
USP40-204ENST00000427947 C11orf95C9JLR9 678 aaPredicted RBP7.61□□□□□ -1.19
USP40-204ENST00000427947 CAPN12Q6ZSI9 719 aa7.61□□□□□ -1.19
USP40-204ENST00000427947 KCTD17Q8N5Z5 321 aa7.61□□□□□ -1.19
USP40-204ENST00000427947 NGLY1Q96IV0 654 aa7.61□□□□□ -1.19
USP40-204ENST00000427947 TIMMDC1Q9NPL8 285 aa7.61□□□□□ -1.19
USP40-204ENST00000427947 PTCD1O75127 700 aaKnown RBP7.6□□□□□ -1.19
USP40-204ENST00000427947 SNRPBP14678 240 aaKnown RBP7.6□□□□□ -1.19
USP40-204ENST00000427947 TXLNAP40222 546 aa7.6□□□□□ -1.19
USP40-204ENST00000427947 NBPF1Q3BBV0 1214 aa7.6□□□□□ -1.19
USP40-204ENST00000427947 WDR44Q5JSH3 913 aa7.6□□□□□ -1.19
USP40-204ENST00000427947 POTEAQ6S8J7 498 aa7.6□□□□□ -1.19
USP40-204ENST00000427947 HCN4Q9Y3Q4 1203 aa7.6□□□□□ -1.19
USP40-204ENST00000427947 HIRAP54198 1017 aaPredicted RBP7.59□□□□□ -1.19
USP40-204ENST00000427947 KCNA1Q09470 495 aa7.59□□□□□ -1.19
USP40-204ENST00000427947 NAA30Q147X3 362 aaPredicted RBP7.59□□□□□ -1.19
USP40-204ENST00000427947 PHACTR1Q9C0D0 580 aa7.59□□□□□ -1.19
USP40-204ENST00000427947 SEPT3Q9UH03 358 aa7.59□□□□□ -1.19
USP40-204ENST00000427947 A0A1B0GTH6 734 aa7.58□□□□□ -1.2
USP40-204ENST00000427947 ARID4AP29374 1257 aaPredicted RBP7.58□□□□□ -1.2
USP40-204ENST00000427947 PTSQ03393 145 aa7.58□□□□□ -1.2
USP40-204ENST00000427947 ALDH16A1Q8IZ83 802 aa7.58□□□□□ -1.2
USP40-204ENST00000427947 COL26A1Q96A83 441 aa7.58□□□□□ -1.2
USP40-204ENST00000427947 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.58□□□□□ -1.2
USP40-204ENST00000427947 MTMR7Q9Y216 660 aa7.58□□□□□ -1.2
USP40-204ENST00000427947 SENP3-EIF4A1A0A087X0R7 540 aa7.57□□□□□ -1.2
USP40-204ENST00000427947 POTECB2RU33 542 aa7.57□□□□□ -1.2
USP40-204ENST00000427947 PATL2C9JE40 543 aaKnown RBP7.57□□□□□ -1.2
USP40-204ENST00000427947 TATP17735 454 aaPredicted RBP7.57□□□□□ -1.2
USP40-204ENST00000427947 ATP4AP20648 1035 aa7.57□□□□□ -1.2
USP40-204ENST00000427947 SERPINB4P48594 390 aa7.57□□□□□ -1.2
USP40-204ENST00000427947 CCER1Q8TC90 406 aaPredicted RBP7.57□□□□□ -1.2
USP40-204ENST00000427947 GAS2L1Q99501 681 aaPredicted RBP7.57□□□□□ -1.2
USP40-204ENST00000427947 QTRT2Q9H974 415 aaKnown RBP7.57□□□□□ -1.2
USP40-204ENST00000427947 GPAMQ9HCL2 828 aa7.57□□□□□ -1.2
USP40-204ENST00000427947 ZDHHC3Q9NYG2 299 aa7.57□□□□□ -1.2
USP40-204ENST00000427947 DYRK1BQ9Y463 629 aa7.57□□□□□ -1.2
USP40-204ENST00000427947 IVNS1ABPQ9Y6Y0 642 aa7.57□□□□□ -1.2
USP40-204ENST00000427947 ABL1P00519 1130 aa7.56□□□□□ -1.2
USP40-204ENST00000427947 MSX1P28360 303 aa7.56□□□□□ -1.2
USP40-204ENST00000427947 C16orf46Q6P387 395 aa7.56□□□□□ -1.2
USP40-204ENST00000427947 TXNDC2Q86VQ3 553 aa7.56□□□□□ -1.2
USP40-204ENST00000427947 RHPN1Q8TCX5 695 aa7.56□□□□□ -1.2
USP40-204ENST00000427947 ARSJQ5FYB0 599 aaPredicted RBP7.55□□□□□ -1.2
USP40-204ENST00000427947 BICDL1Q6ZP65 573 aa7.55□□□□□ -1.2
USP40-204ENST00000427947 GTF3C2Q8WUA4 911 aaPredicted RBP7.55□□□□□ -1.2
USP40-204ENST00000427947 SAP130Q9H0E3 1048 aa7.55□□□□□ -1.2
USP40-204ENST00000427947 GNEQ9Y223 722 aaKnown RBP7.55□□□□□ -1.2
USP40-204ENST00000427947 ZBTB7CA1YPR0 619 aa7.54□□□□□ -1.2
USP40-204ENST00000427947 SLC35F4A4IF30 521 aa7.54□□□□□ -1.2
USP40-204ENST00000427947 ZNF211Q13398 564 aaPredicted RBP7.54□□□□□ -1.2
USP40-204ENST00000427947 RTN1Q16799 776 aa7.54□□□□□ -1.2
USP40-204ENST00000427947 COX20Q5RI15 118 aa7.54□□□□□ -1.2
USP40-204ENST00000427947 C1orf53Q5VUE5 145 aa7.54□□□□□ -1.2
USP40-204ENST00000427947 RIPOR1Q6ZS17 1223 aa7.54□□□□□ -1.2
USP40-204ENST00000427947 CCDC155Q8N6L0 562 aa7.54□□□□□ -1.2
USP40-204ENST00000427947 MYO19Q96H55 970 aa7.54□□□□□ -1.2
USP40-204ENST00000427947 RUBCNLQ9H714 662 aa7.54□□□□□ -1.2
USP40-204ENST00000427947 LRFN2Q9ULH4 789 aa7.54□□□□□ -1.2
USP40-204ENST00000427947 F11P03951 625 aa7.53□□□□□ -1.2
USP40-204ENST00000427947 DGKZQ13574 1117 aa7.53□□□□□ -1.2
USP40-204ENST00000427947 MTMR3Q13615 1198 aa7.53□□□□□ -1.2
USP40-204ENST00000427947 PGBD3Q8N328 593 aa7.53□□□□□ -1.2
USP40-204ENST00000427947 HELQQ8TDG4 1101 aa7.53□□□□□ -1.2
USP40-204ENST00000427947 ANO2Q9NQ90 1003 aa7.53□□□□□ -1.2
USP40-204ENST00000427947 DNMT3AQ9Y6K1 912 aaPredicted RBP7.53□□□□□ -1.2
USP40-204ENST00000427947 TRIM26Q12899 539 aaPredicted RBP7.52□□□□□ -1.21
USP40-204ENST00000427947 ZIC5Q96T25 663 aa7.52□□□□□ -1.21
USP40-204ENST00000427947 KLK14Q9P0G3 267 aa7.52□□□□□ -1.21
USP40-204ENST00000427947 A0A1W2PNR3 127 aa7.51□□□□□ -1.21
USP40-204ENST00000427947 H3BRB1 525 aa7.51□□□□□ -1.21
USP40-204ENST00000427947 C7orf43Q8WVR3 580 aa7.51□□□□□ -1.21
USP40-204ENST00000427947 KLRG1Q96E93 195 aa7.51□□□□□ -1.21
USP40-204ENST00000427947 HSH2DQ96JZ2 352 aa7.51□□□□□ -1.21
USP40-204ENST00000427947 CRISPLD1Q9H336 500 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms