RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 CRKLP46109 303 aaKnown RBP15.67■□□□□ 0.1
LINC00539-202ENST00000423575 TEX13AQ9BXU3 409 aaPredicted RBP15.67■□□□□ 0.1
LINC00539-202ENST00000423575 C4BP0C0L5 1744 aa15.67■□□□□ 0.1
LINC00539-202ENST00000423575 TAF1LQ8IZX4 1826 aa15.66■□□□□ 0.1
LINC00539-202ENST00000423575 STARD3NLO95772 234 aa15.66■□□□□ 0.1
LINC00539-202ENST00000423575 INTS5Q6P9B9 1019 aaKnown RBP15.66■□□□□ 0.1
LINC00539-202ENST00000423575 AKT1S1Q96B36 256 aa15.66■□□□□ 0.1
LINC00539-202ENST00000423575 LAMB4A4D0S4 1761 aa15.65■□□□□ 0.1
LINC00539-202ENST00000423575 A1BGP04217 495 aa15.65■□□□□ 0.1
LINC00539-202ENST00000423575 TWISTNBQ3B726 338 aaPredicted RBP15.65■□□□□ 0.1
LINC00539-202ENST00000423575 RC3H1Q5TC82 1133 aaKnown RBP15.65■□□□□ 0.1
LINC00539-202ENST00000423575 AMIGO3Q86WK7 504 aa15.65■□□□□ 0.1
LINC00539-202ENST00000423575 AK7Q96M32 723 aa15.65■□□□□ 0.1
LINC00539-202ENST00000423575 CCDC87Q9NVE4 849 aa15.65■□□□□ 0.1
LINC00539-202ENST00000423575 ZBTB1Q9Y2K1 713 aa15.65■□□□□ 0.1
LINC00539-202ENST00000423575 EIF2S2P20042 333 aaKnown RBP15.64■□□□□ 0.09
LINC00539-202ENST00000423575 HDGFL1Q5TGJ6 251 aa15.64■□□□□ 0.09
LINC00539-202ENST00000423575 NECTIN2Q92692 538 aa15.64■□□□□ 0.09
LINC00539-202ENST00000423575 STK32BQ9NY57 414 aa15.64■□□□□ 0.09
LINC00539-202ENST00000423575 SOS1Q07889 1333 aaPredicted RBP15.64■□□□□ 0.09
LINC00539-202ENST00000423575 NBPF26B4DH59 902 aa15.63■□□□□ 0.09
LINC00539-202ENST00000423575 GNPATO15228 680 aa15.63■□□□□ 0.09
LINC00539-202ENST00000423575 HMGB2P26583 209 aaKnown RBP15.63■□□□□ 0.09
LINC00539-202ENST00000423575 PIP4K2AP48426 406 aaPredicted RBP15.63■□□□□ 0.09
LINC00539-202ENST00000423575 NBPF14Q5TI25 921 aa15.63■□□□□ 0.09
LINC00539-202ENST00000423575 NBPF10Q6P3W6 841 aaKnown RBP15.63■□□□□ 0.09
LINC00539-202ENST00000423575 SMIM5Q71RC9 77 aa15.63■□□□□ 0.09
LINC00539-202ENST00000423575 NBPF15Q8N660 670 aa15.63■□□□□ 0.09
LINC00539-202ENST00000423575 MYH14Q7Z406 1995 aaKnown RBP15.62■□□□□ 0.09
LINC00539-202ENST00000423575 VAMP4O75379 141 aa15.62■□□□□ 0.09
LINC00539-202ENST00000423575 CANXP27824 592 aaKnown RBP15.62■□□□□ 0.09
LINC00539-202ENST00000423575 SLC15A2Q16348 729 aa15.62■□□□□ 0.09
LINC00539-202ENST00000423575 PROSER3Q2NL68 480 aa15.62■□□□□ 0.09
LINC00539-202ENST00000423575 ERBB4Q15303 1308 aa15.62■□□□□ 0.09
LINC00539-202ENST00000423575 RPS6KA4O75676 772 aa15.61■□□□□ 0.09
LINC00539-202ENST00000423575 PDIA6Q15084 440 aa15.61■□□□□ 0.09
LINC00539-202ENST00000423575 TFCP2L1Q9NZI6 479 aa15.61■□□□□ 0.09
LINC00539-202ENST00000423575 ANXA1P04083 346 aa15.6■□□□□ 0.09
LINC00539-202ENST00000423575 CHPF2Q9P2E5 772 aa15.6■□□□□ 0.09
LINC00539-202ENST00000423575 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.59■□□□□ 0.09
LINC00539-202ENST00000423575 TCERG1O14776 1098 aaKnown RBP15.59■□□□□ 0.09
LINC00539-202ENST00000423575 PHF14O94880 888 aa15.59■□□□□ 0.09
LINC00539-202ENST00000423575 IL6STP40189 918 aaPredicted RBP15.59■□□□□ 0.09
LINC00539-202ENST00000423575 EIF5P55010 431 aaKnown RBP15.59■□□□□ 0.09
LINC00539-202ENST00000423575 LRP10Q7Z4F1 713 aa15.59■□□□□ 0.09
LINC00539-202ENST00000423575 DDX21Q9NR30 783 aaKnown RBP eCLIP15.59■□□□□ 0.09
LINC00539-202ENST00000423575 RTCBQ9Y3I0 505 aaKnown RBP15.59■□□□□ 0.09
LINC00539-202ENST00000423575 PNPLA7Q6ZV29 1317 aa15.59■□□□□ 0.09
LINC00539-202ENST00000423575 COL15A1P39059 1388 aa15.59■□□□□ 0.09
LINC00539-202ENST00000423575 UBR3Q6ZT12 1888 aa15.59■□□□□ 0.09
LINC00539-202ENST00000423575 MYL6BP14649 208 aa15.58■□□□□ 0.08
LINC00539-202ENST00000423575 SSFA2P28290 1259 aa15.58■□□□□ 0.08
LINC00539-202ENST00000423575 R3HDM1Q15032 1099 aaKnown RBP15.58■□□□□ 0.08
LINC00539-202ENST00000423575 CCDC30Q5VVM6 783 aa15.58■□□□□ 0.08
LINC00539-202ENST00000423575 ZNF330Q9Y3S2 320 aaPredicted RBP15.58■□□□□ 0.08
LINC00539-202ENST00000423575 TUBGCP6Q96RT7 1819 aa15.58■□□□□ 0.08
LINC00539-202ENST00000423575 CT47B1P0C2W7 299 aaPredicted RBP15.57■□□□□ 0.08
LINC00539-202ENST00000423575 ADRA2BP18089 450 aa15.57■□□□□ 0.08
LINC00539-202ENST00000423575 DBF4Q9UBU7 674 aaPredicted RBP15.57■□□□□ 0.08
LINC00539-202ENST00000423575 PSDA5PKW4 1024 aaPredicted RBP15.56■□□□□ 0.08
LINC00539-202ENST00000423575 COL23A1Q86Y22 540 aaPredicted RBP15.56■□□□□ 0.08
LINC00539-202ENST00000423575 ARHGEF1Q92888 912 aaKnown RBP15.56■□□□□ 0.08
LINC00539-202ENST00000423575 CHMP4AQ9BY43 222 aa15.56■□□□□ 0.08
LINC00539-202ENST00000423575 PDGFDQ9GZP0 370 aaPredicted RBP15.56■□□□□ 0.08
LINC00539-202ENST00000423575 TRAPPC3LQ5T215 181 aa15.55■□□□□ 0.08
LINC00539-202ENST00000423575 STK31Q9BXU1 1019 aa15.55■□□□□ 0.08
LINC00539-202ENST00000423575 TTLL7Q6ZT98 887 aa15.54■□□□□ 0.08
LINC00539-202ENST00000423575 FLAD1Q8NFF5 587 aa15.54■□□□□ 0.08
LINC00539-202ENST00000423575 XAGE3Q8WTP9 111 aa15.54■□□□□ 0.08
LINC00539-202ENST00000423575 SSH1Q8WYL5 1049 aa15.54■□□□□ 0.08
LINC00539-202ENST00000423575 ZNF428Q96B54 188 aa15.54■□□□□ 0.08
LINC00539-202ENST00000423575 BCL2L13Q9BXK5 485 aa15.54■□□□□ 0.08
LINC00539-202ENST00000423575 HYPKQ9NX55 129 aa15.54■□□□□ 0.08
LINC00539-202ENST00000423575 SRP68Q9UHB9 627 aaKnown RBP15.54■□□□□ 0.08
LINC00539-202ENST00000423575 QSER1Q2KHR3 1735 aa15.54■□□□□ 0.08
LINC00539-202ENST00000423575 USP42Q9H9J4 1324 aaKnown RBP15.53■□□□□ 0.08
LINC00539-202ENST00000423575 SLC4A2P04920 1241 aa15.53■□□□□ 0.08
LINC00539-202ENST00000423575 RARSP54136 660 aaKnown RBP15.53■□□□□ 0.08
LINC00539-202ENST00000423575 COPS6Q7L5N1 327 aa15.53■□□□□ 0.08
LINC00539-202ENST00000423575 G2E3Q7L622 706 aa15.53■□□□□ 0.08
LINC00539-202ENST00000423575 DZIP3Q86Y13 1208 aaKnown RBP15.53■□□□□ 0.08
LINC00539-202ENST00000423575 PHAXQ9H814 394 aaKnown RBP15.53■□□□□ 0.08
LINC00539-202ENST00000423575 TBC1D2BQ9UPU7 963 aa15.53■□□□□ 0.08
LINC00539-202ENST00000423575 C4AP0C0L4 1744 aa15.53■□□□□ 0.08
LINC00539-202ENST00000423575 A0A087WZG4 1122 aa15.52■□□□□ 0.08
LINC00539-202ENST00000423575 MSH5O43196 834 aa15.52■□□□□ 0.08
LINC00539-202ENST00000423575 CAMTA2O94983 1202 aa15.52■□□□□ 0.08
LINC00539-202ENST00000423575 RFC4P35249 363 aa15.52■□□□□ 0.08
LINC00539-202ENST00000423575 ALDH1L2Q3SY69 923 aa15.52■□□□□ 0.08
LINC00539-202ENST00000423575 NPM2Q86SE8 214 aaKnown RBP15.52■□□□□ 0.08
LINC00539-202ENST00000423575 MRPL50Q8N5N7 158 aaKnown RBP15.52■□□□□ 0.08
LINC00539-202ENST00000423575 SMC4Q9NTJ3 1288 aa15.52■□□□□ 0.08
LINC00539-202ENST00000423575 NARFQ9UHQ1 456 aa15.52■□□□□ 0.08
LINC00539-202ENST00000423575 AIMP1Q12904 312 aaKnown RBP15.51■□□□□ 0.07
LINC00539-202ENST00000423575 ARXQ96QS3 562 aa15.51■□□□□ 0.07
LINC00539-202ENST00000423575 BCL2L12Q9HB09 334 aa15.51■□□□□ 0.07
LINC00539-202ENST00000423575 CASZ1Q86V15 1759 aa15.51■□□□□ 0.07
LINC00539-202ENST00000423575 MAP3K15Q6ZN16 1313 aa15.5■□□□□ 0.07
LINC00539-202ENST00000423575 FLIIQ13045 1269 aa15.5■□□□□ 0.07
LINC00539-202ENST00000423575 USPL1Q5W0Q7 1092 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms