RNA–Protein interactions for RNA: ENST00000422544.2

PDGFC-202, Transcript of platelet derived growth factor C, humanhuman

TSL 5 BASIC

Gene PDGFC, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-202ENST00000422544 AKT1S1Q96B36 256 aa12.08□□□□□ -0.48
PDGFC-202ENST00000422544 MBIPQ9NS73 344 aa12.08□□□□□ -0.48
PDGFC-202ENST00000422544 STK32BQ9NY57 414 aa12.08□□□□□ -0.48
PDGFC-202ENST00000422544 HEG1Q9ULI3 1381 aa12.07□□□□□ -0.48
PDGFC-202ENST00000422544 SNRPA1P09661 255 aaKnown RBP12.07□□□□□ -0.48
PDGFC-202ENST00000422544 SLC15A2Q16348 729 aa12.07□□□□□ -0.48
PDGFC-202ENST00000422544 IL16Q14005 1332 aa12.07□□□□□ -0.48
PDGFC-202ENST00000422544 KCPQ6ZWJ8 1503 aa12.06□□□□□ -0.48
PDGFC-202ENST00000422544 GIGYF1O75420 1035 aaPredicted RBP12.06□□□□□ -0.48
PDGFC-202ENST00000422544 CYP19A1P11511 503 aaPredicted RBP12.06□□□□□ -0.48
PDGFC-202ENST00000422544 HMGB2P26583 209 aaKnown RBP12.06□□□□□ -0.48
PDGFC-202ENST00000422544 HNRNPUQ00839 825 aaKnown RBP eCLIP12.06□□□□□ -0.48
PDGFC-202ENST00000422544 KRT24Q2M2I5 525 aa12.06□□□□□ -0.48
PDGFC-202ENST00000422544 SMIM5Q71RC9 77 aa12.06□□□□□ -0.48
PDGFC-202ENST00000422544 TSR2Q969E8 191 aaKnown RBP12.06□□□□□ -0.48
PDGFC-202ENST00000422544 AK7Q96M32 723 aa12.06□□□□□ -0.48
PDGFC-202ENST00000422544 TEX13AQ9BXU3 409 aaPredicted RBP12.06□□□□□ -0.48
PDGFC-202ENST00000422544 SPINK5Q9NQ38 1064 aaPredicted RBP12.06□□□□□ -0.48
PDGFC-202ENST00000422544 TFCP2L1Q9NZI6 479 aa12.06□□□□□ -0.48
PDGFC-202ENST00000422544 USP16Q9Y5T5 823 aa12.06□□□□□ -0.48
PDGFC-202ENST00000422544 ZNF521Q96K83 1311 aa12.06□□□□□ -0.48
PDGFC-202ENST00000422544 STARD3NLO95772 234 aa12.05□□□□□ -0.48
PDGFC-202ENST00000422544 CRKLP46109 303 aaKnown RBP12.05□□□□□ -0.48
PDGFC-202ENST00000422544 INTS5Q6P9B9 1019 aaKnown RBP12.05□□□□□ -0.48
PDGFC-202ENST00000422544 LY75O60449 1722 aa12.04□□□□□ -0.48
PDGFC-202ENST00000422544 GNPATO15228 680 aa12.04□□□□□ -0.48
PDGFC-202ENST00000422544 A1BGP04217 495 aa12.04□□□□□ -0.48
PDGFC-202ENST00000422544 RC3H1Q5TC82 1133 aaKnown RBP12.04□□□□□ -0.48
PDGFC-202ENST00000422544 AMIGO3Q86WK7 504 aa12.04□□□□□ -0.48
PDGFC-202ENST00000422544 SIPA1L3O60292 1781 aaPredicted RBP12.04□□□□□ -0.48
PDGFC-202ENST00000422544 CNTNAP4Q9C0A0 1308 aa12.04□□□□□ -0.48
PDGFC-202ENST00000422544 VIRMAQ69YN4 1812 aaKnown RBP12.04□□□□□ -0.48
PDGFC-202ENST00000422544 ELL2O00472 640 aaPredicted RBP12.03□□□□□ -0.48
PDGFC-202ENST00000422544 PHF14O94880 888 aa12.03□□□□□ -0.48
PDGFC-202ENST00000422544 EIF2S2P20042 333 aaKnown RBP12.03□□□□□ -0.48
PDGFC-202ENST00000422544 CANXP27824 592 aaKnown RBP12.03□□□□□ -0.48
PDGFC-202ENST00000422544 GOLGA2Q08379 1002 aa12.03□□□□□ -0.48
PDGFC-202ENST00000422544 C8orf58Q8NAV2 365 aa12.03□□□□□ -0.48
PDGFC-202ENST00000422544 CDCA7LQ96GN5 454 aa12.03□□□□□ -0.48
PDGFC-202ENST00000422544 CCDC87Q9NVE4 849 aa12.03□□□□□ -0.48
PDGFC-202ENST00000422544 ZBTB1Q9Y2K1 713 aa12.03□□□□□ -0.48
PDGFC-202ENST00000422544 RPS6KA4O75676 772 aa12.02□□□□□ -0.49
PDGFC-202ENST00000422544 PIP4K2AP48426 406 aaPredicted RBP12.02□□□□□ -0.49
PDGFC-202ENST00000422544 DUSP27Q5VZP5 1158 aa12.02□□□□□ -0.49
PDGFC-202ENST00000422544 MTFR1LQ9H019 292 aa12.02□□□□□ -0.49
PDGFC-202ENST00000422544 MYH16Q9H6N6 1097 aa12.02□□□□□ -0.49
PDGFC-202ENST00000422544 RTCBQ9Y3I0 505 aaKnown RBP12.02□□□□□ -0.49
PDGFC-202ENST00000422544 PNPLA7Q6ZV29 1317 aa12.02□□□□□ -0.49
PDGFC-202ENST00000422544 FANCIQ9NVI1 1328 aa12.02□□□□□ -0.49
PDGFC-202ENST00000422544 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.01□□□□□ -0.49
PDGFC-202ENST00000422544 SLFN5Q08AF3 891 aa12.01□□□□□ -0.49
PDGFC-202ENST00000422544 TRAPPC3LQ5T215 181 aa12.01□□□□□ -0.49
PDGFC-202ENST00000422544 COL23A1Q86Y22 540 aaPredicted RBP12.01□□□□□ -0.49
PDGFC-202ENST00000422544 TSPYL6Q8N831 410 aa12.01□□□□□ -0.49
PDGFC-202ENST00000422544 NECTIN2Q92692 538 aa12.01□□□□□ -0.49
PDGFC-202ENST00000422544 NBPF26B4DH59 902 aa12□□□□□ -0.49
PDGFC-202ENST00000422544 E9PSI1 815 aa12□□□□□ -0.49
PDGFC-202ENST00000422544 SSFA2P28290 1259 aa12□□□□□ -0.49
PDGFC-202ENST00000422544 EXOSC9Q06265 439 aaKnown RBP12□□□□□ -0.49
PDGFC-202ENST00000422544 NBPF10Q6P3W6 841 aaKnown RBP12□□□□□ -0.49
PDGFC-202ENST00000422544 NBPF15Q8N660 670 aa12□□□□□ -0.49
PDGFC-202ENST00000422544 ARHGEF1Q92888 912 aaKnown RBP12□□□□□ -0.49
PDGFC-202ENST00000422544 ZNF330Q9Y3S2 320 aaPredicted RBP12□□□□□ -0.49
PDGFC-202ENST00000422544 UBR2Q8IWV8 1755 aa12□□□□□ -0.49
PDGFC-202ENST00000422544 EIF5P55010 431 aaKnown RBP11.99□□□□□ -0.49
PDGFC-202ENST00000422544 FLAD1Q8NFF5 587 aa11.99□□□□□ -0.49
PDGFC-202ENST00000422544 ARXQ96QS3 562 aa11.99□□□□□ -0.49
PDGFC-202ENST00000422544 SOS1Q07889 1333 aaPredicted RBP11.99□□□□□ -0.49
PDGFC-202ENST00000422544 C4BP0C0L5 1744 aa11.99□□□□□ -0.49
PDGFC-202ENST00000422544 KDM3BQ7LBC6 1761 aa11.99□□□□□ -0.49
PDGFC-202ENST00000422544 HOXB7P09629 217 aa11.98□□□□□ -0.49
PDGFC-202ENST00000422544 MYL6BP14649 208 aa11.98□□□□□ -0.49
PDGFC-202ENST00000422544 RFC4P35249 363 aa11.98□□□□□ -0.49
PDGFC-202ENST00000422544 IL6STP40189 918 aaPredicted RBP11.98□□□□□ -0.49
PDGFC-202ENST00000422544 TWISTNBQ3B726 338 aaPredicted RBP11.98□□□□□ -0.49
PDGFC-202ENST00000422544 HDGFL1Q5TGJ6 251 aa11.98□□□□□ -0.49
PDGFC-202ENST00000422544 NLGN2Q8NFZ4 835 aa11.98□□□□□ -0.49
PDGFC-202ENST00000422544 TJP1Q07157 1748 aa11.97□□□□□ -0.49
PDGFC-202ENST00000422544 C5P01031 1676 aa11.97□□□□□ -0.49
PDGFC-202ENST00000422544 ZNF831Q5JPB2 1677 aa11.97□□□□□ -0.49
PDGFC-202ENST00000422544 ZBED9Q6R2W3 1325 aa11.97□□□□□ -0.49
PDGFC-202ENST00000422544 ANXA1P04083 346 aa11.97□□□□□ -0.49
PDGFC-202ENST00000422544 PDIA6Q15084 440 aa11.97□□□□□ -0.49
PDGFC-202ENST00000422544 PROSER3Q2NL68 480 aa11.97□□□□□ -0.49
PDGFC-202ENST00000422544 TRMT2AQ8IZ69 625 aaKnown RBP11.97□□□□□ -0.49
PDGFC-202ENST00000422544 TAF1LQ8IZX4 1826 aa11.96□□□□□ -0.49
PDGFC-202ENST00000422544 TCERG1O14776 1098 aaKnown RBP11.96□□□□□ -0.49
PDGFC-202ENST00000422544 VAMP4O75379 141 aa11.96□□□□□ -0.49
PDGFC-202ENST00000422544 YBX3P16989 372 aaKnown RBP eCLIP11.96□□□□□ -0.49
PDGFC-202ENST00000422544 NPM2Q86SE8 214 aaKnown RBP11.96□□□□□ -0.49
PDGFC-202ENST00000422544 YTHDC1Q96MU7 727 aaKnown RBP11.96□□□□□ -0.49
PDGFC-202ENST00000422544 CHPF2Q9P2E5 772 aa11.96□□□□□ -0.49
PDGFC-202ENST00000422544 SRP68Q9UHB9 627 aaKnown RBP11.96□□□□□ -0.49
PDGFC-202ENST00000422544 TBC1D2BQ9UPU7 963 aa11.96□□□□□ -0.49
PDGFC-202ENST00000422544 MYH14Q7Z406 1995 aaKnown RBP11.96□□□□□ -0.5
PDGFC-202ENST00000422544 ERBB4Q15303 1308 aa11.95□□□□□ -0.5
PDGFC-202ENST00000422544 A0A087WZG4 1122 aa11.95□□□□□ -0.5
PDGFC-202ENST00000422544 CCDC30Q5VVM6 783 aa11.95□□□□□ -0.5
PDGFC-202ENST00000422544 MSL1Q68DK7 614 aa11.95□□□□□ -0.5
PDGFC-202ENST00000422544 DDX21Q9NR30 783 aaKnown RBP eCLIP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms