RNA–Protein interactions for RNA: ENST00000413731.1

UPF3AP1-201, Transcript of UPF3A pseudogene 1, humanhuman

BASIC

Gene UPF3AP1, Length 1,126 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AP1-201ENST00000413731 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.41□□□□□ -0.58
UPF3AP1-201ENST00000413731 SPG7Q9UQ90 795 aa11.41□□□□□ -0.58
UPF3AP1-201ENST00000413731 ATP6V1AP38606 617 aa11.4□□□□□ -0.58
UPF3AP1-201ENST00000413731 EYA1Q99502 592 aa11.4□□□□□ -0.58
UPF3AP1-201ENST00000413731 SBF1O95248 1867 aa11.4□□□□□ -0.59
UPF3AP1-201ENST00000413731 WASHC2AQ641Q2 1341 aa11.39□□□□□ -0.59
UPF3AP1-201ENST00000413731 PHKG2P15735 406 aa11.39□□□□□ -0.59
UPF3AP1-201ENST00000413731 ATG3Q9NT62 314 aa11.39□□□□□ -0.59
UPF3AP1-201ENST00000413731 ADAMTS7Q9UKP4 1686 aa11.39□□□□□ -0.59
UPF3AP1-201ENST00000413731 KDM6AO15550 1401 aaPredicted RBP11.38□□□□□ -0.59
UPF3AP1-201ENST00000413731 CDCA8Q53HL2 280 aa11.38□□□□□ -0.59
UPF3AP1-201ENST00000413731 SCN11AQ9UI33 1791 aa11.38□□□□□ -0.59
UPF3AP1-201ENST00000413731 TNRC6CQ9HCJ0 1690 aaKnown RBP11.37□□□□□ -0.59
UPF3AP1-201ENST00000413731 ZNF467Q7Z7K2 595 aaPredicted RBP11.37□□□□□ -0.59
UPF3AP1-201ENST00000413731 IFNL2Q8IZJ0 200 aa11.37□□□□□ -0.59
UPF3AP1-201ENST00000413731 SLC4A9Q96Q91 983 aa11.37□□□□□ -0.59
UPF3AP1-201ENST00000413731 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.37□□□□□ -0.59
UPF3AP1-201ENST00000413731 BCS1LQ9Y276 419 aa11.37□□□□□ -0.59
UPF3AP1-201ENST00000413731 EIF4A2Q14240 407 aaKnown RBP11.36□□□□□ -0.59
UPF3AP1-201ENST00000413731 REM2Q8IYK8 340 aaPredicted RBP11.36□□□□□ -0.59
UPF3AP1-201ENST00000413731 POLKQ9UBT6 870 aa11.36□□□□□ -0.59
UPF3AP1-201ENST00000413731 AFDNP55196 1824 aaKnown RBP11.36□□□□□ -0.59
UPF3AP1-201ENST00000413731 PLEKHG2Q9H7P9 1386 aa11.36□□□□□ -0.59
UPF3AP1-201ENST00000413731 DLEC1Q9Y238 1755 aa11.36□□□□□ -0.59
UPF3AP1-201ENST00000413731 CNTNAP4Q9C0A0 1308 aa11.35□□□□□ -0.59
UPF3AP1-201ENST00000413731 A0A0G2JLW4 131 aa11.35□□□□□ -0.59
UPF3AP1-201ENST00000413731 EIF4G2P78344 907 aaKnown RBP eCLIP11.35□□□□□ -0.59
UPF3AP1-201ENST00000413731 NMRK2Q9NPI5 230 aa11.35□□□□□ -0.59
UPF3AP1-201ENST00000413731 RTCBQ9Y3I0 505 aaKnown RBP11.35□□□□□ -0.59
UPF3AP1-201ENST00000413731 TIAM2Q8IVF5 1701 aa11.35□□□□□ -0.59
UPF3AP1-201ENST00000413731 CCDC88AQ3V6T2 1871 aa11.34□□□□□ -0.59
UPF3AP1-201ENST00000413731 GYS1P13807 737 aa11.34□□□□□ -0.59
UPF3AP1-201ENST00000413731 DPEP1P16444 411 aa11.34□□□□□ -0.59
UPF3AP1-201ENST00000413731 APLP1P51693 650 aa11.34□□□□□ -0.59
UPF3AP1-201ENST00000413731 TRAPPC3LQ5T215 181 aa11.34□□□□□ -0.59
UPF3AP1-201ENST00000413731 KCPQ6ZWJ8 1503 aa11.34□□□□□ -0.59
UPF3AP1-201ENST00000413731 TNNT2P45379 298 aaPredicted RBP11.33□□□□□ -0.6
UPF3AP1-201ENST00000413731 TGFB2P61812 414 aa11.33□□□□□ -0.6
UPF3AP1-201ENST00000413731 ARHGEF1Q92888 912 aaKnown RBP11.33□□□□□ -0.6
UPF3AP1-201ENST00000413731 TSPYL2Q9H2G4 693 aaPredicted RBP11.33□□□□□ -0.6
UPF3AP1-201ENST00000413731 CCDC87Q9NVE4 849 aa11.33□□□□□ -0.6
UPF3AP1-201ENST00000413731 TOMM70O94826 608 aa11.32□□□□□ -0.6
UPF3AP1-201ENST00000413731 FCHSD2O94868 740 aa11.32□□□□□ -0.6
UPF3AP1-201ENST00000413731 HSPA5P11021 654 aaKnown RBP11.32□□□□□ -0.6
UPF3AP1-201ENST00000413731 PDAP1Q13442 181 aaKnown RBP11.32□□□□□ -0.6
UPF3AP1-201ENST00000413731 ARHGAP27Q6ZUM4 889 aa11.32□□□□□ -0.6
UPF3AP1-201ENST00000413731 NLGN1Q8N2Q7 840 aa11.32□□□□□ -0.6
UPF3AP1-201ENST00000413731 NRXN2Q9P2S2 1712 aa11.32□□□□□ -0.6
UPF3AP1-201ENST00000413731 ERVV-2B6SEH9 535 aa11.31□□□□□ -0.6
UPF3AP1-201ENST00000413731 RPS6KA4O75676 772 aa11.31□□□□□ -0.6
UPF3AP1-201ENST00000413731 RFC4P35249 363 aa11.31□□□□□ -0.6
UPF3AP1-201ENST00000413731 RC3H1Q5TC82 1133 aaKnown RBP11.31□□□□□ -0.6
UPF3AP1-201ENST00000413731 C9orf131Q5VYM1 1079 aa11.31□□□□□ -0.6
UPF3AP1-201ENST00000413731 ZNF530Q6P9A1 599 aaPredicted RBP11.31□□□□□ -0.6
UPF3AP1-201ENST00000413731 DCAF5Q96JK2 942 aa11.31□□□□□ -0.6
UPF3AP1-201ENST00000413731 POLR3GLQ9BT43 218 aa11.31□□□□□ -0.6
UPF3AP1-201ENST00000413731 SRP68Q9UHB9 627 aaKnown RBP11.31□□□□□ -0.6
UPF3AP1-201ENST00000413731 KCNA3P22001 575 aa11.3□□□□□ -0.6
UPF3AP1-201ENST00000413731 HTRA3P83110 453 aa11.3□□□□□ -0.6
UPF3AP1-201ENST00000413731 DDR1Q08345 913 aa11.3□□□□□ -0.6
UPF3AP1-201ENST00000413731 AEBP1Q8IUX7 1158 aa11.3□□□□□ -0.6
UPF3AP1-201ENST00000413731 DNAJC5GQ8N7S2 189 aa11.3□□□□□ -0.6
UPF3AP1-201ENST00000413731 PARP3Q9Y6F1 533 aa11.3□□□□□ -0.6
UPF3AP1-201ENST00000413731 USP42Q9H9J4 1324 aaKnown RBP11.3□□□□□ -0.6
UPF3AP1-201ENST00000413731 UBR2Q8IWV8 1755 aa11.29□□□□□ -0.6
UPF3AP1-201ENST00000413731 HSP90AB1P08238 724 aaKnown RBP11.29□□□□□ -0.6
UPF3AP1-201ENST00000413731 CRKLP46109 303 aaKnown RBP11.29□□□□□ -0.6
UPF3AP1-201ENST00000413731 BRPF1P55201 1214 aaPredicted RBP11.29□□□□□ -0.6
UPF3AP1-201ENST00000413731 MRC1P22897 1456 aa11.29□□□□□ -0.6
UPF3AP1-201ENST00000413731 CACNA1SQ13698 1873 aa11.28□□□□□ -0.6
UPF3AP1-201ENST00000413731 ANKRD31Q8N7Z5 1873 aa11.28□□□□□ -0.6
UPF3AP1-201ENST00000413731 PTCD1O75127 700 aaKnown RBP11.28□□□□□ -0.6
UPF3AP1-201ENST00000413731 CABP4P57796 275 aa11.28□□□□□ -0.6
UPF3AP1-201ENST00000413731 PLEKHO1Q53GL0 409 aaPredicted RBP11.28□□□□□ -0.6
UPF3AP1-201ENST00000413731 RBM46Q8TBY0 533 aaKnown RBP11.28□□□□□ -0.6
UPF3AP1-201ENST00000413731 COL11A2P13942 1736 aaPredicted RBP11.28□□□□□ -0.6
UPF3AP1-201ENST00000413731 SCN7AQ01118 1682 aa11.27□□□□□ -0.6
UPF3AP1-201ENST00000413731 CHRNA5P30532 468 aa11.27□□□□□ -0.61
UPF3AP1-201ENST00000413731 NEUROD2Q15784 382 aa11.27□□□□□ -0.61
UPF3AP1-201ENST00000413731 HOMEZQ8IX15 550 aa11.27□□□□□ -0.61
UPF3AP1-201ENST00000413731 RNF181Q9P0P0 153 aa11.27□□□□□ -0.61
UPF3AP1-201ENST00000413731 PCDHB8Q9UN66 801 aa11.27□□□□□ -0.61
UPF3AP1-201ENST00000413731 PCDHB13Q9Y5F0 798 aa11.27□□□□□ -0.61
UPF3AP1-201ENST00000413731 DICER1Q9UPY3 1922 aaKnown RBP11.27□□□□□ -0.61
UPF3AP1-201ENST00000413731 POLRMTO00411 1230 aaKnown RBP11.26□□□□□ -0.61
UPF3AP1-201ENST00000413731 RASSF7Q02833 373 aa11.26□□□□□ -0.61
UPF3AP1-201ENST00000413731 DALRD3Q5D0E6 543 aaKnown RBP11.26□□□□□ -0.61
UPF3AP1-201ENST00000413731 C1orf141Q5JVX7 400 aa11.26□□□□□ -0.61
UPF3AP1-201ENST00000413731 C16orf71Q8IYS4 520 aaPredicted RBP11.26□□□□□ -0.61
UPF3AP1-201ENST00000413731 PIM2Q9P1W9 311 aa11.26□□□□□ -0.61
UPF3AP1-201ENST00000413731 MTHFSP49914 203 aa11.25□□□□□ -0.61
UPF3AP1-201ENST00000413731 AMOTQ4VCS5 1084 aa11.25□□□□□ -0.61
UPF3AP1-201ENST00000413731 ZC3H15Q8WU90 426 aaKnown RBP11.25□□□□□ -0.61
UPF3AP1-201ENST00000413731 KLRG1Q96E93 195 aa11.25□□□□□ -0.61
UPF3AP1-201ENST00000413731 KDM2BQ8NHM5 1336 aa11.25□□□□□ -0.61
UPF3AP1-201ENST00000413731 FER1L6Q2WGJ9 1857 aa11.24□□□□□ -0.61
UPF3AP1-201ENST00000413731 INTS5Q6P9B9 1019 aaKnown RBP11.24□□□□□ -0.61
UPF3AP1-201ENST00000413731 DNAJC10Q8IXB1 793 aa11.24□□□□□ -0.61
UPF3AP1-201ENST00000413731 NFATC2IPQ8NCF5 419 aa11.24□□□□□ -0.61
UPF3AP1-201ENST00000413731 MFRPQ9BY79 579 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms