RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PRR16Q569H4 304 aa15.35■□□□□ 0.05
CCDC88A-204ENST00000413716 CCDC63Q8NA47 563 aa15.35■□□□□ 0.05
CCDC88A-204ENST00000413716 GNAI2P04899 355 aa15.35■□□□□ 0.05
CCDC88A-204ENST00000413716 CARMIL2Q6F5E8 1435 aa15.35■□□□□ 0.05
CCDC88A-204ENST00000413716 CTNNA3Q9UI47 895 aa15.35■□□□□ 0.05
CCDC88A-204ENST00000413716 ZNF287Q9HBT7 754 aa15.35■□□□□ 0.05
CCDC88A-204ENST00000413716 SRCIN1Q9C0H9 1055 aa15.35■□□□□ 0.05
CCDC88A-204ENST00000413716 USH1CQ9Y6N9 552 aa15.35■□□□□ 0.05
CCDC88A-204ENST00000413716 A0A1B0GUA9 196 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 PDRG1Q9NUG6 133 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 OPA1O60313 960 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 CCDC14Q49A88 953 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 CIZ1Q9ULV3 898 aaPredicted RBP15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 GCC1Q96CN9 775 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 NOP2P46087 812 aaKnown RBP15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 MICALL1Q8N3F8 863 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 CCDC172P0C7W6 258 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 ALDH3A1P30838 453 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 SNW1Q13573 536 aaKnown RBP15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 CFAP157Q5JU67 520 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 CTAGE5O15320 804 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 PDE1CQ14123 709 aaPredicted RBP15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 LACTBP83111 547 aaPredicted RBP15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 TMEM266Q2M3C6 531 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 BLOC1S2Q6QNY1 142 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 CCDC144CPQ8IYA2 1237 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 TTC16Q8NEE8 873 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 ARFGAP3Q9NP61 516 aa15.34■□□□□ 0.05
CCDC88A-204ENST00000413716 SH2D4BQ5SQS7 431 aa15.33■□□□□ 0.05
CCDC88A-204ENST00000413716 RAPGEF4Q8WZA2 1011 aa15.33■□□□□ 0.05
CCDC88A-204ENST00000413716 NUF2Q9BZD4 464 aa15.33■□□□□ 0.05
CCDC88A-204ENST00000413716 PLEKHH1Q9ULM0 1364 aa15.33■□□□□ 0.04
CCDC88A-204ENST00000413716 ERCC3P19447 782 aa15.33■□□□□ 0.04
CCDC88A-204ENST00000413716 USP5P45974 858 aa15.33■□□□□ 0.04
CCDC88A-204ENST00000413716 CACNA2D3Q8IZS8 1091 aa15.33■□□□□ 0.04
CCDC88A-204ENST00000413716 GBP1P32455 592 aa15.33■□□□□ 0.04
CCDC88A-204ENST00000413716 ATP2A1O14983 1001 aa15.33■□□□□ 0.04
CCDC88A-204ENST00000413716 PRPF31Q8WWY3 499 aaKnown RBP15.33■□□□□ 0.04
CCDC88A-204ENST00000413716 SYNCQ9H7C4 482 aa15.33■□□□□ 0.04
CCDC88A-204ENST00000413716 CCDC77Q9BR77 488 aa15.32■□□□□ 0.04
CCDC88A-204ENST00000413716 SELENOOQ9BVL4 669 aa15.32■□□□□ 0.04
CCDC88A-204ENST00000413716 SETDB1Q15047 1291 aa15.32■□□□□ 0.04
CCDC88A-204ENST00000413716 TTC21AQ8NDW8 1320 aa15.32■□□□□ 0.04
CCDC88A-204ENST00000413716 TBC1D5Q92609 795 aa15.32■□□□□ 0.04
CCDC88A-204ENST00000413716 CCDC170Q8IYT3 715 aa15.32■□□□□ 0.04
CCDC88A-204ENST00000413716 TRIM7Q9C029 511 aa15.32■□□□□ 0.04
CCDC88A-204ENST00000413716 KIAA1524Q8TCG1 905 aa15.31■□□□□ 0.04
CCDC88A-204ENST00000413716 TMX1Q9H3N1 280 aa15.31■□□□□ 0.04
CCDC88A-204ENST00000413716 LIG1P18858 919 aa15.31■□□□□ 0.04
CCDC88A-204ENST00000413716 ZBTB17Q13105 803 aa15.31■□□□□ 0.04
CCDC88A-204ENST00000413716 CCDC129Q6ZRS4 1044 aa15.31■□□□□ 0.04
CCDC88A-204ENST00000413716 EBAG9O00559 213 aa15.31■□□□□ 0.04
CCDC88A-204ENST00000413716 CASTP20810 708 aaKnown RBP15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 ATRIPQ8WXE1 791 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 ZMAT2Q96NC0 199 aaKnown RBP15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 TSPYL2Q9H2G4 693 aaPredicted RBP15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 VCXQ9H320 206 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 EHMT1Q9H9B1 1298 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 SAMD15Q9P1V8 674 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 GOLIM4O00461 696 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 MGEA5O60502 916 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 MCM5P33992 734 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 SF3B2Q13435 895 aaKnown RBP15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 ERCC6LQ2NKX8 1250 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 LMNTD2Q8IXW0 634 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 C10orf67Q8IYJ2 551 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 PPFIBP2Q8ND30 876 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 VPS8Q8N3P4 1428 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 PRPHP41219 470 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 HMGB1P09429 215 aaKnown RBP15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 SEPT8Q92599 483 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 CCDC114Q96M63 670 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 STX1AQ16623 288 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 IFT74Q96LB3 600 aa15.3■□□□□ 0.04
CCDC88A-204ENST00000413716 CTAGE6Q86UF2 777 aa15.29■□□□□ 0.04
CCDC88A-204ENST00000413716 RSPH3Q86UC2 560 aa15.29■□□□□ 0.04
CCDC88A-204ENST00000413716 DDX27Q96GQ7 796 aaKnown RBP15.29■□□□□ 0.04
CCDC88A-204ENST00000413716 TRMT1Q9NXH9 659 aaKnown RBP15.29■□□□□ 0.04
CCDC88A-204ENST00000413716 PUF60Q9UHX1 559 aaKnown RBP15.29■□□□□ 0.04
CCDC88A-204ENST00000413716 ATP2A2P16615 1042 aaKnown RBP15.29■□□□□ 0.04
CCDC88A-204ENST00000413716 STXBP4Q6ZWJ1 553 aa15.29■□□□□ 0.04
CCDC88A-204ENST00000413716 CNGA1P29973 690 aa15.29■□□□□ 0.04
CCDC88A-204ENST00000413716 MVPQ14764 893 aaKnown RBP15.29■□□□□ 0.04
CCDC88A-204ENST00000413716 JAKMIP2Q96AA8 810 aa15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 PRIMPOLQ96LW4 560 aa15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 SCAND2PQ9GZW5 306 aaPredicted RBP15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 ST20-MTHFSA0A0A6YYL1 179 aa15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 PFDN4Q9NQP4 134 aa15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 CUL5Q93034 780 aa15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 MAP7Q14244 749 aa15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 ZNF354CQ86Y25 554 aa15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 MPHOSPH8Q99549 860 aa15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 FKBP4Q02790 459 aaKnown RBP eCLIP15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 CEP85LQ5SZL2 805 aa15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 RBM28Q9NW13 759 aaKnown RBP15.28■□□□□ 0.04
CCDC88A-204ENST00000413716 MTIF2P46199 727 aaKnown RBP15.27■□□□□ 0.04
CCDC88A-204ENST00000413716 TXNDC16Q9P2K2 825 aa15.27■□□□□ 0.04
CCDC88A-204ENST00000413716 CEP128Q6ZU80 1094 aa15.27■□□□□ 0.04
CCDC88A-204ENST00000413716 CCDC12Q8WUD4 166 aaPredicted RBP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms