RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 CCDC146Q8IYE0 955 aa19.58■□□□□ 0.72
LIMS4-201ENST00000413601 NLGN1Q8N2Q7 840 aa19.58■□□□□ 0.72
LIMS4-201ENST00000413601 THUMPD2Q9BTF0 503 aaKnown RBP19.58■□□□□ 0.72
LIMS4-201ENST00000413601 SRP68Q9UHB9 627 aaKnown RBP19.58■□□□□ 0.72
LIMS4-201ENST00000413601 MMP10P09238 476 aa19.57■□□□□ 0.72
LIMS4-201ENST00000413601 CANXP27824 592 aaKnown RBP19.57■□□□□ 0.72
LIMS4-201ENST00000413601 TEX13AQ9BXU3 409 aaPredicted RBP19.57■□□□□ 0.72
LIMS4-201ENST00000413601 MIS18AQ9NYP9 233 aa19.57■□□□□ 0.72
LIMS4-201ENST00000413601 ADAMTS8Q9UP79 889 aa19.57■□□□□ 0.72
LIMS4-201ENST00000413601 USP42Q9H9J4 1324 aaKnown RBP19.56■□□□□ 0.72
LIMS4-201ENST00000413601 KIF13BQ9NQT8 1826 aa19.56■□□□□ 0.72
LIMS4-201ENST00000413601 RIPK4P57078 832 aa19.56■□□□□ 0.72
LIMS4-201ENST00000413601 COL15A1P39059 1388 aa19.56■□□□□ 0.72
LIMS4-201ENST00000413601 CD2APQ9Y5K6 639 aa19.55■□□□□ 0.72
LIMS4-201ENST00000413601 CHD4Q14839 1912 aa19.55■□□□□ 0.72
LIMS4-201ENST00000413601 PRAMEF22A3QJZ6 481 aa19.54■□□□□ 0.72
LIMS4-201ENST00000413601 ZPR1O75312 459 aa19.54■□□□□ 0.72
LIMS4-201ENST00000413601 TMPOP42166 694 aaKnown RBP19.54■□□□□ 0.72
LIMS4-201ENST00000413601 FKBP8Q14318 412 aa19.54■□□□□ 0.72
LIMS4-201ENST00000413601 RRP7AQ9Y3A4 280 aaKnown RBP19.54■□□□□ 0.72
LIMS4-201ENST00000413601 LAMB4A4D0S4 1761 aa19.54■□□□□ 0.72
LIMS4-201ENST00000413601 N4BP2Q86UW6 1770 aaPredicted RBP19.53■□□□□ 0.72
LIMS4-201ENST00000413601 A1BGP04217 495 aa19.53■□□□□ 0.72
LIMS4-201ENST00000413601 NEUROD2Q15784 382 aa19.53■□□□□ 0.72
LIMS4-201ENST00000413601 USPL1Q5W0Q7 1092 aa19.53■□□□□ 0.72
LIMS4-201ENST00000413601 RUNDC1Q96C34 613 aa19.53■□□□□ 0.72
LIMS4-201ENST00000413601 USP16Q9Y5T5 823 aa19.53■□□□□ 0.72
LIMS4-201ENST00000413601 SNRPA1P09661 255 aaKnown RBP19.52■□□□□ 0.72
LIMS4-201ENST00000413601 GPR162Q16538 588 aa19.52■□□□□ 0.72
LIMS4-201ENST00000413601 PELP1Q8IZL8 1130 aaKnown RBP19.52■□□□□ 0.72
LIMS4-201ENST00000413601 AFDNP55196 1824 aaKnown RBP19.52■□□□□ 0.72
LIMS4-201ENST00000413601 EIF5P55010 431 aaKnown RBP19.51■□□□□ 0.71
LIMS4-201ENST00000413601 CCDC184Q52MB2 194 aa19.51■□□□□ 0.71
LIMS4-201ENST00000413601 PNISRQ8TF01 805 aaKnown RBP19.51■□□□□ 0.71
LIMS4-201ENST00000413601 NARFQ9UHQ1 456 aa19.51■□□□□ 0.71
LIMS4-201ENST00000413601 ZNF330Q9Y3S2 320 aaPredicted RBP19.51■□□□□ 0.71
LIMS4-201ENST00000413601 PARP3Q9Y6F1 533 aa19.51■□□□□ 0.71
LIMS4-201ENST00000413601 KIAA1551Q9HCM1 1747 aa19.51■□□□□ 0.71
LIMS4-201ENST00000413601 SCN7AQ01118 1682 aa19.49■□□□□ 0.71
LIMS4-201ENST00000413601 PIP4K2AP48426 406 aaPredicted RBP19.49■□□□□ 0.71
LIMS4-201ENST00000413601 BCORQ6W2J9 1755 aa19.48■□□□□ 0.71
LIMS4-201ENST00000413601 A0A087WZG4 1122 aa19.48■□□□□ 0.71
LIMS4-201ENST00000413601 IL6STP40189 918 aaPredicted RBP19.48■□□□□ 0.71
LIMS4-201ENST00000413601 DDR1Q08345 913 aa19.48■□□□□ 0.71
LIMS4-201ENST00000413601 LMOD3Q0VAK6 560 aa19.48■□□□□ 0.71
LIMS4-201ENST00000413601 ANP32CO43423 234 aa19.47■□□□□ 0.71
LIMS4-201ENST00000413601 TM4SF1P30408 202 aa19.47■□□□□ 0.71
LIMS4-201ENST00000413601 EIF4A1P60842 406 aaKnown RBP19.47■□□□□ 0.71
LIMS4-201ENST00000413601 BCL2L12Q9HB09 334 aa19.47■□□□□ 0.71
LIMS4-201ENST00000413601 TBC1D2BQ9UPU7 963 aa19.47■□□□□ 0.71
LIMS4-201ENST00000413601 C10orf71Q711Q0 1435 aa19.46■□□□□ 0.71
LIMS4-201ENST00000413601 YBX3P16989 372 aaKnown RBP eCLIP19.46■□□□□ 0.71
LIMS4-201ENST00000413601 TRIM35Q9UPQ4 493 aa19.46■□□□□ 0.71
LIMS4-201ENST00000413601 BRCA1P38398 1863 aaKnown RBP19.45■□□□□ 0.7
LIMS4-201ENST00000413601 NRXN2Q9P2S2 1712 aa19.45■□□□□ 0.7
LIMS4-201ENST00000413601 POLRMTO00411 1230 aaKnown RBP19.45■□□□□ 0.7
LIMS4-201ENST00000413601 YY1P25490 414 aa19.45■□□□□ 0.7
LIMS4-201ENST00000413601 NFIXQ14938 502 aa19.45■□□□□ 0.7
LIMS4-201ENST00000413601 NPM2Q86SE8 214 aaKnown RBP19.45■□□□□ 0.7
LIMS4-201ENST00000413601 TSPYL4Q9UJ04 414 aa19.45■□□□□ 0.7
LIMS4-201ENST00000413601 WWC3Q9ULE0 1092 aa19.45■□□□□ 0.7
LIMS4-201ENST00000413601 GIGYF1O75420 1035 aaPredicted RBP19.44■□□□□ 0.7
LIMS4-201ENST00000413601 PXDNLA1KZ92 1463 aa19.43■□□□□ 0.7
LIMS4-201ENST00000413601 NBPF26B4DH59 902 aa19.43■□□□□ 0.7
LIMS4-201ENST00000413601 APAF1O14727 1248 aa19.43■□□□□ 0.7
LIMS4-201ENST00000413601 NBPF10Q6P3W6 841 aaKnown RBP19.43■□□□□ 0.7
LIMS4-201ENST00000413601 NBPF15Q8N660 670 aa19.43■□□□□ 0.7
LIMS4-201ENST00000413601 BICDL1Q6ZP65 573 aa19.42■□□□□ 0.7
LIMS4-201ENST00000413601 DZIP3Q86Y13 1208 aaKnown RBP19.42■□□□□ 0.7
LIMS4-201ENST00000413601 A0A0G2JLW4 131 aa19.41■□□□□ 0.7
LIMS4-201ENST00000413601 CAMTA2O94983 1202 aa19.41■□□□□ 0.7
LIMS4-201ENST00000413601 TGFB2P61812 414 aa19.41■□□□□ 0.7
LIMS4-201ENST00000413601 MRS2Q9HD23 443 aa19.41■□□□□ 0.7
LIMS4-201ENST00000413601 BABAM1Q9NWV8 329 aa19.41■□□□□ 0.7
LIMS4-201ENST00000413601 LAS1LQ9Y4W2 734 aaKnown RBP19.41■□□□□ 0.7
LIMS4-201ENST00000413601 NUP98P52948 1817 aa19.4■□□□□ 0.7
LIMS4-201ENST00000413601 TBC1D9BQ66K14 1250 aa19.4■□□□□ 0.7
LIMS4-201ENST00000413601 GRIN3BO60391 1043 aa19.39■□□□□ 0.69
LIMS4-201ENST00000413601 SERPINB2P05120 415 aa19.39■□□□□ 0.69
LIMS4-201ENST00000413601 DPEP1P16444 411 aa19.39■□□□□ 0.69
LIMS4-201ENST00000413601 CHL1O00533 1208 aa19.38■□□□□ 0.69
LIMS4-201ENST00000413601 ANKRD31Q8N7Z5 1873 aa19.38■□□□□ 0.69
LIMS4-201ENST00000413601 ARFGEF1Q9Y6D6 1849 aa19.37■□□□□ 0.69
LIMS4-201ENST00000413601 DLEC1Q9Y238 1755 aa19.37■□□□□ 0.69
LIMS4-201ENST00000413601 UTRNP46939 3433 aa19.37■□□□□ 0.69
LIMS4-201ENST00000413601 GOLGB1Q14789 3259 aaKnown RBP19.37■□□□□ 0.69
LIMS4-201ENST00000413601 NGEFQ8N5V2 710 aa19.37■□□□□ 0.69
LIMS4-201ENST00000413601 KCNA3P22001 575 aa19.36■□□□□ 0.69
LIMS4-201ENST00000413601 SENP3-EIF4A1A0A087X0R7 540 aa19.35■□□□□ 0.69
LIMS4-201ENST00000413601 MYL6BP14649 208 aa19.35■□□□□ 0.69
LIMS4-201ENST00000413601 EIF2S2P20042 333 aaKnown RBP19.35■□□□□ 0.69
LIMS4-201ENST00000413601 CHRNA5P30532 468 aa19.35■□□□□ 0.69
LIMS4-201ENST00000413601 KRT24Q2M2I5 525 aa19.35■□□□□ 0.69
LIMS4-201ENST00000413601 SETDB2Q96T68 719 aa19.35■□□□□ 0.69
LIMS4-201ENST00000413601 CARMIL3Q8ND23 1372 aa19.34■□□□□ 0.69
LIMS4-201ENST00000413601 CLEC4GQ6UXB4 293 aa19.34■□□□□ 0.69
LIMS4-201ENST00000413601 CFAP44Q96MT7 982 aa19.34■□□□□ 0.69
LIMS4-201ENST00000413601 BCS1LQ9Y276 419 aa19.34■□□□□ 0.69
LIMS4-201ENST00000413601 ZNF652Q9Y2D9 606 aa19.33■□□□□ 0.68
LIMS4-201ENST00000413601 HLFQ16534 295 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms