RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 RUNDC1Q96C34 613 aa31.22■■■□□ 2.59
SHMT1-204ENST00000395682 ZBTB1Q9Y2K1 713 aa31.22■■■□□ 2.59
SHMT1-204ENST00000395682 GYS1P13807 737 aa31.21■■■□□ 2.59
SHMT1-204ENST00000395682 SOS1Q07889 1333 aaPredicted RBP31.21■■■□□ 2.59
SHMT1-204ENST00000395682 CANXP27824 592 aaKnown RBP31.2■■■□□ 2.59
SHMT1-204ENST00000395682 SRP68Q9UHB9 627 aaKnown RBP31.19■■■□□ 2.58
SHMT1-204ENST00000395682 RRP7AQ9Y3A4 280 aaKnown RBP31.19■■■□□ 2.58
SHMT1-204ENST00000395682 ANP32CO43423 234 aa31.18■■■□□ 2.58
SHMT1-204ENST00000395682 MMP10P09238 476 aa31.18■■■□□ 2.58
SHMT1-204ENST00000395682 PNISRQ8TF01 805 aaKnown RBP31.18■■■□□ 2.58
SHMT1-204ENST00000395682 NEUROD2Q15784 382 aa31.17■■■□□ 2.58
SHMT1-204ENST00000395682 USP42Q9H9J4 1324 aaKnown RBP31.17■■■□□ 2.58
SHMT1-204ENST00000395682 ZPR1O75312 459 aa31.16■■■□□ 2.58
SHMT1-204ENST00000395682 SNRPA1P09661 255 aaKnown RBP31.16■■■□□ 2.58
SHMT1-204ENST00000395682 NLGN2Q8NFZ4 835 aa31.16■■■□□ 2.58
SHMT1-204ENST00000395682 CD2APQ9Y5K6 639 aa31.16■■■□□ 2.58
SHMT1-204ENST00000395682 LMOD3Q0VAK6 560 aa31.15■■■□□ 2.58
SHMT1-204ENST00000395682 CCDC184Q52MB2 194 aa31.15■■■□□ 2.58
SHMT1-204ENST00000395682 USP16Q9Y5T5 823 aa31.15■■■□□ 2.58
SHMT1-204ENST00000395682 PRAMEF22A3QJZ6 481 aa31.13■■■□□ 2.57
SHMT1-204ENST00000395682 A1BGP04217 495 aa31.13■■■□□ 2.57
SHMT1-204ENST00000395682 EIF5P55010 431 aaKnown RBP31.13■■■□□ 2.57
SHMT1-204ENST00000395682 COL15A1P39059 1388 aa31.13■■■□□ 2.57
SHMT1-204ENST00000395682 FKBP8Q14318 412 aa31.12■■■□□ 2.57
SHMT1-204ENST00000395682 USPL1Q5W0Q7 1092 aa31.12■■■□□ 2.57
SHMT1-204ENST00000395682 NARFQ9UHQ1 456 aa31.12■■■□□ 2.57
SHMT1-204ENST00000395682 C4AP0C0L4 1744 aa31.11■■■□□ 2.57
SHMT1-204ENST00000395682 A0A087WZG4 1122 aa31.09■■■□□ 2.57
SHMT1-204ENST00000395682 ZNF330Q9Y3S2 320 aaPredicted RBP31.09■■■□□ 2.57
SHMT1-204ENST00000395682 PARP3Q9Y6F1 533 aa31.09■■■□□ 2.57
SHMT1-204ENST00000395682 IL6STP40189 918 aaPredicted RBP31.08■■■□□ 2.57
SHMT1-204ENST00000395682 TRIM35Q9UPQ4 493 aa31.08■■■□□ 2.57
SHMT1-204ENST00000395682 EIF4A1P60842 406 aaKnown RBP31.07■■■□□ 2.56
SHMT1-204ENST00000395682 GPR162Q16538 588 aa31.07■■■□□ 2.56
SHMT1-204ENST00000395682 TSPYL4Q9UJ04 414 aa31.07■■■□□ 2.56
SHMT1-204ENST00000395682 NPM2Q86SE8 214 aaKnown RBP31.06■■■□□ 2.56
SHMT1-204ENST00000395682 PELP1Q8IZL8 1130 aaKnown RBP31.05■■■□□ 2.56
SHMT1-204ENST00000395682 APAF1O14727 1248 aa31.04■■■□□ 2.56
SHMT1-204ENST00000395682 GIGYF1O75420 1035 aaPredicted RBP31.04■■■□□ 2.56
SHMT1-204ENST00000395682 TM4SF1P30408 202 aa31.04■■■□□ 2.56
SHMT1-204ENST00000395682 PIP4K2AP48426 406 aaPredicted RBP31.04■■■□□ 2.56
SHMT1-204ENST00000395682 BCL2L12Q9HB09 334 aa31.04■■■□□ 2.56
SHMT1-204ENST00000395682 BABAM1Q9NWV8 329 aa31.04■■■□□ 2.56
SHMT1-204ENST00000395682 TBC1D2BQ9UPU7 963 aa31.04■■■□□ 2.56
SHMT1-204ENST00000395682 MRS2Q9HD23 443 aa31.03■■■□□ 2.56
SHMT1-204ENST00000395682 DDR1Q08345 913 aa31.02■■■□□ 2.56
SHMT1-204ENST00000395682 KDM3BQ7LBC6 1761 aa31.01■■■□□ 2.55
SHMT1-204ENST00000395682 NBPF26B4DH59 902 aa31■■■□□ 2.55
SHMT1-204ENST00000395682 NFIXQ14938 502 aa31■■■□□ 2.55
SHMT1-204ENST00000395682 NBPF10Q6P3W6 841 aaKnown RBP31■■■□□ 2.55
SHMT1-204ENST00000395682 NBPF15Q8N660 670 aa31■■■□□ 2.55
SHMT1-204ENST00000395682 LAS1LQ9Y4W2 734 aaKnown RBP30.99■■■□□ 2.55
SHMT1-204ENST00000395682 POLRMTO00411 1230 aaKnown RBP30.98■■■□□ 2.55
SHMT1-204ENST00000395682 CHL1O00533 1208 aa30.97■■■□□ 2.55
SHMT1-204ENST00000395682 DZIP3Q86Y13 1208 aaKnown RBP30.96■■■□□ 2.55
SHMT1-204ENST00000395682 TGFB2P61812 414 aa30.95■■■□□ 2.55
SHMT1-204ENST00000395682 BICDL1Q6ZP65 573 aa30.95■■■□□ 2.55
SHMT1-204ENST00000395682 CAMTA2O94983 1202 aa30.94■■■□□ 2.54
SHMT1-204ENST00000395682 YBX3P16989 372 aaKnown RBP eCLIP30.94■■■□□ 2.54
SHMT1-204ENST00000395682 C10orf71Q711Q0 1435 aa30.94■■■□□ 2.54
SHMT1-204ENST00000395682 A0A0G2JLW4 131 aa30.92■■■□□ 2.54
SHMT1-204ENST00000395682 TBC1D9BQ66K14 1250 aa30.92■■■□□ 2.54
SHMT1-204ENST00000395682 WWC3Q9ULE0 1092 aa30.92■■■□□ 2.54
SHMT1-204ENST00000395682 SERPINB2P05120 415 aa30.91■■■□□ 2.54
SHMT1-204ENST00000395682 GRIN3BO60391 1043 aa30.9■■■□□ 2.54
SHMT1-204ENST00000395682 YY1P25490 414 aa30.9■■■□□ 2.54
SHMT1-204ENST00000395682 NGEFQ8N5V2 710 aa30.9■■■□□ 2.54
SHMT1-204ENST00000395682 CFAP44Q96MT7 982 aa30.9■■■□□ 2.54
SHMT1-204ENST00000395682 EIF2S2P20042 333 aaKnown RBP30.89■■■□□ 2.54
SHMT1-204ENST00000395682 UTRNP46939 3433 aa30.89■■■□□ 2.53
SHMT1-204ENST00000395682 GOLGB1Q14789 3259 aaKnown RBP30.88■■■□□ 2.53
SHMT1-204ENST00000395682 DPEP1P16444 411 aa30.88■■■□□ 2.53
SHMT1-204ENST00000395682 PXDNLA1KZ92 1463 aa30.88■■■□□ 2.53
SHMT1-204ENST00000395682 LAMB4A4D0S4 1761 aa30.87■■■□□ 2.53
SHMT1-204ENST00000395682 KIF13BQ9NQT8 1826 aa30.87■■■□□ 2.53
SHMT1-204ENST00000395682 SENP3-EIF4A1A0A087X0R7 540 aa30.87■■■□□ 2.53
SHMT1-204ENST00000395682 MYL6BP14649 208 aa30.87■■■□□ 2.53
SHMT1-204ENST00000395682 CALD1Q05682 793 aaKnown RBP30.87■■■□□ 2.53
SHMT1-204ENST00000395682 SETDB2Q96T68 719 aa30.87■■■□□ 2.53
SHMT1-204ENST00000395682 CLEC4GQ6UXB4 293 aa30.86■■■□□ 2.53
SHMT1-204ENST00000395682 KRT24Q2M2I5 525 aa30.85■■■□□ 2.53
SHMT1-204ENST00000395682 ZNF652Q9Y2D9 606 aa30.85■■■□□ 2.53
SHMT1-204ENST00000395682 ERBB4Q15303 1308 aa30.84■■■□□ 2.53
SHMT1-204ENST00000395682 ZNF853P0CG23 659 aa30.84■■■□□ 2.53
SHMT1-204ENST00000395682 SCN7AQ01118 1682 aa30.84■■■□□ 2.53
SHMT1-204ENST00000395682 MBIPQ9NS73 344 aa30.83■■■□□ 2.53
SHMT1-204ENST00000395682 IFT57Q9NWB7 429 aa30.83■■■□□ 2.53
SHMT1-204ENST00000395682 KCNA3P22001 575 aa30.82■■■□□ 2.52
SHMT1-204ENST00000395682 GNAI1P63096 354 aa30.82■■■□□ 2.52
SHMT1-204ENST00000395682 NECTIN2Q92692 538 aa30.82■■■□□ 2.52
SHMT1-204ENST00000395682 N4BP2Q86UW6 1770 aaPredicted RBP30.82■■■□□ 2.52
SHMT1-204ENST00000395682 CARMIL3Q8ND23 1372 aa30.81■■■□□ 2.52
SHMT1-204ENST00000395682 RGL2O15211 777 aa30.81■■■□□ 2.52
SHMT1-204ENST00000395682 AFDNP55196 1824 aaKnown RBP30.8■■■□□ 2.52
SHMT1-204ENST00000395682 CHRNA5P30532 468 aa30.8■■■□□ 2.52
SHMT1-204ENST00000395682 PDIA6Q15084 440 aa30.8■■■□□ 2.52
SHMT1-204ENST00000395682 HLFQ16534 295 aa30.8■■■□□ 2.52
SHMT1-204ENST00000395682 KIF6Q6ZMV9 814 aa30.8■■■□□ 2.52
SHMT1-204ENST00000395682 TTLL7Q6ZT98 887 aa30.8■■■□□ 2.52
SHMT1-204ENST00000395682 FAM9BQ8IZU0 186 aa30.8■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms