RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 SRP68Q9UHB9 627 aaKnown RBP16.08■□□□□ 0.16
VRK3-202ENST00000377011 ZBTB1Q9Y2K1 713 aa16.08■□□□□ 0.16
VRK3-202ENST00000377011 SSFA2P28290 1259 aa16.07■□□□□ 0.16
VRK3-202ENST00000377011 TMPOP42166 694 aaKnown RBP16.07■□□□□ 0.16
VRK3-202ENST00000377011 NEUROD2Q15784 382 aa16.07■□□□□ 0.16
VRK3-202ENST00000377011 RC3H1Q5TC82 1133 aaKnown RBP16.07■□□□□ 0.16
VRK3-202ENST00000377011 SLC16A10Q8TF71 515 aa16.07■□□□□ 0.16
VRK3-202ENST00000377011 RTF1Q92541 710 aaKnown RBP16.07■□□□□ 0.16
VRK3-202ENST00000377011 ARXQ96QS3 562 aa16.07■□□□□ 0.16
VRK3-202ENST00000377011 RPS6KA4O75676 772 aa16.06■□□□□ 0.16
VRK3-202ENST00000377011 PIP4K2AP48426 406 aaPredicted RBP16.06■□□□□ 0.16
VRK3-202ENST00000377011 MAPK8IP3Q9UPT6 1336 aa16.06■□□□□ 0.16
VRK3-202ENST00000377011 HEG1Q9ULI3 1381 aa16.06■□□□□ 0.16
VRK3-202ENST00000377011 RIPK4P57078 832 aa16.05■□□□□ 0.16
VRK3-202ENST00000377011 RTCBQ9Y3I0 505 aaKnown RBP16.05■□□□□ 0.16
VRK3-202ENST00000377011 KDM3BQ7LBC6 1761 aa16.05■□□□□ 0.16
VRK3-202ENST00000377011 HTATSF1O43719 755 aaKnown RBP16.05■□□□□ 0.16
VRK3-202ENST00000377011 WDR43Q15061 677 aaKnown RBP eCLIP16.05■□□□□ 0.16
VRK3-202ENST00000377011 TTC5Q8N0Z6 440 aa16.05■□□□□ 0.16
VRK3-202ENST00000377011 CCDC136Q96JN2 1154 aa16.05■□□□□ 0.16
VRK3-202ENST00000377011 SYT17Q9BSW7 474 aa16.05■□□□□ 0.16
VRK3-202ENST00000377011 TRIM35Q9UPQ4 493 aa16.05■□□□□ 0.16
VRK3-202ENST00000377011 USP16Q9Y5T5 823 aa16.05■□□□□ 0.16
VRK3-202ENST00000377011 TRAPPC3LQ5T215 181 aa16.04■□□□□ 0.16
VRK3-202ENST00000377011 NLGN2Q8NFZ4 835 aa16.04■□□□□ 0.16
VRK3-202ENST00000377011 CCDC87Q9NVE4 849 aa16.04■□□□□ 0.16
VRK3-202ENST00000377011 A1BGP04217 495 aa16.03■□□□□ 0.16
VRK3-202ENST00000377011 ERICH6Q7L0X2 663 aa16.03■□□□□ 0.16
VRK3-202ENST00000377011 KLHL34Q8N239 644 aa16.03■□□□□ 0.16
VRK3-202ENST00000377011 SOS1Q07889 1333 aaPredicted RBP16.03■□□□□ 0.16
VRK3-202ENST00000377011 GYS1P13807 737 aa16.02■□□□□ 0.16
VRK3-202ENST00000377011 CANXP27824 592 aaKnown RBP16.02■□□□□ 0.16
VRK3-202ENST00000377011 RRP1P56182 461 aaKnown RBP16.02■□□□□ 0.16
VRK3-202ENST00000377011 TAF7Q15545 349 aaPredicted RBP16.02■□□□□ 0.16
VRK3-202ENST00000377011 VSIG10Q8N0Z9 540 aa16.02■□□□□ 0.16
VRK3-202ENST00000377011 FLAD1Q8NFF5 587 aa16.02■□□□□ 0.16
VRK3-202ENST00000377011 RUNDC1Q96C34 613 aa16.02■□□□□ 0.16
VRK3-202ENST00000377011 PIAS4Q8N2W9 510 aaPredicted RBP16.02■□□□□ 0.15
VRK3-202ENST00000377011 FMNL2Q96PY5 1086 aa16.02■□□□□ 0.15
VRK3-202ENST00000377011 APAF1O14727 1248 aa16■□□□□ 0.15
VRK3-202ENST00000377011 NEFMP07197 916 aa16■□□□□ 0.15
VRK3-202ENST00000377011 POLD1P28340 1107 aa16■□□□□ 0.15
VRK3-202ENST00000377011 BCL2L12Q9HB09 334 aa16■□□□□ 0.15
VRK3-202ENST00000377011 RCAN3Q9UKA8 241 aa16■□□□□ 0.15
VRK3-202ENST00000377011 USPL1Q5W0Q7 1092 aa15.99■□□□□ 0.15
VRK3-202ENST00000377011 USP42Q9H9J4 1324 aaKnown RBP15.99■□□□□ 0.15
VRK3-202ENST00000377011 MMP10P09238 476 aa15.99■□□□□ 0.15
VRK3-202ENST00000377011 RFC4P35249 363 aa15.99■□□□□ 0.15
VRK3-202ENST00000377011 KRT24Q2M2I5 525 aa15.99■□□□□ 0.15
VRK3-202ENST00000377011 PNNQ9H307 717 aaKnown RBP15.99■□□□□ 0.15
VRK3-202ENST00000377011 COL15A1P39059 1388 aa15.98■□□□□ 0.15
VRK3-202ENST00000377011 NBPF26B4DH59 902 aa15.98■□□□□ 0.15
VRK3-202ENST00000377011 EIF5P55010 431 aaKnown RBP15.98■□□□□ 0.15
VRK3-202ENST00000377011 EIF4A1P60842 406 aaKnown RBP15.98■□□□□ 0.15
VRK3-202ENST00000377011 NBPF10Q6P3W6 841 aaKnown RBP15.98■□□□□ 0.15
VRK3-202ENST00000377011 NBPF15Q8N660 670 aa15.98■□□□□ 0.15
VRK3-202ENST00000377011 ADRA2BP18089 450 aa15.97■□□□□ 0.15
VRK3-202ENST00000377011 DDR1Q08345 913 aa15.97■□□□□ 0.15
VRK3-202ENST00000377011 WWC3Q9ULE0 1092 aa15.97■□□□□ 0.15
VRK3-202ENST00000377011 ZNF330Q9Y3S2 320 aaPredicted RBP15.97■□□□□ 0.15
VRK3-202ENST00000377011 GIGYF1O75420 1035 aaPredicted RBP15.96■□□□□ 0.15
VRK3-202ENST00000377011 STARD3NLO95772 234 aa15.96■□□□□ 0.15
VRK3-202ENST00000377011 TBC1D2BQ9UPU7 963 aa15.96■□□□□ 0.15
VRK3-202ENST00000377011 SNRPA1P09661 255 aaKnown RBP15.95■□□□□ 0.14
VRK3-202ENST00000377011 TSPYL4Q9UJ04 414 aa15.95■□□□□ 0.14
VRK3-202ENST00000377011 KIAA1551Q9HCM1 1747 aa15.95■□□□□ 0.14
VRK3-202ENST00000377011 LAMB4A4D0S4 1761 aa15.94■□□□□ 0.14
VRK3-202ENST00000377011 HMGB2P26583 209 aaKnown RBP15.94■□□□□ 0.14
VRK3-202ENST00000377011 NARFQ9UHQ1 456 aa15.94■□□□□ 0.14
VRK3-202ENST00000377011 LAS1LQ9Y4W2 734 aaKnown RBP15.94■□□□□ 0.14
VRK3-202ENST00000377011 TM4SF1P30408 202 aa15.93■□□□□ 0.14
VRK3-202ENST00000377011 AFDNP55196 1824 aaKnown RBP15.93■□□□□ 0.14
VRK3-202ENST00000377011 N4BP2Q86UW6 1770 aaPredicted RBP15.92■□□□□ 0.14
VRK3-202ENST00000377011 SCN7AQ01118 1682 aa15.92■□□□□ 0.14
VRK3-202ENST00000377011 CHL1O00533 1208 aa15.92■□□□□ 0.14
VRK3-202ENST00000377011 NFIXQ14938 502 aa15.92■□□□□ 0.14
VRK3-202ENST00000377011 NLGN1Q8N2Q7 840 aa15.92■□□□□ 0.14
VRK3-202ENST00000377011 TEX13AQ9BXU3 409 aaPredicted RBP15.92■□□□□ 0.14
VRK3-202ENST00000377011 POLRMTO00411 1230 aaKnown RBP15.91■□□□□ 0.14
VRK3-202ENST00000377011 ANXA1P04083 346 aa15.91■□□□□ 0.14
VRK3-202ENST00000377011 YBX3P16989 372 aaKnown RBP eCLIP15.91■□□□□ 0.144e-7■■□□□ 11.9
VRK3-202ENST00000377011 IL6STP40189 918 aaPredicted RBP15.91■□□□□ 0.14
VRK3-202ENST00000377011 KIF13BQ9NQT8 1826 aa15.91■□□□□ 0.14
VRK3-202ENST00000377011 BCORQ6W2J9 1755 aa15.91■□□□□ 0.14
VRK3-202ENST00000377011 TCERG1O14776 1098 aaKnown RBP15.91■□□□□ 0.14
VRK3-202ENST00000377011 ZPR1O75312 459 aa15.91■□□□□ 0.14
VRK3-202ENST00000377011 CAMTA2O94983 1202 aa15.91■□□□□ 0.14
VRK3-202ENST00000377011 PROSER3Q2NL68 480 aa15.91■□□□□ 0.14
VRK3-202ENST00000377011 TBC1D9BQ66K14 1250 aa15.91■□□□□ 0.14
VRK3-202ENST00000377011 BICDL1Q6ZP65 573 aa15.91■□□□□ 0.14
VRK3-202ENST00000377011 NECTIN2Q92692 538 aa15.91■□□□□ 0.14
VRK3-202ENST00000377011 SALL2Q9Y467 1007 aaPredicted RBP15.91■□□□□ 0.14
VRK3-202ENST00000377011 CCDC24Q8N4L8 307 aa15.9■□□□□ 0.14
VRK3-202ENST00000377011 NGEFQ8N5V2 710 aa15.9■□□□□ 0.14
VRK3-202ENST00000377011 CARMIL3Q8ND23 1372 aa15.89■□□□□ 0.13
VRK3-202ENST00000377011 C10orf71Q711Q0 1435 aa15.89■□□□□ 0.13
VRK3-202ENST00000377011 ZNF853P0CG23 659 aa15.89■□□□□ 0.13
VRK3-202ENST00000377011 LMOD3Q0VAK6 560 aa15.89■□□□□ 0.13
VRK3-202ENST00000377011 PDIA6Q15084 440 aa15.89■□□□□ 0.13
VRK3-202ENST00000377011 MBIPQ9NS73 344 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms