RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 KNDC1Q76NI1 1749 aa6.58□□□□□ -1.36
ATG4A-204ENST00000372246 NUTM2FA1L443 756 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 TRIM6-TRIM34B2RNG4 842 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 NUDT7P0C024 238 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 LRMPQ12912 555 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 ALDH1L2Q3SY69 923 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 VARS2Q5ST30 1063 aaKnown RBP6.57□□□□□ -1.36
ATG4A-204ENST00000372246 NME9Q86XW9 330 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 IL1RAPL2Q9NP60 686 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.57□□□□□ -1.36
ATG4A-204ENST00000372246 V9GYY5 206 aaPredicted RBP6.57□□□□□ -1.36
ATG4A-204ENST00000372246 ABCC4O15439 1325 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 MSH6P52701 1360 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 ANKRD36BQ8N2N9 1353 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 TULP4Q9NRJ4 1543 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 A0A087WWV3 80 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 BRD1O95696 1058 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 CAMK4Q16566 473 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 PPP1R15BQ5SWA1 713 aa6.57□□□□□ -1.36
ATG4A-204ENST00000372246 PAXIP1Q6ZW49 1069 aaPredicted RBP6.57□□□□□ -1.36
ATG4A-204ENST00000372246 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.57□□□□□ -1.36
ATG4A-204ENST00000372246 ADGRB2O60241 1585 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 COL3A1P02461 1466 aaPredicted RBP6.56□□□□□ -1.36
ATG4A-204ENST00000372246 PLCH2O75038 1416 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 LARGE1O95461 756 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 CT47B1P0C2W7 299 aaPredicted RBP6.56□□□□□ -1.36
ATG4A-204ENST00000372246 MFSD10Q14728 455 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 SRCIN1Q9C0H9 1055 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 NRBP1Q9UHY1 535 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 FOXO3O43524 673 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 PTMSP20962 102 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 CSPP1Q1MSJ5 1256 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 HS1BP3Q53T59 392 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 SYTL4Q96C24 671 aaPredicted RBP6.56□□□□□ -1.36
ATG4A-204ENST00000372246 QRICH2Q9H0J4 1663 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 LRRC7Q96NW7 1537 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 MED14O60244 1454 aa6.56□□□□□ -1.36
ATG4A-204ENST00000372246 PNMA6EA0A0J9YXQ4 647 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 ERC2O15083 957 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 NPHP1O15259 732 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 NFE2L2Q16236 605 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 NUTM1Q86Y26 1132 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 TRERF1Q96PN7 1200 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 ST7Q9NRC1 585 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 BCCIPQ9P287 314 aaKnown RBP eCLIP6.55□□□□□ -1.36
ATG4A-204ENST00000372246 PTGS1P23219 599 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 TERF1P54274 439 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 PDE1AP54750 535 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 C14orf37Q86TY3 774 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 FERMT3Q86UX7 667 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 ANKRD44Q8N8A2 993 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 OXER1Q8TDS5 423 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 PIBF1Q8WXW3 757 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 C16orf45Q96MC5 204 aaPredicted RBP6.55□□□□□ -1.36
ATG4A-204ENST00000372246 MAP7D2Q96T17 732 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 CDK19Q9BWU1 502 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 PLSCR2Q9NRY7 297 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 CGNQ9P2M7 1197 aaKnown RBP6.55□□□□□ -1.36
ATG4A-204ENST00000372246 ATP10DQ9P241 1426 aa6.55□□□□□ -1.36
ATG4A-204ENST00000372246 PPFIA3O75145 1194 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 PDCL2Q8N4E4 241 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 TCEANC2Q96MN5 208 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 CWC22Q9HCG8 908 aaKnown RBP6.54□□□□□ -1.36
ATG4A-204ENST00000372246 NAP1L2Q9ULW6 460 aaPredicted RBP6.54□□□□□ -1.36
ATG4A-204ENST00000372246 KIF3AQ9Y496 699 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 IL16Q14005 1332 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 FCHSD2O94868 740 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 DNM1Q05193 864 aaKnown RBP6.54□□□□□ -1.36
ATG4A-204ENST00000372246 ARID5BQ14865 1188 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 LUZP1Q86V48 1076 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 CKAP2LQ8IYA6 745 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 IPO4Q8TEX9 1081 aaKnown RBP6.54□□□□□ -1.36
ATG4A-204ENST00000372246 DDX27Q96GQ7 796 aaKnown RBP6.54□□□□□ -1.36
ATG4A-204ENST00000372246 ESYT1Q9BSJ8 1104 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 LHX6Q9UPM6 363 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 SPG7Q9UQ90 795 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 RTL1A6NKG5 1358 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 ADGRB1O14514 1584 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 ABCC1P33527 1531 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 ZFYVE16Q7Z3T8 1539 aa6.54□□□□□ -1.36
ATG4A-204ENST00000372246 GNAI1P63096 354 aa6.53□□□□□ -1.36
ATG4A-204ENST00000372246 IDI1Q13907 227 aa6.53□□□□□ -1.36
ATG4A-204ENST00000372246 NECAB1Q8N987 351 aa6.53□□□□□ -1.36
ATG4A-204ENST00000372246 ZNF592Q92610 1267 aa6.53□□□□□ -1.36
ATG4A-204ENST00000372246 FBXW7Q969H0 707 aa6.53□□□□□ -1.36
ATG4A-204ENST00000372246 ZCCHC11Q5TAX3 1644 aaKnown RBP6.53□□□□□ -1.36
ATG4A-204ENST00000372246 REC8O95072 547 aa6.53□□□□□ -1.36
ATG4A-204ENST00000372246 ZNF853P0CG23 659 aa6.53□□□□□ -1.36
ATG4A-204ENST00000372246 HSP90B1P14625 803 aaKnown RBP6.53□□□□□ -1.36
ATG4A-204ENST00000372246 GTF2E1P29083 439 aaPredicted RBP6.53□□□□□ -1.36
ATG4A-204ENST00000372246 ZNF687Q8N1G0 1237 aa6.53□□□□□ -1.36
ATG4A-204ENST00000372246 PTCH1Q13635 1447 aa6.53□□□□□ -1.36
ATG4A-204ENST00000372246 RPAP1Q9BWH6 1393 aaPredicted RBP6.53□□□□□ -1.36
ATG4A-204ENST00000372246 ARHGEF40Q8TER5 1519 aa6.53□□□□□ -1.36
ATG4A-204ENST00000372246 CD163L1Q9NR16 1453 aa6.53□□□□□ -1.36
ATG4A-204ENST00000372246 ERICH4A6NGS2 130 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 CHMLP26374 656 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 IL13P35225 146 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 FKBP5Q13451 457 aaPredicted RBP6.52□□□□□ -1.37
ATG4A-204ENST00000372246 CASC1Q6TDU7 716 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms