RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 ZNF853P0CG23 659 aa17.88■□□□□ 0.45
LDB3-204ENST00000372066 EIF4A2Q14240 407 aaKnown RBP17.88■□□□□ 0.45
LDB3-204ENST00000372066 ATF7IPQ6VMQ6 1270 aa17.88■□□□□ 0.45
LDB3-204ENST00000372066 SSH1Q8WYL5 1049 aa17.88■□□□□ 0.45
LDB3-204ENST00000372066 PHF14O94880 888 aa17.87■□□□□ 0.45
LDB3-204ENST00000372066 RLBP1P12271 317 aa17.87■□□□□ 0.45
LDB3-204ENST00000372066 BCL2L13Q9BXK5 485 aa17.87■□□□□ 0.45
LDB3-204ENST00000372066 DDX19BQ9UMR2 479 aa17.87■□□□□ 0.45
LDB3-204ENST00000372066 CD2APQ9Y5K6 639 aa17.87■□□□□ 0.45
LDB3-204ENST00000372066 FAM161AQ3B820 660 aa17.87■□□□□ 0.45
LDB3-204ENST00000372066 SMIM5Q71RC9 77 aa17.87■□□□□ 0.45
LDB3-204ENST00000372066 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.87■□□□□ 0.45
LDB3-204ENST00000372066 TMOD3Q9NYL9 352 aa17.87■□□□□ 0.45
LDB3-204ENST00000372066 LOC102724428A0A0B4J2F2 783 aa17.86■□□□□ 0.45
LDB3-204ENST00000372066 SIK1P57059 783 aa17.86■□□□□ 0.45
LDB3-204ENST00000372066 CFAP44Q96MT7 982 aa17.86■□□□□ 0.45
LDB3-204ENST00000372066 RWDD1Q9H446 243 aaPredicted RBP17.86■□□□□ 0.45
LDB3-204ENST00000372066 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.85■□□□□ 0.45
LDB3-204ENST00000372066 AMIGO3Q86WK7 504 aa17.85■□□□□ 0.45
LDB3-204ENST00000372066 IFNL2Q8IZJ0 200 aa17.85■□□□□ 0.45
LDB3-204ENST00000372066 CHMP4BQ9H444 224 aaKnown RBP17.85■□□□□ 0.45
LDB3-204ENST00000372066 NOP58Q9Y2X3 529 aaKnown RBP17.85■□□□□ 0.45
LDB3-204ENST00000372066 TUBGCP6Q96RT7 1819 aa17.84■□□□□ 0.45
LDB3-204ENST00000372066 GIGYF1O75420 1035 aaPredicted RBP17.84■□□□□ 0.45
LDB3-204ENST00000372066 IGHDP01880 384 aa17.84■□□□□ 0.45
LDB3-204ENST00000372066 TRIM27P14373 513 aa17.84■□□□□ 0.45
LDB3-204ENST00000372066 PHKG2P15735 406 aa17.84■□□□□ 0.45
LDB3-204ENST00000372066 ARHGAP45Q92619 1136 aa17.84■□□□□ 0.45
LDB3-204ENST00000372066 ASAP1Q9ULH1 1129 aa17.84■□□□□ 0.45
LDB3-204ENST00000372066 LINC00116Q8NCU8 138 aa17.83■□□□□ 0.45
LDB3-204ENST00000372066 CHD4Q14839 1912 aa17.83■□□□□ 0.45
LDB3-204ENST00000372066 NCAPD2Q15021 1401 aa17.83■□□□□ 0.45
LDB3-204ENST00000372066 COL24A1Q17RW2 1714 aa17.83■□□□□ 0.44
LDB3-204ENST00000372066 KDRP35968 1356 aa17.83■□□□□ 0.44
LDB3-204ENST00000372066 ATP6V1AP38606 617 aa17.83■□□□□ 0.44
LDB3-204ENST00000372066 SSFA2P28290 1259 aa17.82■□□□□ 0.44
LDB3-204ENST00000372066 SULT6B1Q6IMI4 303 aa17.82■□□□□ 0.44
LDB3-204ENST00000372066 NOB1Q9ULX3 412 aaKnown RBP17.82■□□□□ 0.44
LDB3-204ENST00000372066 DDRGK1Q96HY6 314 aa17.81■□□□□ 0.44
LDB3-204ENST00000372066 ATG3Q9NT62 314 aa17.81■□□□□ 0.44
LDB3-204ENST00000372066 TNNQ9UQP3 1299 aa17.81■□□□□ 0.44
LDB3-204ENST00000372066 GNPATO15228 680 aa17.8■□□□□ 0.44
LDB3-204ENST00000372066 VAMP4O75379 141 aa17.8■□□□□ 0.44
LDB3-204ENST00000372066 ITPK1Q13572 414 aa17.8■□□□□ 0.44
LDB3-204ENST00000372066 MBIPQ9NS73 344 aa17.8■□□□□ 0.44
LDB3-204ENST00000372066 PCDHB15Q9Y5E8 787 aa17.8■□□□□ 0.44
LDB3-204ENST00000372066 GOLGB1Q14789 3259 aaKnown RBP17.79■□□□□ 0.44
LDB3-204ENST00000372066 HDAC1Q13547 482 aaPredicted RBP17.79■□□□□ 0.44
LDB3-204ENST00000372066 LAS1LQ9Y4W2 734 aaKnown RBP17.79■□□□□ 0.44
LDB3-204ENST00000372066 IGSF1Q8N6C5 1336 aa17.79■□□□□ 0.44
LDB3-204ENST00000372066 C5P01031 1676 aa17.79■□□□□ 0.44
LDB3-204ENST00000372066 C8orf34Q49A92 452 aa17.79■□□□□ 0.44
LDB3-204ENST00000372066 ZBTB47Q9UFB7 747 aaPredicted RBP17.79■□□□□ 0.44
LDB3-204ENST00000372066 WWC3Q9ULE0 1092 aa17.79■□□□□ 0.44
LDB3-204ENST00000372066 RGS3P49796 1198 aa17.78■□□□□ 0.44
LDB3-204ENST00000372066 ITPRIPQ8IWB1 547 aa17.78■□□□□ 0.44
LDB3-204ENST00000372066 C4BP0C0L5 1744 aa17.77■□□□□ 0.44
LDB3-204ENST00000372066 PLEKHO1Q53GL0 409 aaPredicted RBP17.77■□□□□ 0.44
LDB3-204ENST00000372066 MRPL50Q8N5N7 158 aaKnown RBP17.77■□□□□ 0.44
LDB3-204ENST00000372066 TOGARAM1Q9Y4F4 1720 aa17.76■□□□□ 0.43
LDB3-204ENST00000372066 ERVV-2B6SEH9 535 aa17.76■□□□□ 0.43
LDB3-204ENST00000372066 HSP90AB1P08238 724 aaKnown RBP17.76■□□□□ 0.43
LDB3-204ENST00000372066 TWISTNBQ3B726 338 aaPredicted RBP17.76■□□□□ 0.43
LDB3-204ENST00000372066 SKAP1Q86WV1 359 aa17.76■□□□□ 0.43
LDB3-204ENST00000372066 AEBP1Q8IUX7 1158 aa17.76■□□□□ 0.43
LDB3-204ENST00000372066 RBM42Q9BTD8 480 aaKnown RBP17.76■□□□□ 0.43
LDB3-204ENST00000372066 THUMPD2Q9BTF0 503 aaKnown RBP17.76■□□□□ 0.43
LDB3-204ENST00000372066 PKD1L3Q7Z443 1732 aa17.76■□□□□ 0.43
LDB3-204ENST00000372066 TMEM57Q8N5G2 664 aa17.75■□□□□ 0.43
LDB3-204ENST00000372066 DCAF5Q96JK2 942 aa17.75■□□□□ 0.43
LDB3-204ENST00000372066 CACNA1FO60840 1977 aa17.75■□□□□ 0.43
LDB3-204ENST00000372066 TRAPPC3LQ5T215 181 aa17.74■□□□□ 0.43
LDB3-204ENST00000372066 GAS2L2Q8NHY3 880 aa17.74■□□□□ 0.43
LDB3-204ENST00000372066 API5Q9BZZ5 524 aaKnown RBP17.74■□□□□ 0.43
LDB3-204ENST00000372066 ZBTB40Q9NUA8 1239 aa17.74■□□□□ 0.43
LDB3-204ENST00000372066 RTCBQ9Y3I0 505 aaKnown RBP17.74■□□□□ 0.43
LDB3-204ENST00000372066 ABCC4O15439 1325 aa17.74■□□□□ 0.43
LDB3-204ENST00000372066 HTATSF1O43719 755 aaKnown RBP17.74■□□□□ 0.43
LDB3-204ENST00000372066 MMP10P09238 476 aa17.74■□□□□ 0.43
LDB3-204ENST00000372066 CABP4P57796 275 aa17.74■□□□□ 0.43
LDB3-204ENST00000372066 ZNF530Q6P9A1 599 aaPredicted RBP17.74■□□□□ 0.43
LDB3-204ENST00000372066 ITGB4P16144 1822 aa17.74■□□□□ 0.43
LDB3-204ENST00000372066 ATP10DQ9P241 1426 aa17.73■□□□□ 0.43
LDB3-204ENST00000372066 CHL1O00533 1208 aa17.73■□□□□ 0.43
LDB3-204ENST00000372066 AMOTQ4VCS5 1084 aa17.73■□□□□ 0.43
LDB3-204ENST00000372066 SLC4A9Q96Q91 983 aa17.73■□□□□ 0.43
LDB3-204ENST00000372066 GPBP1L1Q9HC44 474 aaPredicted RBP17.73■□□□□ 0.43
LDB3-204ENST00000372066 TAF1LQ8IZX4 1826 aa17.72■□□□□ 0.43
LDB3-204ENST00000372066 NPM2Q86SE8 214 aaKnown RBP17.72■□□□□ 0.43
LDB3-204ENST00000372066 ZNF526Q8TF50 670 aaPredicted RBP17.72■□□□□ 0.43
LDB3-204ENST00000372066 PDZRN3Q9UPQ7 1066 aa17.72■□□□□ 0.43
LDB3-204ENST00000372066 NLGN1Q8N2Q7 840 aa17.71■□□□□ 0.43
LDB3-204ENST00000372066 TSPYL6Q8N831 410 aa17.71■□□□□ 0.43
LDB3-204ENST00000372066 PLEKHG2Q9H7P9 1386 aa17.71■□□□□ 0.43
LDB3-204ENST00000372066 RC3H1Q5TC82 1133 aaKnown RBP17.7■□□□□ 0.42
LDB3-204ENST00000372066 SMC5Q8IY18 1101 aa17.7■□□□□ 0.42
LDB3-204ENST00000372066 ARHGEF1Q92888 912 aaKnown RBP17.7■□□□□ 0.42
LDB3-204ENST00000372066 C1orf141Q5JVX7 400 aa17.7■□□□□ 0.42
LDB3-204ENST00000372066 C8orf58Q8NAV2 365 aa17.7■□□□□ 0.42
LDB3-204ENST00000372066 RTF1Q92541 710 aaKnown RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms