RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 PLEKHG6Q3KR16 790 aa5.14□□□□□ -1.59
MCF2-203ENST00000370576 SDE2Q6IQ49 451 aa5.14□□□□□ -1.59
MCF2-203ENST00000370576 ARMC5Q96C12 935 aa5.14□□□□□ -1.59
MCF2-203ENST00000370576 ARHGEF10LQ9HCE6 1279 aa5.14□□□□□ -1.59
MCF2-203ENST00000370576 SNRKQ9NRH2 765 aa5.14□□□□□ -1.59
MCF2-203ENST00000370576 MYBBP1AQ9BQG0 1328 aaKnown RBP5.14□□□□□ -1.59
MCF2-203ENST00000370576 LAMB2P55268 1798 aa5.14□□□□□ -1.59
MCF2-203ENST00000370576 PPP1R37O75864 691 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 RHBDL3P58872 404 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 MAP2K5Q13163 448 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 MIER1Q8N108 512 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 TRIM52Q96A61 297 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 ZNF330Q9Y3S2 320 aaPredicted RBP5.13□□□□□ -1.59
MCF2-203ENST00000370576 A0A1W2PP64 1363 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 CDCA8Q53HL2 280 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 PNISRQ8TF01 805 aaKnown RBP5.13□□□□□ -1.59
MCF2-203ENST00000370576 SCYL1Q96KG9 808 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 VRTNQ9H8Y1 702 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.13□□□□□ -1.59
MCF2-203ENST00000370576 COL5A3P25940 1745 aaPredicted RBP5.13□□□□□ -1.59
MCF2-203ENST00000370576 RTL1A6NKG5 1358 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 ST20-MTHFSA0A0A6YYL1 179 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 GTF2E1P29083 439 aaPredicted RBP5.13□□□□□ -1.59
MCF2-203ENST00000370576 ITGAEP38570 1179 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 PTPROQ16827 1216 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 DCAF11Q8TEB1 546 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 CARD14Q9BXL6 1004 aa5.13□□□□□ -1.59
MCF2-203ENST00000370576 ZBED9Q6R2W3 1325 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 CENPJQ9HC77 1338 aaPredicted RBP5.12□□□□□ -1.59
MCF2-203ENST00000370576 PEX14O75381 377 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 ATG7O95352 703 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 MRPL58Q14197 206 aaKnown RBP5.12□□□□□ -1.59
MCF2-203ENST00000370576 ZNF746Q6NUN9 644 aaPredicted RBP5.12□□□□□ -1.59
MCF2-203ENST00000370576 METTL16Q86W50 562 aaKnown RBP5.12□□□□□ -1.59
MCF2-203ENST00000370576 NGEFQ8N5V2 710 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 SVIPQ8NHG7 77 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 ZNF512BQ96KM6 892 aaPredicted RBP5.12□□□□□ -1.59
MCF2-203ENST00000370576 THSD7AQ9UPZ6 1657 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 ROBO1Q9Y6N7 1651 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 KDRP35968 1356 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 PLEKHH1Q9ULM0 1364 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 SSFA2P28290 1259 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 GSE1Q14687 1217 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 SALL2Q9Y467 1007 aaPredicted RBP5.12□□□□□ -1.59
MCF2-203ENST00000370576 NEFMP07197 916 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 ERICH6BQ5W0A0 696 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 A0A1B0GUL6 1792 aa5.12□□□□□ -1.59
MCF2-203ENST00000370576 PHF14O94880 888 aa5.11□□□□□ -1.59
MCF2-203ENST00000370576 ZFYVE27Q5T4F4 411 aa5.11□□□□□ -1.59
MCF2-203ENST00000370576 PCMTD1Q96MG8 357 aaPredicted RBP5.11□□□□□ -1.59
MCF2-203ENST00000370576 SH3BP1Q9Y3L3 701 aa5.11□□□□□ -1.59
MCF2-203ENST00000370576 XPCQ01831 940 aaPredicted RBP5.11□□□□□ -1.59
MCF2-203ENST00000370576 MTMR14Q8NCE2 650 aa5.11□□□□□ -1.59
MCF2-203ENST00000370576 FBXO22Q8NEZ5 403 aa5.11□□□□□ -1.59
MCF2-203ENST00000370576 PIK3R5Q8WYR1 880 aa5.11□□□□□ -1.59
MCF2-203ENST00000370576 FARP1Q9Y4F1 1045 aaPredicted RBP5.11□□□□□ -1.59
MCF2-203ENST00000370576 BCORQ6W2J9 1755 aa5.11□□□□□ -1.59
MCF2-203ENST00000370576 USP19O94966 1318 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 ANKRD36CQ5JPF3 1778 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 TSPAN18Q96SJ8 248 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 CARD11Q9BXL7 1154 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 PNMA2Q9UL42 364 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 HDLBPQ00341 1268 aaKnown RBP5.1□□□□□ -1.59
MCF2-203ENST00000370576 ECM1Q16610 540 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 FAM9BQ8IZU0 186 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 KRI1Q8N9T8 703 aaKnown RBP5.1□□□□□ -1.59
MCF2-203ENST00000370576 ANP32EQ9BTT0 268 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 IRF2BPLQ9H1B7 796 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 PTMSP20962 102 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 LTKP29376 864 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 TMF1P82094 1093 aa5.1□□□□□ -1.59
MCF2-203ENST00000370576 COL6A1P12109 1028 aa5.09□□□□□ -1.59
MCF2-203ENST00000370576 LIG1P18858 919 aa5.09□□□□□ -1.59
MCF2-203ENST00000370576 TBX4P57082 545 aa5.09□□□□□ -1.59
MCF2-203ENST00000370576 TAGLNQ01995 201 aaKnown RBP5.09□□□□□ -1.59
MCF2-203ENST00000370576 ELOAQ14241 798 aaKnown RBP5.09□□□□□ -1.59
MCF2-203ENST00000370576 HELBQ8NG08 1087 aaPredicted RBP5.09□□□□□ -1.59
MCF2-203ENST00000370576 NOP58Q9Y2X3 529 aaKnown RBP5.09□□□□□ -1.59
MCF2-203ENST00000370576 SBNO1A3KN83 1393 aa5.09□□□□□ -1.59
MCF2-203ENST00000370576 NSD3Q9BZ95 1437 aa5.09□□□□□ -1.59
MCF2-203ENST00000370576 LY75O60449 1722 aa5.09□□□□□ -1.59
MCF2-203ENST00000370576 TJP1Q07157 1748 aa5.09□□□□□ -1.59
MCF2-203ENST00000370576 ITGB4P16144 1822 aa5.09□□□□□ -1.59
MCF2-203ENST00000370576 GIGYF1O75420 1035 aaPredicted RBP5.09□□□□□ -1.59
MCF2-203ENST00000370576 PROCA1Q8NCQ7 364 aaPredicted RBP5.09□□□□□ -1.59
MCF2-203ENST00000370576 CRISPLD2Q9H0B8 497 aa5.09□□□□□ -1.59
MCF2-203ENST00000370576 PRR36Q9H6K5 1346 aa5.09□□□□□ -1.59
MCF2-203ENST00000370576 SBF2Q86WG5 1849 aa5.09□□□□□ -1.59
MCF2-203ENST00000370576 OS9Q13438 667 aaPredicted RBP5.09□□□□□ -1.6
MCF2-203ENST00000370576 CCDC144BQ3MJ40 725 aa5.09□□□□□ -1.6
MCF2-203ENST00000370576 FAM163BP0C2L3 166 aa5.08□□□□□ -1.6
MCF2-203ENST00000370576 PPP2R2DQ66LE6 453 aa5.08□□□□□ -1.6
MCF2-203ENST00000370576 NBPF11Q86T75 865 aa5.08□□□□□ -1.6
MCF2-203ENST00000370576 SPOCK3Q9BQ16 436 aa5.08□□□□□ -1.6
MCF2-203ENST00000370576 DDX60Q8IY21 1712 aaKnown RBP5.08□□□□□ -1.6
MCF2-203ENST00000370576 NEUROD1Q13562 356 aa5.08□□□□□ -1.6
MCF2-203ENST00000370576 C1orf167Q5SNV9 1468 aa5.08□□□□□ -1.6
MCF2-203ENST00000370576 SOWAHDA6NJG2 315 aa5.08□□□□□ -1.6
MCF2-203ENST00000370576 EPB41L2O43491 1005 aaKnown RBP5.08□□□□□ -1.6
MCF2-203ENST00000370576 FOSBP53539 338 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms