RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 DUSP27Q5VZP5 1158 aa18.01■□□□□ 0.47
TPM3-211ENST00000368531 SMIM5Q71RC9 77 aa18.01■□□□□ 0.47
TPM3-211ENST00000368531 C8orf58Q8NAV2 365 aa18.01■□□□□ 0.47
TPM3-211ENST00000368531 AK7Q96M32 723 aa18.01■□□□□ 0.47
TPM3-211ENST00000368531 TEX13AQ9BXU3 409 aaPredicted RBP18.01■□□□□ 0.47
TPM3-211ENST00000368531 STK32BQ9NY57 414 aa18.01■□□□□ 0.47
TPM3-211ENST00000368531 LAMB4A4D0S4 1761 aa18.01■□□□□ 0.47
TPM3-211ENST00000368531 ZBED9Q6R2W3 1325 aa18■□□□□ 0.47
TPM3-211ENST00000368531 E9PSI1 815 aa18■□□□□ 0.47
TPM3-211ENST00000368531 STARD3NLO95772 234 aa18■□□□□ 0.47
TPM3-211ENST00000368531 CRKLP46109 303 aaKnown RBP18■□□□□ 0.47
TPM3-211ENST00000368531 PIP4K2AP48426 406 aaPredicted RBP18■□□□□ 0.47
TPM3-211ENST00000368531 EXOSC9Q06265 439 aaKnown RBP18■□□□□ 0.47
TPM3-211ENST00000368531 TSPYL6Q8N831 410 aa18■□□□□ 0.47
TPM3-211ENST00000368531 CICQ96RK0 1608 aaPredicted RBP17.99■□□□□ 0.47
TPM3-211ENST00000368531 GNPATO15228 680 aa17.99■□□□□ 0.47
TPM3-211ENST00000368531 A1BGP04217 495 aa17.99■□□□□ 0.47
TPM3-211ENST00000368531 CANXP27824 592 aaKnown RBP17.99■□□□□ 0.47
TPM3-211ENST00000368531 TFCP2L1Q9NZI6 479 aa17.99■□□□□ 0.47
TPM3-211ENST00000368531 TUBGCP6Q96RT7 1819 aa17.99■□□□□ 0.47
TPM3-211ENST00000368531 SLC15A2Q16348 729 aa17.98■□□□□ 0.47
TPM3-211ENST00000368531 INTS5Q6P9B9 1019 aaKnown RBP17.98■□□□□ 0.47
TPM3-211ENST00000368531 AKT1S1Q96B36 256 aa17.98■□□□□ 0.47
TPM3-211ENST00000368531 CCDC87Q9NVE4 849 aa17.98■□□□□ 0.47
TPM3-211ENST00000368531 PSDA5PKW4 1024 aaPredicted RBP17.97■□□□□ 0.47
TPM3-211ENST00000368531 PHF14O94880 888 aa17.97■□□□□ 0.47
TPM3-211ENST00000368531 HMGB2P26583 209 aaKnown RBP17.97■□□□□ 0.47
TPM3-211ENST00000368531 R3HDM1Q15032 1099 aaKnown RBP17.97■□□□□ 0.47
TPM3-211ENST00000368531 ZBTB1Q9Y2K1 713 aa17.97■□□□□ 0.47
TPM3-211ENST00000368531 ZNF330Q9Y3S2 320 aaPredicted RBP17.97■□□□□ 0.47
TPM3-211ENST00000368531 UBR3Q6ZT12 1888 aa17.97■□□□□ 0.47
TPM3-211ENST00000368531 CNTNAP4Q9C0A0 1308 aa17.97■□□□□ 0.47
TPM3-211ENST00000368531 TWISTNBQ3B726 338 aaPredicted RBP17.96■□□□□ 0.47
TPM3-211ENST00000368531 RC3H1Q5TC82 1133 aaKnown RBP17.96■□□□□ 0.47
TPM3-211ENST00000368531 TCERG1O14776 1098 aaKnown RBP17.95■□□□□ 0.46
TPM3-211ENST00000368531 HDGFL1Q5TGJ6 251 aa17.95■□□□□ 0.46
TPM3-211ENST00000368531 AMIGO3Q86WK7 504 aa17.95■□□□□ 0.46
TPM3-211ENST00000368531 RTCBQ9Y3I0 505 aaKnown RBP17.95■□□□□ 0.46
TPM3-211ENST00000368531 RPS6KA4O75676 772 aa17.94■□□□□ 0.46
TPM3-211ENST00000368531 MYL6BP14649 208 aa17.94■□□□□ 0.46
TPM3-211ENST00000368531 ARXQ96QS3 562 aa17.94■□□□□ 0.46
TPM3-211ENST00000368531 NBPF26B4DH59 902 aa17.93■□□□□ 0.46
TPM3-211ENST00000368531 ANXA1P04083 346 aa17.93■□□□□ 0.46
TPM3-211ENST00000368531 NBPF10Q6P3W6 841 aaKnown RBP17.93■□□□□ 0.46
TPM3-211ENST00000368531 TRMT2AQ8IZ69 625 aaKnown RBP17.93■□□□□ 0.46
TPM3-211ENST00000368531 NBPF15Q8N660 670 aa17.93■□□□□ 0.46
TPM3-211ENST00000368531 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.92■□□□□ 0.46
TPM3-211ENST00000368531 VAMP4O75379 141 aa17.92■□□□□ 0.46
TPM3-211ENST00000368531 HOXB7P09629 217 aa17.92■□□□□ 0.46
TPM3-211ENST00000368531 PROSER3Q2NL68 480 aa17.91■□□□□ 0.46
TPM3-211ENST00000368531 TRAPPC3LQ5T215 181 aa17.91■□□□□ 0.46
TPM3-211ENST00000368531 NPM2Q86SE8 214 aaKnown RBP17.91■□□□□ 0.46
TPM3-211ENST00000368531 COL23A1Q86Y22 540 aaPredicted RBP17.91■□□□□ 0.46
TPM3-211ENST00000368531 PDGFDQ9GZP0 370 aaPredicted RBP17.91■□□□□ 0.46
TPM3-211ENST00000368531 CHPF2Q9P2E5 772 aa17.91■□□□□ 0.46
TPM3-211ENST00000368531 QSER1Q2KHR3 1735 aa17.91■□□□□ 0.46
TPM3-211ENST00000368531 SOS1Q07889 1333 aaPredicted RBP17.91■□□□□ 0.46
TPM3-211ENST00000368531 PNPLA7Q6ZV29 1317 aa17.91■□□□□ 0.46
TPM3-211ENST00000368531 CCDC30Q5VVM6 783 aa17.9■□□□□ 0.46
TPM3-211ENST00000368531 SSFA2P28290 1259 aa17.89■□□□□ 0.45
TPM3-211ENST00000368531 IL6STP40189 918 aaPredicted RBP17.89■□□□□ 0.45
TPM3-211ENST00000368531 ARHGEF1Q92888 912 aaKnown RBP17.89■□□□□ 0.45
TPM3-211ENST00000368531 C4AP0C0L4 1744 aa17.89■□□□□ 0.45
TPM3-211ENST00000368531 RFC4P35249 363 aa17.88■□□□□ 0.45
TPM3-211ENST00000368531 EIF5P55010 431 aaKnown RBP17.88■□□□□ 0.45
TPM3-211ENST00000368531 PDIA6Q15084 440 aa17.88■□□□□ 0.45
TPM3-211ENST00000368531 DDX21Q9NR30 783 aaKnown RBP eCLIP17.88■□□□□ 0.45
TPM3-211ENST00000368531 TBC1D2BQ9UPU7 963 aa17.88■□□□□ 0.45
TPM3-211ENST00000368531 COL15A1P39059 1388 aa17.88■□□□□ 0.45
TPM3-211ENST00000368531 AIMP1Q12904 312 aaKnown RBP17.87■□□□□ 0.45
TPM3-211ENST00000368531 FLAD1Q8NFF5 587 aa17.87■□□□□ 0.45
TPM3-211ENST00000368531 STK31Q9BXU1 1019 aa17.87■□□□□ 0.45
TPM3-211ENST00000368531 DBF4Q9UBU7 674 aaPredicted RBP17.87■□□□□ 0.45
TPM3-211ENST00000368531 SRP68Q9UHB9 627 aaKnown RBP17.87■□□□□ 0.45
TPM3-211ENST00000368531 ERBB4Q15303 1308 aa17.87■□□□□ 0.45
TPM3-211ENST00000368531 A0A087WZG4 1122 aa17.85■□□□□ 0.45
TPM3-211ENST00000368531 ZPR1O75312 459 aa17.85■□□□□ 0.45
TPM3-211ENST00000368531 CASZ1Q86V15 1759 aa17.85■□□□□ 0.45
TPM3-211ENST00000368531 DZIP3Q86Y13 1208 aaKnown RBP17.85■□□□□ 0.45
TPM3-211ENST00000368531 XAGE3Q8WTP9 111 aa17.85■□□□□ 0.45
TPM3-211ENST00000368531 CHMP4AQ9BY43 222 aa17.85■□□□□ 0.45
TPM3-211ENST00000368531 ZBTB7AO95365 584 aa17.84■□□□□ 0.45
TPM3-211ENST00000368531 SLC4A2P04920 1241 aa17.84■□□□□ 0.45
TPM3-211ENST00000368531 MSL1Q68DK7 614 aa17.84■□□□□ 0.45
TPM3-211ENST00000368531 TTLL7Q6ZT98 887 aa17.84■□□□□ 0.45
TPM3-211ENST00000368531 COPS6Q7L5N1 327 aa17.84■□□□□ 0.45
TPM3-211ENST00000368531 BCL2L13Q9BXK5 485 aa17.84■□□□□ 0.45
TPM3-211ENST00000368531 PHAXQ9H814 394 aaKnown RBP17.84■□□□□ 0.45
TPM3-211ENST00000368531 HYPKQ9NX55 129 aa17.84■□□□□ 0.45
TPM3-211ENST00000368531 CACNA1FO60840 1977 aa17.84■□□□□ 0.45
TPM3-211ENST00000368531 USPL1Q5W0Q7 1092 aa17.83■□□□□ 0.44
TPM3-211ENST00000368531 LRP10Q7Z4F1 713 aa17.83■□□□□ 0.44
TPM3-211ENST00000368531 USP42Q9H9J4 1324 aaKnown RBP17.82■□□□□ 0.44
TPM3-211ENST00000368531 KIF6Q6ZMV9 814 aa17.82■□□□□ 0.44
TPM3-211ENST00000368531 G2E3Q7L622 706 aa17.82■□□□□ 0.44
TPM3-211ENST00000368531 ZBTB3Q9H5J0 574 aa17.82■□□□□ 0.44
TPM3-211ENST00000368531 NARFQ9UHQ1 456 aa17.82■□□□□ 0.44
TPM3-211ENST00000368531 ATF5Q9Y2D1 282 aaPredicted RBP17.82■□□□□ 0.44
TPM3-211ENST00000368531 SSH1Q8WYL5 1049 aa17.81■□□□□ 0.44
TPM3-211ENST00000368531 CAMTA2O94983 1202 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms