RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 IKBKGQ9Y6K9 419 aa11.31□□□□□ -0.6
CHD3-202ENST00000358181 CUL4BQ13620 913 aa11.31□□□□□ -0.6
CHD3-202ENST00000358181 RSPH3Q86UC2 560 aa11.31□□□□□ -0.6
CHD3-202ENST00000358181 ZNF444Q8N0Y2 327 aaPredicted RBP11.31□□□□□ -0.6
CHD3-202ENST00000358181 PPME1Q9Y570 386 aa11.31□□□□□ -0.6
CHD3-202ENST00000358181 RIOK3O14730 519 aaKnown RBP11.31□□□□□ -0.6
CHD3-202ENST00000358181 NASPP49321 788 aaPredicted RBP11.31□□□□□ -0.6
CHD3-202ENST00000358181 SMC1BQ8NDV3 1235 aa11.31□□□□□ -0.6
CHD3-202ENST00000358181 RANBP6O60518 1105 aaKnown RBP11.3□□□□□ -0.6
CHD3-202ENST00000358181 SLC4A2P04920 1241 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 ZSCAN25Q6NSZ9 544 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 WAPLQ7Z5K2 1190 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 PHACTR2O75167 634 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 CAVIN4Q5BKX8 364 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 MYO1BO43795 1136 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 CRCPO75575 148 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 CCDC144CPQ8IYA2 1237 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 DDX11Q96FC9 970 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 CCDC7Q96M83 1385 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 CCDC66A2RUB6 948 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 MAP7D1Q3KQU3 841 aa11.3□□□□□ -0.6
CHD3-202ENST00000358181 RPUSD2Q8IZ73 545 aaKnown RBP11.3□□□□□ -0.6
CHD3-202ENST00000358181 PRG4Q92954 1404 aaPredicted RBP11.3□□□□□ -0.6
CHD3-202ENST00000358181 A0A1W2PRG0 241 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 FSD2A1L4K1 749 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 ERCC5P28715 1186 aaPredicted RBP11.29□□□□□ -0.6
CHD3-202ENST00000358181 FGD6Q6ZV73 1430 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 ZBTB24O43167 697 aaPredicted RBP11.29□□□□□ -0.6
CHD3-202ENST00000358181 PDIA4P13667 645 aaKnown RBP11.29□□□□□ -0.6
CHD3-202ENST00000358181 NEK4P51957 841 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 RASA3Q14644 834 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 DAAM2Q86T65 1068 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 SCAPERQ9BY12 1400 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 AACSQ86V21 672 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 MYOM3Q5VTT5 1437 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 ANKRD50Q9ULJ7 1429 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 LPXNO60711 386 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 METTL24Q5JXM2 366 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 FKBP15Q5T1M5 1219 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 ACRBPQ8NEB7 543 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 CLSTN2Q9H4D0 955 aa11.29□□□□□ -0.6
CHD3-202ENST00000358181 NGLY1Q96IV0 654 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 C22orf23Q9BZE7 217 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 CBFA2T2O43439 604 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 CAMK4Q16566 473 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 SPG7Q9UQ90 795 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 NOD1Q9Y239 953 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 CFTRP13569 1480 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 STK25O00506 426 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 ACTN2P35609 894 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 SP4Q02446 784 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 GEN1Q17RS7 908 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 TWISTNBQ3B726 338 aaPredicted RBP11.28□□□□□ -0.6
CHD3-202ENST00000358181 CEP135Q66GS9 1140 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 ZBTB21Q9ULJ3 1066 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 PPP2R1AP30153 589 aa11.28□□□□□ -0.6
CHD3-202ENST00000358181 SREK1Q8WXA9 508 aaKnown RBP11.28□□□□□ -0.6
CHD3-202ENST00000358181 SPECC1Q5M775 1068 aa11.27□□□□□ -0.6
CHD3-202ENST00000358181 THUMPD2Q9BTF0 503 aaKnown RBP11.27□□□□□ -0.6
CHD3-202ENST00000358181 SEPT10Q9P0V9 454 aa11.27□□□□□ -0.6
CHD3-202ENST00000358181 CDC45O75419 566 aa11.27□□□□□ -0.6
CHD3-202ENST00000358181 PRDM11Q9NQV5 511 aa11.27□□□□□ -0.6
CHD3-202ENST00000358181 HIP1O00291 1037 aa11.27□□□□□ -0.61
CHD3-202ENST00000358181 PTCD1O75127 700 aaKnown RBP11.27□□□□□ -0.61
CHD3-202ENST00000358181 LETM1O95202 739 aaPredicted RBP11.27□□□□□ -0.61
CHD3-202ENST00000358181 HLTFQ14527 1009 aaKnown RBP eCLIP11.27□□□□□ -0.61
CHD3-202ENST00000358181 ARHGAP29Q52LW3 1261 aa11.27□□□□□ -0.61
CHD3-202ENST00000358181 CCDC65Q8IXS2 484 aa11.27□□□□□ -0.61
CHD3-202ENST00000358181 MIA2Q96PC5 1412 aa11.27□□□□□ -0.61
CHD3-202ENST00000358181 CNTLNQ9NXG0 1405 aa11.27□□□□□ -0.61
CHD3-202ENST00000358181 NCOA2Q15596 1464 aa11.27□□□□□ -0.61
CHD3-202ENST00000358181 ZNF530Q6P9A1 599 aaPredicted RBP11.27□□□□□ -0.61
CHD3-202ENST00000358181 ZBTB9Q96C00 473 aa11.27□□□□□ -0.61
CHD3-202ENST00000358181 IRAK4Q9NWZ3 460 aa11.27□□□□□ -0.61
CHD3-202ENST00000358181 CYP46A1Q9Y6A2 500 aa11.27□□□□□ -0.61
CHD3-202ENST00000358181 NUTM1Q86Y26 1132 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 GPATCH11Q8N954 259 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 XRCC6P12956 609 aaKnown RBP eCLIP11.26□□□□□ -0.61
CHD3-202ENST00000358181 VPS36Q86VN1 386 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 SHTN1A0MZ66 631 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 CASQ1P31415 396 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 HDGFL1Q5TGJ6 251 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 ANAPC4Q9UJX5 808 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 BAG4O95429 457 aaKnown RBP11.26□□□□□ -0.61
CHD3-202ENST00000358181 GUCY1B3Q02153 619 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 IPO4Q8TEX9 1081 aaKnown RBP11.26□□□□□ -0.61
CHD3-202ENST00000358181 CCT6BQ92526 530 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 EPSTI1Q96J88 318 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 CWC27Q6UX04 472 aaKnown RBP11.26□□□□□ -0.61
CHD3-202ENST00000358181 RNF34Q969K3 372 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 ERCC3P19447 782 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 TMEM266Q2M3C6 531 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 SKAP1Q86WV1 359 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 CRACR2AQ9BSW2 395 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 FAM107BQ9H098 131 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 VEZTQ9HBM0 779 aa11.26□□□□□ -0.61
CHD3-202ENST00000358181 CCDC174Q6PII3 467 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 MPRIPQ6WCQ1 1025 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 ZNF287Q9HBT7 754 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 NOC2LQ9Y3T9 749 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms