RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 TTC5Q8N0Z6 440 aa21.39■■□□□ 1.02
PDLIM1-201ENST00000329399 ARHGEF1Q92888 912 aaKnown RBP21.39■■□□□ 1.02
PDLIM1-201ENST00000329399 ZNF521Q96K83 1311 aa21.39■■□□□ 1.02
PDLIM1-201ENST00000329399 FLAD1Q8NFF5 587 aa21.39■■□□□ 1.01
PDLIM1-201ENST00000329399 PPP1R1BQ9UD71 204 aaPredicted RBP21.39■■□□□ 1.01
PDLIM1-201ENST00000329399 RTCBQ9Y3I0 505 aaKnown RBP21.39■■□□□ 1.01
PDLIM1-201ENST00000329399 UBR2Q8IWV8 1755 aa21.38■■□□□ 1.01
PDLIM1-201ENST00000329399 GOLGA2Q08379 1002 aa21.38■■□□□ 1.01
PDLIM1-201ENST00000329399 VSIG10Q8N0Z9 540 aa21.38■■□□□ 1.01
PDLIM1-201ENST00000329399 TRIM35Q9UPQ4 493 aa21.38■■□□□ 1.01
PDLIM1-201ENST00000329399 HEG1Q9ULI3 1381 aa21.37■■□□□ 1.01
PDLIM1-201ENST00000329399 APAF1O14727 1248 aa21.37■■□□□ 1.01
PDLIM1-201ENST00000329399 TRAPPC3LQ5T215 181 aa21.37■■□□□ 1.01
PDLIM1-201ENST00000329399 ARXQ96QS3 562 aa21.36■■□□□ 1.01
PDLIM1-201ENST00000329399 CCDC87Q9NVE4 849 aa21.36■■□□□ 1.01
PDLIM1-201ENST00000329399 ZBTB1Q9Y2K1 713 aa21.36■■□□□ 1.01
PDLIM1-201ENST00000329399 USP16Q9Y5T5 823 aa21.36■■□□□ 1.01
PDLIM1-201ENST00000329399 HMGB2P26583 209 aaKnown RBP21.35■■□□□ 1.01
PDLIM1-201ENST00000329399 FMNL2Q96PY5 1086 aa21.35■■□□□ 1.01
PDLIM1-201ENST00000329399 FHDC1Q9C0D6 1143 aaPredicted RBP21.35■■□□□ 1.01
PDLIM1-201ENST00000329399 SRP68Q9UHB9 627 aaKnown RBP21.35■■□□□ 1.01
PDLIM1-201ENST00000329399 A1BGP04217 495 aa21.33■■□□□ 1.01
PDLIM1-201ENST00000329399 WDR63Q8IWG1 891 aa21.33■■□□□ 1.01
PDLIM1-201ENST00000329399 COL24A1Q17RW2 1714 aa21.33■■□□□ 1.01
PDLIM1-201ENST00000329399 CICQ96RK0 1608 aaPredicted RBP21.33■■□□□ 1.01
PDLIM1-201ENST00000329399 E9PSI1 815 aa21.32■■□□□ 1
PDLIM1-201ENST00000329399 CANXP27824 592 aaKnown RBP21.32■■□□□ 1
PDLIM1-201ENST00000329399 PIP4K2AP48426 406 aaPredicted RBP21.32■■□□□ 1
PDLIM1-201ENST00000329399 SOS1Q07889 1333 aaPredicted RBP21.32■■□□□ 1
PDLIM1-201ENST00000329399 GYS1P13807 737 aa21.32■■□□□ 1
PDLIM1-201ENST00000329399 SYT17Q9BSW7 474 aa21.32■■□□□ 1
PDLIM1-201ENST00000329399 SUPT16HQ9Y5B9 1047 aaKnown RBP21.32■■□□□ 1
PDLIM1-201ENST00000329399 RFC4P35249 363 aa21.31■■□□□ 1
PDLIM1-201ENST00000329399 SALL2Q9Y467 1007 aaPredicted RBP21.31■■□□□ 1
PDLIM1-201ENST00000329399 ADRA2BP18089 450 aa21.3■■□□□ 1
PDLIM1-201ENST00000329399 POLD1P28340 1107 aa21.3■■□□□ 1
PDLIM1-201ENST00000329399 EIF4A1P60842 406 aaKnown RBP21.3■■□□□ 1
PDLIM1-201ENST00000329399 TRMT2AQ8IZ69 625 aaKnown RBP21.3■■□□□ 1
PDLIM1-201ENST00000329399 RNF123Q5XPI4 1314 aa21.29■■□□□ 1
PDLIM1-201ENST00000329399 STARD3NLO95772 234 aa21.29■■□□□ 1
PDLIM1-201ENST00000329399 SNRPA1P09661 255 aaKnown RBP21.28■■□□□ 1
PDLIM1-201ENST00000329399 EIF5P55010 431 aaKnown RBP21.28■■□□□ 1
PDLIM1-201ENST00000329399 SLFN5Q08AF3 891 aa21.28■■□□□ 1
PDLIM1-201ENST00000329399 FKBP8Q14318 412 aa21.28■■□□□ 1
PDLIM1-201ENST00000329399 WWC1Q8IX03 1113 aa21.28■■□□□ 1
PDLIM1-201ENST00000329399 TEX13AQ9BXU3 409 aaPredicted RBP21.27■■□□□ 1
PDLIM1-201ENST00000329399 USP42Q9H9J4 1324 aaKnown RBP21.27■■□□□ 1
PDLIM1-201ENST00000329399 NBPF26B4DH59 902 aa21.26■□□□□ 0.99
PDLIM1-201ENST00000329399 MMP10P09238 476 aa21.26■□□□□ 0.99
PDLIM1-201ENST00000329399 NBPF10Q6P3W6 841 aaKnown RBP21.26■□□□□ 0.99
PDLIM1-201ENST00000329399 KLHL34Q8N239 644 aa21.26■□□□□ 0.99
PDLIM1-201ENST00000329399 NBPF15Q8N660 670 aa21.26■□□□□ 0.99
PDLIM1-201ENST00000329399 NLGN2Q8NFZ4 835 aa21.26■□□□□ 0.99
PDLIM1-201ENST00000329399 BCL2L12Q9HB09 334 aa21.26■□□□□ 0.99
PDLIM1-201ENST00000329399 C4AP0C0L4 1744 aa21.26■□□□□ 0.99
PDLIM1-201ENST00000329399 GIGYF1O75420 1035 aaPredicted RBP21.26■□□□□ 0.99
PDLIM1-201ENST00000329399 USPL1Q5W0Q7 1092 aa21.26■□□□□ 0.99
PDLIM1-201ENST00000329399 TSPYL4Q9UJ04 414 aa21.26■□□□□ 0.99
PDLIM1-201ENST00000329399 CHL1O00533 1208 aa21.25■□□□□ 0.99
PDLIM1-201ENST00000329399 KRT24Q2M2I5 525 aa21.25■□□□□ 0.99
PDLIM1-201ENST00000329399 DUSP27Q5VZP5 1158 aa21.25■□□□□ 0.99
PDLIM1-201ENST00000329399 IL16Q14005 1332 aa21.24■□□□□ 0.99
PDLIM1-201ENST00000329399 KDM3BQ7LBC6 1761 aa21.24■□□□□ 0.99
PDLIM1-201ENST00000329399 COL15A1P39059 1388 aa21.24■□□□□ 0.99
PDLIM1-201ENST00000329399 LMOD3Q0VAK6 560 aa21.24■□□□□ 0.99
PDLIM1-201ENST00000329399 RCAN3Q9UKA8 241 aa21.24■□□□□ 0.99
PDLIM1-201ENST00000329399 ZNF330Q9Y3S2 320 aaPredicted RBP21.24■□□□□ 0.99
PDLIM1-201ENST00000329399 LAS1LQ9Y4W2 734 aaKnown RBP21.24■□□□□ 0.99
PDLIM1-201ENST00000329399 CALD1Q05682 793 aaKnown RBP21.23■□□□□ 0.99
PDLIM1-201ENST00000329399 NLGN1Q8N2Q7 840 aa21.23■□□□□ 0.99
PDLIM1-201ENST00000329399 CDCA7LQ96GN5 454 aa21.23■□□□□ 0.99
PDLIM1-201ENST00000329399 NARFQ9UHQ1 456 aa21.23■□□□□ 0.99
PDLIM1-201ENST00000329399 TBC1D2BQ9UPU7 963 aa21.23■□□□□ 0.99
PDLIM1-201ENST00000329399 DDR1Q08345 913 aa21.22■□□□□ 0.99
PDLIM1-201ENST00000329399 IL6STP40189 918 aaPredicted RBP21.21■□□□□ 0.99
PDLIM1-201ENST00000329399 MYH16Q9H6N6 1097 aa21.21■□□□□ 0.99
PDLIM1-201ENST00000329399 ZPR1O75312 459 aa21.2■□□□□ 0.98
PDLIM1-201ENST00000329399 TM4SF1P30408 202 aa21.2■□□□□ 0.98
PDLIM1-201ENST00000329399 ZNF853P0CG23 659 aa21.2■□□□□ 0.98
PDLIM1-201ENST00000329399 BABAM1Q9NWV8 329 aa21.19■□□□□ 0.98
PDLIM1-201ENST00000329399 CT47B1P0C2W7 299 aaPredicted RBP21.18■□□□□ 0.98
PDLIM1-201ENST00000329399 NFIXQ14938 502 aa21.18■□□□□ 0.98
PDLIM1-201ENST00000329399 MBIPQ9NS73 344 aa21.18■□□□□ 0.98
PDLIM1-201ENST00000329399 CAMTA2O94983 1202 aa21.17■□□□□ 0.98
PDLIM1-201ENST00000329399 CFAP44Q96MT7 982 aa21.17■□□□□ 0.98
PDLIM1-201ENST00000329399 POLRMTO00411 1230 aaKnown RBP21.16■□□□□ 0.98
PDLIM1-201ENST00000329399 PDIA6Q15084 440 aa21.16■□□□□ 0.98
PDLIM1-201ENST00000329399 EIF2S2P20042 333 aaKnown RBP21.15■□□□□ 0.98
PDLIM1-201ENST00000329399 PROSER3Q2NL68 480 aa21.15■□□□□ 0.98
PDLIM1-201ENST00000329399 TBC1D9BQ66K14 1250 aa21.15■□□□□ 0.98
PDLIM1-201ENST00000329399 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.15■□□□□ 0.98
PDLIM1-201ENST00000329399 NECTIN2Q92692 538 aa21.15■□□□□ 0.98
PDLIM1-201ENST00000329399 CD2APQ9Y5K6 639 aa21.15■□□□□ 0.98
PDLIM1-201ENST00000329399 ANXA1P04083 346 aa21.14■□□□□ 0.98
PDLIM1-201ENST00000329399 BICDL1Q6ZP65 573 aa21.14■□□□□ 0.98
PDLIM1-201ENST00000329399 DZIP3Q86Y13 1208 aaKnown RBP21.14■□□□□ 0.98
PDLIM1-201ENST00000329399 WWC3Q9ULE0 1092 aa21.14■□□□□ 0.98
PDLIM1-201ENST00000329399 A0A087WZG4 1122 aa21.13■□□□□ 0.97
PDLIM1-201ENST00000329399 MYL6BP14649 208 aa21.13■□□□□ 0.97
PDLIM1-201ENST00000329399 LRP10Q7Z4F1 713 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms