RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 VSIG10Q8N0Z9 540 aa21.26■□□□□ 0.99
HDDC2-201ENST00000318787 WWC3Q9ULE0 1092 aa21.26■□□□□ 0.99
HDDC2-201ENST00000318787 ZBTB1Q9Y2K1 713 aa21.26■□□□□ 0.99
HDDC2-201ENST00000318787 STARD3NLO95772 234 aa21.25■□□□□ 0.99
HDDC2-201ENST00000318787 GYS1P13807 737 aa21.25■□□□□ 0.99
HDDC2-201ENST00000318787 NLGN1Q8N2Q7 840 aa21.25■□□□□ 0.99
HDDC2-201ENST00000318787 PLEKHF1Q96S99 279 aa21.25■□□□□ 0.99
HDDC2-201ENST00000318787 PRKRIP1Q9H875 184 aaPredicted RBP21.25■□□□□ 0.99
HDDC2-201ENST00000318787 CHD4Q14839 1912 aa21.24■□□□□ 0.99
HDDC2-201ENST00000318787 ZPR1O75312 459 aa21.24■□□□□ 0.99
HDDC2-201ENST00000318787 NFE2L2Q16236 605 aa21.24■□□□□ 0.99
HDDC2-201ENST00000318787 CCDC146Q8IYE0 955 aa21.24■□□□□ 0.99
HDDC2-201ENST00000318787 COL15A1P39059 1388 aa21.24■□□□□ 0.99
HDDC2-201ENST00000318787 SOS1Q07889 1333 aaPredicted RBP21.24■□□□□ 0.99
HDDC2-201ENST00000318787 HTATSF1O43719 755 aaKnown RBP21.23■□□□□ 0.99
HDDC2-201ENST00000318787 N4BP2Q86UW6 1770 aaPredicted RBP21.23■□□□□ 0.99
HDDC2-201ENST00000318787 USP42Q9H9J4 1324 aaKnown RBP21.23■□□□□ 0.99
HDDC2-201ENST00000318787 ZNF316A6NFI3 1004 aaPredicted RBP21.23■□□□□ 0.99
HDDC2-201ENST00000318787 HOXD11P31277 338 aaPredicted RBP21.23■□□□□ 0.99
HDDC2-201ENST00000318787 THUMPD2Q9BTF0 503 aaKnown RBP21.23■□□□□ 0.99
HDDC2-201ENST00000318787 MIS18AQ9NYP9 233 aa21.23■□□□□ 0.99
HDDC2-201ENST00000318787 CD2APQ9Y5K6 639 aa21.23■□□□□ 0.99
HDDC2-201ENST00000318787 PARP3Q9Y6F1 533 aa21.23■□□□□ 0.99
HDDC2-201ENST00000318787 USPL1Q5W0Q7 1092 aa21.22■□□□□ 0.99
HDDC2-201ENST00000318787 GOLGB1Q14789 3259 aaKnown RBP21.21■□□□□ 0.99
HDDC2-201ENST00000318787 KDM3BQ7LBC6 1761 aa21.21■□□□□ 0.99
HDDC2-201ENST00000318787 FKBP8Q14318 412 aa21.21■□□□□ 0.99
HDDC2-201ENST00000318787 TAF7Q15545 349 aaPredicted RBP21.21■□□□□ 0.99
HDDC2-201ENST00000318787 NEUROD2Q15784 382 aa21.21■□□□□ 0.99
HDDC2-201ENST00000318787 NPM2Q86SE8 214 aaKnown RBP21.21■□□□□ 0.99
HDDC2-201ENST00000318787 TEX13AQ9BXU3 409 aaPredicted RBP21.21■□□□□ 0.99
HDDC2-201ENST00000318787 RRP7AQ9Y3A4 280 aaKnown RBP21.2■□□□□ 0.98
HDDC2-201ENST00000318787 KIF13BQ9NQT8 1826 aa21.19■□□□□ 0.98
HDDC2-201ENST00000318787 PRAMEF22A3QJZ6 481 aa21.19■□□□□ 0.98
HDDC2-201ENST00000318787 RIPK4P57078 832 aa21.19■□□□□ 0.98
HDDC2-201ENST00000318787 LAMB4A4D0S4 1761 aa21.18■□□□□ 0.98
HDDC2-201ENST00000318787 A1BGP04217 495 aa21.18■□□□□ 0.98
HDDC2-201ENST00000318787 PIP4K2AP48426 406 aaPredicted RBP21.18■□□□□ 0.98
HDDC2-201ENST00000318787 RNF216Q9NWF9 866 aaPredicted RBP21.18■□□□□ 0.98
HDDC2-201ENST00000318787 AFDNP55196 1824 aaKnown RBP21.16■□□□□ 0.98
HDDC2-201ENST00000318787 NARFQ9UHQ1 456 aa21.16■□□□□ 0.98
HDDC2-201ENST00000318787 USP16Q9Y5T5 823 aa21.16■□□□□ 0.98
HDDC2-201ENST00000318787 SCN7AQ01118 1682 aa21.15■□□□□ 0.98
HDDC2-201ENST00000318787 SNRPA1P09661 255 aaKnown RBP21.15■□□□□ 0.98
HDDC2-201ENST00000318787 YBX3P16989 372 aaKnown RBP eCLIP21.15■□□□□ 0.982e-9■□□□□ 10.6
HDDC2-201ENST00000318787 BICDL1Q6ZP65 573 aa21.15■□□□□ 0.98
HDDC2-201ENST00000318787 ADAMTS8Q9UP79 889 aa21.15■□□□□ 0.98
HDDC2-201ENST00000318787 TMPOP42166 694 aaKnown RBP21.14■□□□□ 0.98
HDDC2-201ENST00000318787 PNISRQ8TF01 805 aaKnown RBP21.14■□□□□ 0.98
HDDC2-201ENST00000318787 TBC1D2BQ9UPU7 963 aa21.14■□□□□ 0.98
HDDC2-201ENST00000318787 KIAA1551Q9HCM1 1747 aa21.14■□□□□ 0.97
HDDC2-201ENST00000318787 A0A087WZG4 1122 aa21.13■□□□□ 0.97
HDDC2-201ENST00000318787 DDR1Q08345 913 aa21.13■□□□□ 0.97
HDDC2-201ENST00000318787 RUNDC1Q96C34 613 aa21.13■□□□□ 0.97
HDDC2-201ENST00000318787 EIF5P55010 431 aaKnown RBP21.12■□□□□ 0.97
HDDC2-201ENST00000318787 LMOD3Q0VAK6 560 aa21.12■□□□□ 0.97
HDDC2-201ENST00000318787 C10orf71Q711Q0 1435 aa21.12■□□□□ 0.97
HDDC2-201ENST00000318787 BCORQ6W2J9 1755 aa21.12■□□□□ 0.97
HDDC2-201ENST00000318787 A0A0G2JLW4 131 aa21.11■□□□□ 0.97
HDDC2-201ENST00000318787 IL6STP40189 918 aaPredicted RBP21.11■□□□□ 0.97
HDDC2-201ENST00000318787 TSPYL4Q9UJ04 414 aa21.11■□□□□ 0.97
HDDC2-201ENST00000318787 PXDNLA1KZ92 1463 aa21.11■□□□□ 0.97
HDDC2-201ENST00000318787 GRIN3BO60391 1043 aa21.1■□□□□ 0.97
HDDC2-201ENST00000318787 NFIXQ14938 502 aa21.1■□□□□ 0.97
HDDC2-201ENST00000318787 LAS1LQ9Y4W2 734 aaKnown RBP21.1■□□□□ 0.97
HDDC2-201ENST00000318787 POLRMTO00411 1230 aaKnown RBP21.1■□□□□ 0.97
HDDC2-201ENST00000318787 DZIP3Q86Y13 1208 aaKnown RBP21.1■□□□□ 0.97
HDDC2-201ENST00000318787 BCL2L12Q9HB09 334 aa21.1■□□□□ 0.97
HDDC2-201ENST00000318787 ANP32CO43423 234 aa21.09■□□□□ 0.97
HDDC2-201ENST00000318787 TM4SF1P30408 202 aa21.09■□□□□ 0.97
HDDC2-201ENST00000318787 BRCA1P38398 1863 aaKnown RBP21.08■□□□□ 0.96
HDDC2-201ENST00000318787 TGFB2P61812 414 aa21.08■□□□□ 0.96
HDDC2-201ENST00000318787 NGEFQ8N5V2 710 aa21.08■□□□□ 0.96
HDDC2-201ENST00000318787 ZNF784Q8NCA9 323 aaPredicted RBP21.08■□□□□ 0.96
HDDC2-201ENST00000318787 NPHP1O15259 732 aa21.07■□□□□ 0.96
HDDC2-201ENST00000318787 DPEP1P16444 411 aa21.07■□□□□ 0.96
HDDC2-201ENST00000318787 EIF4A1P60842 406 aaKnown RBP21.07■□□□□ 0.96
HDDC2-201ENST00000318787 TBC1D9BQ66K14 1250 aa21.07■□□□□ 0.96
HDDC2-201ENST00000318787 BCS1LQ9Y276 419 aa21.07■□□□□ 0.96
HDDC2-201ENST00000318787 SERPINB2P05120 415 aa21.06■□□□□ 0.96
HDDC2-201ENST00000318787 CCDC184Q52MB2 194 aa21.06■□□□□ 0.96
HDDC2-201ENST00000318787 NRXN2Q9P2S2 1712 aa21.05■□□□□ 0.96
HDDC2-201ENST00000318787 SENP3-EIF4A1A0A087X0R7 540 aa21.04■□□□□ 0.96
HDDC2-201ENST00000318787 NBPF26B4DH59 902 aa21.04■□□□□ 0.96
HDDC2-201ENST00000318787 GIGYF1O75420 1035 aaPredicted RBP21.04■□□□□ 0.96
HDDC2-201ENST00000318787 MYL6BP14649 208 aa21.04■□□□□ 0.96
HDDC2-201ENST00000318787 CHRNA5P30532 468 aa21.04■□□□□ 0.96
HDDC2-201ENST00000318787 NBPF10Q6P3W6 841 aaKnown RBP21.04■□□□□ 0.96
HDDC2-201ENST00000318787 NBPF15Q8N660 670 aa21.04■□□□□ 0.96
HDDC2-201ENST00000318787 CAMTA2O94983 1202 aa21.03■□□□□ 0.96
HDDC2-201ENST00000318787 CACNA1SQ13698 1873 aa21.02■□□□□ 0.96
HDDC2-201ENST00000318787 APAF1O14727 1248 aa21.02■□□□□ 0.96
HDDC2-201ENST00000318787 EIF2S2P20042 333 aaKnown RBP21.02■□□□□ 0.96
HDDC2-201ENST00000318787 CCDC24Q8N4L8 307 aa21.02■□□□□ 0.96
HDDC2-201ENST00000318787 MRS2Q9HD23 443 aa21.02■□□□□ 0.96
HDDC2-201ENST00000318787 TRIM35Q9UPQ4 493 aa21.02■□□□□ 0.96
HDDC2-201ENST00000318787 CARMIL3Q8ND23 1372 aa21.01■□□□□ 0.95
HDDC2-201ENST00000318787 NECTIN2Q92692 538 aa21.01■□□□□ 0.95
HDDC2-201ENST00000318787 SETDB2Q96T68 719 aa21.01■□□□□ 0.95
HDDC2-201ENST00000318787 ZNF652Q9Y2D9 606 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms