RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 CANXP27824 592 aaKnown RBP23.42■■□□□ 1.34
HMGA1-201ENST00000311487 PROSER3Q2NL68 480 aa23.41■■□□□ 1.34
HMGA1-201ENST00000311487 CCDC125Q86Z20 511 aa23.41■■□□□ 1.34
HMGA1-201ENST00000311487 VSIG10Q8N0Z9 540 aa23.41■■□□□ 1.34
HMGA1-201ENST00000311487 CRKLP46109 303 aaKnown RBP23.41■■□□□ 1.34
HMGA1-201ENST00000311487 AMIGO3Q86WK7 504 aa23.4■■□□□ 1.34
HMGA1-201ENST00000311487 CHPF2Q9P2E5 772 aa23.4■■□□□ 1.34
HMGA1-201ENST00000311487 TJP1Q07157 1748 aa23.4■■□□□ 1.34
HMGA1-201ENST00000311487 STARD3NLO95772 234 aa23.39■■□□□ 1.33
HMGA1-201ENST00000311487 SLC27A3Q5K4L6 730 aa23.39■■□□□ 1.33
HMGA1-201ENST00000311487 ZBTB1Q9Y2K1 713 aa23.39■■□□□ 1.33
HMGA1-201ENST00000311487 NBPF26B4DH59 902 aa23.38■■□□□ 1.33
HMGA1-201ENST00000311487 NBPF14Q5TI25 921 aa23.38■■□□□ 1.33
HMGA1-201ENST00000311487 NBPF10Q6P3W6 841 aaKnown RBP23.38■■□□□ 1.33
HMGA1-201ENST00000311487 INTS5Q6P9B9 1019 aaKnown RBP23.38■■□□□ 1.33
HMGA1-201ENST00000311487 NBPF15Q8N660 670 aa23.38■■□□□ 1.33
HMGA1-201ENST00000311487 ARXQ96QS3 562 aa23.38■■□□□ 1.33
HMGA1-201ENST00000311487 PHF14O94880 888 aa23.37■■□□□ 1.33
HMGA1-201ENST00000311487 GNPATO15228 680 aa23.36■■□□□ 1.33
HMGA1-201ENST00000311487 BCAR3O75815 825 aa23.36■■□□□ 1.33
HMGA1-201ENST00000311487 ZNF827Q17R98 1081 aa23.36■■□□□ 1.33
HMGA1-201ENST00000311487 SSH1Q8WYL5 1049 aa23.36■■□□□ 1.33
HMGA1-201ENST00000311487 SLC4A2P04920 1241 aa23.35■■□□□ 1.33
HMGA1-201ENST00000311487 PDIA6Q15084 440 aa23.35■■□□□ 1.33
HMGA1-201ENST00000311487 TEX13AQ9BXU3 409 aaPredicted RBP23.35■■□□□ 1.33
HMGA1-201ENST00000311487 ANO8Q9HCE9 1232 aaPredicted RBP23.35■■□□□ 1.33
HMGA1-201ENST00000311487 AIMP1Q12904 312 aaKnown RBP23.35■■□□□ 1.33
HMGA1-201ENST00000311487 PHAXQ9H814 394 aaKnown RBP23.35■■□□□ 1.33
HMGA1-201ENST00000311487 CCDC87Q9NVE4 849 aa23.35■■□□□ 1.33
HMGA1-201ENST00000311487 MYH14Q7Z406 1995 aaKnown RBP23.35■■□□□ 1.33
HMGA1-201ENST00000311487 CCDC30Q5VVM6 783 aa23.34■■□□□ 1.33
HMGA1-201ENST00000311487 G2E3Q7L622 706 aa23.33■■□□□ 1.33
HMGA1-201ENST00000311487 AK7Q96M32 723 aa23.33■■□□□ 1.33
HMGA1-201ENST00000311487 HOXB7P09629 217 aa23.33■■□□□ 1.32
HMGA1-201ENST00000311487 RARSP54136 660 aaKnown RBP23.33■■□□□ 1.32
HMGA1-201ENST00000311487 TAF1LQ8IZX4 1826 aa23.33■■□□□ 1.32
HMGA1-201ENST00000311487 SMC4Q9NTJ3 1288 aa23.32■■□□□ 1.32
HMGA1-201ENST00000311487 TFCP2L1Q9NZI6 479 aa23.32■■□□□ 1.32
HMGA1-201ENST00000311487 STK31Q9BXU1 1019 aa23.31■■□□□ 1.32
HMGA1-201ENST00000311487 C4BP0C0L5 1744 aa23.31■■□□□ 1.32
HMGA1-201ENST00000311487 COL5A3P25940 1745 aaPredicted RBP23.31■■□□□ 1.32
HMGA1-201ENST00000311487 DBF4Q9UBU7 674 aaPredicted RBP23.3■■□□□ 1.32
HMGA1-201ENST00000311487 RCAN3Q9UKA8 241 aa23.3■■□□□ 1.32
HMGA1-201ENST00000311487 ZNF428Q96B54 188 aa23.29■■□□□ 1.32
HMGA1-201ENST00000311487 TBC1D2BQ9UPU7 963 aa23.29■■□□□ 1.32
HMGA1-201ENST00000311487 LAMB4A4D0S4 1761 aa23.29■■□□□ 1.32
HMGA1-201ENST00000311487 FRAT1Q92837 279 aaPredicted RBP23.29■■□□□ 1.32
HMGA1-201ENST00000311487 AKT1S1Q96B36 256 aa23.29■■□□□ 1.32
HMGA1-201ENST00000311487 DDX21Q9NR30 783 aaKnown RBP eCLIP23.29■■□□□ 1.32
HMGA1-201ENST00000311487 CNTNAP4Q9C0A0 1308 aa23.28■■□□□ 1.32
HMGA1-201ENST00000311487 TTLL7Q6ZT98 887 aa23.28■■□□□ 1.32
HMGA1-201ENST00000311487 XAGE3Q8WTP9 111 aa23.28■■□□□ 1.32
HMGA1-201ENST00000311487 MSH5O43196 834 aa23.27■■□□□ 1.32
HMGA1-201ENST00000311487 COPS6Q7L5N1 327 aa23.27■■□□□ 1.32
HMGA1-201ENST00000311487 MRPL50Q8N5N7 158 aaKnown RBP23.27■■□□□ 1.32
HMGA1-201ENST00000311487 PDGFDQ9GZP0 370 aaPredicted RBP23.27■■□□□ 1.32
HMGA1-201ENST00000311487 RTCBQ9Y3I0 505 aaKnown RBP23.27■■□□□ 1.32
HMGA1-201ENST00000311487 SUPT16HQ9Y5B9 1047 aaKnown RBP23.27■■□□□ 1.32
HMGA1-201ENST00000311487 PLIN1O60240 522 aa23.27■■□□□ 1.32
HMGA1-201ENST00000311487 LRP10Q7Z4F1 713 aa23.27■■□□□ 1.32
HMGA1-201ENST00000311487 RGPD3A6NKT7 1758 aaPredicted RBP23.26■■□□□ 1.31
HMGA1-201ENST00000311487 RGPD4Q7Z3J3 1758 aa23.26■■□□□ 1.31
HMGA1-201ENST00000311487 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.26■■□□□ 1.31
HMGA1-201ENST00000311487 NUP188Q5SRE5 1749 aa23.26■■□□□ 1.31
HMGA1-201ENST00000311487 ZNF831Q5JPB2 1677 aa23.26■■□□□ 1.31
HMGA1-201ENST00000311487 RPS6KA4O75676 772 aa23.25■■□□□ 1.31
HMGA1-201ENST00000311487 CT47B1P0C2W7 299 aaPredicted RBP23.25■■□□□ 1.31
HMGA1-201ENST00000311487 SLC15A2Q16348 729 aa23.25■■□□□ 1.31
HMGA1-201ENST00000311487 RC3H1Q5TC82 1133 aaKnown RBP23.25■■□□□ 1.31
HMGA1-201ENST00000311487 NOB1Q9ULX3 412 aaKnown RBP23.25■■□□□ 1.31
HMGA1-201ENST00000311487 RREB1Q92766 1687 aa23.25■■□□□ 1.31
HMGA1-201ENST00000311487 EIF5P55010 431 aaKnown RBP23.25■■□□□ 1.31
HMGA1-201ENST00000311487 ARHGEF1Q92888 912 aaKnown RBP23.25■■□□□ 1.31
HMGA1-201ENST00000311487 ZBTB3Q9H5J0 574 aa23.25■■□□□ 1.31
HMGA1-201ENST00000311487 STK32BQ9NY57 414 aa23.25■■□□□ 1.31
HMGA1-201ENST00000311487 TNNQ9UQP3 1299 aa23.25■■□□□ 1.31
HMGA1-201ENST00000311487 SOS1Q07889 1333 aaPredicted RBP23.24■■□□□ 1.31
HMGA1-201ENST00000311487 NPM2Q86SE8 214 aaKnown RBP23.24■■□□□ 1.31
HMGA1-201ENST00000311487 SRP68Q9UHB9 627 aaKnown RBP23.24■■□□□ 1.31
HMGA1-201ENST00000311487 PSDA5PKW4 1024 aaPredicted RBP23.23■■□□□ 1.31
HMGA1-201ENST00000311487 IL6STP40189 918 aaPredicted RBP23.23■■□□□ 1.31
HMGA1-201ENST00000311487 HYPKQ9NX55 129 aa23.23■■□□□ 1.31
HMGA1-201ENST00000311487 F6X3S4 739 aa23.23■■□□□ 1.31
HMGA1-201ENST00000311487 FLIIQ13045 1269 aa23.23■■□□□ 1.31
HMGA1-201ENST00000311487 ALDH1L2Q3SY69 923 aa23.23■■□□□ 1.31
HMGA1-201ENST00000311487 TRAPPC3LQ5T215 181 aa23.23■■□□□ 1.31
HMGA1-201ENST00000311487 COL15A1P39059 1388 aa23.23■■□□□ 1.31
HMGA1-201ENST00000311487 FKBP5Q13451 457 aaPredicted RBP23.22■■□□□ 1.31
HMGA1-201ENST00000311487 R3HDM1Q15032 1099 aaKnown RBP23.22■■□□□ 1.31
HMGA1-201ENST00000311487 DZIP3Q86Y13 1208 aaKnown RBP23.22■■□□□ 1.31
HMGA1-201ENST00000311487 COL23A1Q86Y22 540 aaPredicted RBP23.22■■□□□ 1.31
HMGA1-201ENST00000311487 CICQ96RK0 1608 aaPredicted RBP23.22■■□□□ 1.31
HMGA1-201ENST00000311487 SRCAPQ6ZRS2 3230 aa23.22■■□□□ 1.31
HMGA1-201ENST00000311487 SOCS7O14512 581 aa23.21■■□□□ 1.31
HMGA1-201ENST00000311487 PNPLA7Q6ZV29 1317 aa23.21■■□□□ 1.31
HMGA1-201ENST00000311487 RFC4P35249 363 aa23.2■■□□□ 1.3
HMGA1-201ENST00000311487 CLUAP1Q96AJ1 413 aa23.2■■□□□ 1.3
HMGA1-201ENST00000311487 HLFQ16534 295 aa23.2■■□□□ 1.3
HMGA1-201ENST00000311487 ERBB4Q15303 1308 aa23.19■■□□□ 1.3
HMGA1-201ENST00000311487 PI4KAP2A4QPH2 592 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms