RNA–Protein interactions for RNA: ENSMUST00000108530.1

Nup88-202, Transcript of Nuclear pore complex protein Nup88, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Nup88, Length 2,389 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-202ENSMUST00000108530 Cgnl1Q6AW69 1298 aa18.36■□□□□ 0.53
Nup88-202ENSMUST00000108530 Mmp8O70138 465 aa18.35■□□□□ 0.53
Nup88-202ENSMUST00000108530 Gcc1Q9D4H2 778 aa18.35■□□□□ 0.53
Nup88-202ENSMUST00000108530 Tbc1d32Q3URV1 1296 aa18.35■□□□□ 0.53
Nup88-202ENSMUST00000108530 Ccnl1Q52KE7 532 aaKnown RBP18.35■□□□□ 0.53
Nup88-202ENSMUST00000108530 Dnai1Q8C0M8 701 aa18.35■□□□□ 0.53
Nup88-202ENSMUST00000108530 Lrrc59Q922Q8 307 aaKnown RBP18.35■□□□□ 0.53
Nup88-202ENSMUST00000108530 Atg3Q9CPX6 314 aa18.35■□□□□ 0.53
Nup88-202ENSMUST00000108530 Sart3Q9JLI8 962 aaKnown RBP18.35■□□□□ 0.53
Nup88-202ENSMUST00000108530 Nek4Q9Z1J2 792 aa18.35■□□□□ 0.53
Nup88-202ENSMUST00000108530 Marf1Q8BJ34 1730 aaKnown RBP18.35■□□□□ 0.53
Nup88-202ENSMUST00000108530 Slc4a10Q5DTL9 1118 aa18.34■□□□□ 0.53
Nup88-202ENSMUST00000108530 AceP09470 1312 aa18.34■□□□□ 0.53
Nup88-202ENSMUST00000108530 Ier5O89113 308 aa18.34■□□□□ 0.53
Nup88-202ENSMUST00000108530 Hspa1lP16627 641 aa18.33■□□□□ 0.53
Nup88-202ENSMUST00000108530 Tbc1d9Q3UYK3 1264 aa18.33■□□□□ 0.52
Nup88-202ENSMUST00000108530 Ppm1gQ61074 542 aa18.33■□□□□ 0.52
Nup88-202ENSMUST00000108530 Tgfb1i1Q62219 461 aa18.33■□□□□ 0.52
Nup88-202ENSMUST00000108530 ApobrQ8VBT6 942 aa18.33■□□□□ 0.52
Nup88-202ENSMUST00000108530 Bcar3Q9QZK2 820 aa18.33■□□□□ 0.52
Nup88-202ENSMUST00000108530 Col4a1P02463 1669 aa18.32■□□□□ 0.52
Nup88-202ENSMUST00000108530 Lmbr1lQ9D1E5 489 aa18.32■□□□□ 0.52
Nup88-202ENSMUST00000108530 Cyp46a1Q9WVK8 500 aa18.32■□□□□ 0.52
Nup88-202ENSMUST00000108530 Flad1Q8R123 492 aa18.31■□□□□ 0.52
Nup88-202ENSMUST00000108530 Tmc1Q8R4P5 757 aa18.31■□□□□ 0.52
Nup88-202ENSMUST00000108530 Psrc1Q9D0P7 329 aa18.31■□□□□ 0.52
Nup88-202ENSMUST00000108530 Zeb2Q9R0G7 1215 aa18.31■□□□□ 0.52
Nup88-202ENSMUST00000108530 CalcaP70160 136 aa18.31■□□□□ 0.52
Nup88-202ENSMUST00000108530 Ppm1mQ8BU27 406 aa18.31■□□□□ 0.52
Nup88-202ENSMUST00000108530 Elp1Q7TT37 1333 aaKnown RBP18.3■□□□□ 0.52
Nup88-202ENSMUST00000108530 Ggt6Q6PDE7 497 aa18.3■□□□□ 0.52
Nup88-202ENSMUST00000108530 Cap2Q9CYT6 476 aa18.3■□□□□ 0.52
Nup88-202ENSMUST00000108530 Tjp1P39447 1745 aaKnown RBP18.29■□□□□ 0.52
Nup88-202ENSMUST00000108530 GorabQ8BRM2 368 aa18.29■□□□□ 0.52
Nup88-202ENSMUST00000108530 Mcmdc2E9Q956 681 aa18.28■□□□□ 0.52
Nup88-202ENSMUST00000108530 Pa2g4P50580 394 aaKnown RBP18.28■□□□□ 0.52
Nup88-202ENSMUST00000108530 Mcm2P97310 904 aa18.28■□□□□ 0.52
Nup88-202ENSMUST00000108530 Grm8P47743 908 aa18.28■□□□□ 0.52
Nup88-202ENSMUST00000108530 Ccdc129Q14B48 1034 aa18.28■□□□□ 0.52
Nup88-202ENSMUST00000108530 HellsQ60848 821 aa18.28■□□□□ 0.52
Nup88-202ENSMUST00000108530 Jarid2Q62315 1234 aa18.27■□□□□ 0.52
Nup88-202ENSMUST00000108530 Kcnh4A2A5F7 1018 aa18.27■□□□□ 0.52
Nup88-202ENSMUST00000108530 Sik1Q60670 779 aa18.27■□□□□ 0.52
Nup88-202ENSMUST00000108530 Eno4Q8C042 619 aa18.27■□□□□ 0.52
Nup88-202ENSMUST00000108530 Kif2cQ922S8 721 aa18.27■□□□□ 0.52
Nup88-202ENSMUST00000108530 MypnQ5DTJ9 1315 aa18.27■□□□□ 0.51
Nup88-202ENSMUST00000108530 ScaperF8VQ70 1398 aaKnown RBP18.26■□□□□ 0.51
Nup88-202ENSMUST00000108530 Tceal9Q9DD24 104 aa18.26■□□□□ 0.51
Nup88-202ENSMUST00000108530 Crb1Q8VHS2 1405 aa18.26■□□□□ 0.51
Nup88-202ENSMUST00000108530 Syde2E9PUP1 1314 aa18.26■□□□□ 0.51
Nup88-202ENSMUST00000108530 NmiO35309 314 aa18.26■□□□□ 0.51
Nup88-202ENSMUST00000108530 Ppp1r9bQ6R891 817 aaKnown RBP18.26■□□□□ 0.51
Nup88-202ENSMUST00000108530 Tnpo1Q8BFY9 898 aaKnown RBP18.26■□□□□ 0.51
Nup88-202ENSMUST00000108530 Tiam2Q6ZPF3 1715 aa18.26■□□□□ 0.51
Nup88-202ENSMUST00000108530 Smg7Q5RJH6 1138 aaKnown RBP18.25■□□□□ 0.51
Nup88-202ENSMUST00000108530 Rabep1O35551 862 aa18.25■□□□□ 0.51
Nup88-202ENSMUST00000108530 Exoc5Q3TPX4 708 aa18.24■□□□□ 0.51
Nup88-202ENSMUST00000108530 Morc2aQ69ZX6 1030 aa18.24■□□□□ 0.51
Nup88-202ENSMUST00000108530 CenppQ9CZ92 286 aa18.24■□□□□ 0.51
Nup88-202ENSMUST00000108530 Hmox1P14901 289 aa18.24■□□□□ 0.51
Nup88-202ENSMUST00000108530 Ptpdc1Q6NZK8 747 aa18.24■□□□□ 0.51
Nup88-202ENSMUST00000108530 Ankle2Q6P1H6 964 aa18.24■□□□□ 0.51
Nup88-202ENSMUST00000108530 Eif3aP23116 1344 aaKnown RBP18.24■□□□□ 0.51
Nup88-202ENSMUST00000108530 Prune1Q8BIW1 454 aa18.23■□□□□ 0.51
Nup88-202ENSMUST00000108530 Slc5a4bQ91ZP4 660 aa18.23■□□□□ 0.51
Nup88-202ENSMUST00000108530 Q9D2X8 372 aa18.23■□□□□ 0.51
Nup88-202ENSMUST00000108530 Trim52Q8CDV4 233 aa18.23■□□□□ 0.51
Nup88-202ENSMUST00000108530 Tfip11Q9ERA6 838 aaKnown RBP18.23■□□□□ 0.51
Nup88-202ENSMUST00000108530 Sptbn5F6UCX4 1208 aa18.22■□□□□ 0.51
Nup88-202ENSMUST00000108530 Pdia3P27773 505 aaKnown RBP18.22■□□□□ 0.51
Nup88-202ENSMUST00000108530 Hdac6Q9Z2V5 1149 aa18.22■□□□□ 0.51
Nup88-202ENSMUST00000108530 Soga3Q6NZL0 945 aa18.22■□□□□ 0.51
Nup88-202ENSMUST00000108530 Ddx60E9PZQ1 1711 aa18.21■□□□□ 0.51
Nup88-202ENSMUST00000108530 Fkbp5Q64378 456 aa18.21■□□□□ 0.51
Nup88-202ENSMUST00000108530 Ankrd23Q812A3 306 aa18.21■□□□□ 0.51
Nup88-202ENSMUST00000108530 Edc3Q8K2D3 508 aaKnown RBP18.21■□□□□ 0.51
Nup88-202ENSMUST00000108530 Tpx2A2APB8 745 aaKnown RBP18.2■□□□□ 0.5
Nup88-202ENSMUST00000108530 Ripor2Q80U16 1078 aa18.2■□□□□ 0.5
Nup88-202ENSMUST00000108530 Ppp6r3Q922D4 844 aa18.2■□□□□ 0.5
Nup88-202ENSMUST00000108530 Ets1P27577 440 aa18.2■□□□□ 0.5
Nup88-202ENSMUST00000108530 Mum1Q6DID5 682 aa18.2■□□□□ 0.5
Nup88-202ENSMUST00000108530 Zbtb40Q6PCS8 1258 aa18.2■□□□□ 0.5
Nup88-202ENSMUST00000108530 RestQ8VIG1 1082 aa18.19■□□□□ 0.5
Nup88-202ENSMUST00000108530 Gm12185Q5NCB2 835 aa18.19■□□□□ 0.5
Nup88-202ENSMUST00000108530 Adam1aQ60813 791 aa18.19■□□□□ 0.5
Nup88-202ENSMUST00000108530 Shank3Q4ACU6 1730 aa18.19■□□□□ 0.5
Nup88-202ENSMUST00000108530 Zkscan2G3X952 960 aa18.18■□□□□ 0.5
Nup88-202ENSMUST00000108530 Sf3b2Q3UJB0 878 aaKnown RBP18.18■□□□□ 0.5
Nup88-202ENSMUST00000108530 Dcaf5Q80T85 946 aa18.18■□□□□ 0.5
Nup88-202ENSMUST00000108530 Mast2Q60592 1734 aa18.18■□□□□ 0.5
Nup88-202ENSMUST00000108530 PappaQ8R4K8 1624 aa18.18■□□□□ 0.5
Nup88-202ENSMUST00000108530 Hsp90aa1P07901 733 aaKnown RBP18.18■□□□□ 0.5
Nup88-202ENSMUST00000108530 GpkowQ56A08 488 aa18.18■□□□□ 0.5
Nup88-202ENSMUST00000108530 Adora1Q60612 326 aa18.18■□□□□ 0.5
Nup88-202ENSMUST00000108530 Ginm1Q91WR6 327 aa18.18■□□□□ 0.5
Nup88-202ENSMUST00000108530 Zbtb3Q91X45 518 aa18.18■□□□□ 0.5
Nup88-202ENSMUST00000108530 Nucb1Q02819 459 aaKnown RBP18.17■□□□□ 0.5
Nup88-202ENSMUST00000108530 Zbtb45Q52KG4 520 aa18.17■□□□□ 0.5
Nup88-202ENSMUST00000108530 Nlrp9bQ66X22 1003 aa18.17■□□□□ 0.5
Nup88-202ENSMUST00000108530 Ddb1Q3U1J4 1140 aaKnown RBP18.17■□□□□ 0.5
Retrieved 100 of 22,080 RNA–protein pairs in 26.2 ms