RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SORBS1Q9BX66 1292 aaKnown RBP13.63□□□□□ -0.23
USP39-220ENST00000613444 NDUFAF1Q9Y375 327 aa13.63□□□□□ -0.23
USP39-220ENST00000613444 FAM86C2PA6NEL3 165 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 MRASO14807 208 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 ZW10O43264 779 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 NUDT21O43809 227 aaKnown RBP13.62□□□□□ -0.23
USP39-220ENST00000613444 PCDH7O60245 1069 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 EEDO75530 441 aaKnown RBP13.62□□□□□ -0.23
USP39-220ENST00000613444 ANXA4P09525 319 aaPredicted RBP13.62□□□□□ -0.23
USP39-220ENST00000613444 BSGP35613 385 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 DPP6P42658 865 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 DGKQP52824 942 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 RPS15AP62244 130 aaKnown RBP13.62□□□□□ -0.23
USP39-220ENST00000613444 CYP4F3Q08477 520 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 TIGD2Q4W5G0 525 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 PAGE3Q5JUK9 113 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 PRR23BQ6ZRT6 265 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 DEFB107AQ8IZN7 70 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 FAM9CQ8IZT9 166 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 MACROD1Q9BQ69 325 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 KLHL25Q9H0H3 589 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 NLGN3Q9NZ94 848 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 LRIT1Q9P2V4 623 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 EXO1Q9UQ84 846 aaKnown RBP13.62□□□□□ -0.23
USP39-220ENST00000613444 SCN3AQ9NY46 2000 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 A0A088AWK7 358 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 DYTNA2CJ06 578 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 CCDC154A6NI56 674 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 C4orf51C9J302 202 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 FXYD1O00168 92 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 TRIM38O00635 465 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 MYO1DO94832 1006 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 STATHP02808 62 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 GBAP04062 536 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 PROS1P07225 676 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 TPP2P29144 1249 aaPredicted RBP13.62□□□□□ -0.23
USP39-220ENST00000613444 EPHA4P54764 986 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 PHC1P78364 1004 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 NR1D2Q14995 579 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 LPAL2Q16609 132 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 FAM174BQ3ZCQ3 159 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 MMEL1Q495T6 779 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 SPANXN4Q5MJ08 99 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 HACD2Q6Y1H2 254 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 RABEPKQ7Z6M1 372 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 TRPV3Q8NET8 790 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 TESCQ96BS2 214 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 TM4SF19Q96DZ7 209 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 KLHL31Q9H511 634 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 GAREM1Q9H706 876 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 MCM8Q9UJA3 840 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 PCDHGA7Q9Y5G6 932 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.62□□□□□ -0.23
USP39-220ENST00000613444 CACNA1HO95180 2353 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 GPR179Q6PRD1 2367 aa13.62□□□□□ -0.23
USP39-220ENST00000613444 RTCAO00442 366 aaKnown RBP13.61□□□□□ -0.23
USP39-220ENST00000613444 NDUFS4O43181 175 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 DFNA5O60443 496 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 PRMT3O60678 531 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 LRATO95237 230 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 KLK1P06870 262 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 MYF5P13349 255 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 GLB1P16278 677 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 PGM1P36871 562 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 ART3Q13508 389 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 UGT8Q16880 541 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 TRIM61Q5EBN2 209 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 KLHL35Q6PF15 583 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 PGAM4Q8N0Y7 254 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 TBC1D19Q8N5T2 526 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 MS4A6EQ96DS6 147 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 CLPTM1LQ96KA5 538 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 THTPAQ9BU02 230 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 SLC6A16Q9GZN6 736 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 REXO4Q9GZR2 422 aaKnown RBP13.61□□□□□ -0.23
USP39-220ENST00000613444 MMADHCQ9H3L0 296 aaPredicted RBP13.61□□□□□ -0.23
USP39-220ENST00000613444 SEMA6CQ9H3T2 930 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 WDR41Q9HAD4 459 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 PRM3Q9NNZ6 103 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 SLC6A14Q9UN76 642 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 RALGAPA1Q6GYQ0 2036 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 SPTBP11277 2137 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 LY6G6EA0A0G2JKS1 128 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 RHPN2P1A8MT19 583 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 ANGPT2O15123 496 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 SH3BP5O60239 455 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 PGRP06401 933 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 ST6GAL1P15907 406 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 PRPS1L1P21108 318 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 CLNS1AP54105 237 aaKnown RBP13.61□□□□□ -0.23
USP39-220ENST00000613444 ZNF763Q0D2J5 394 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 PGM2L1Q6PCE3 622 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 C16orf89Q6UX73 402 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 RNF44Q7L0R7 432 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 DPP10Q8N608 796 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 OR2I1PQ8NGU4 316 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 OR4C6Q8NH72 309 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 GFM2Q969S9 779 aaKnown RBP13.61□□□□□ -0.23
USP39-220ENST00000613444 ROPN1LQ96C74 230 aa13.61□□□□□ -0.23
USP39-220ENST00000613444 TRAPPC9Q96Q05 1148 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms