RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CCNYL3P0C7X3 344 aa8.81□□□□□ -1
LDLR-210ENST00000559340 CCL4P13236 92 aa8.81□□□□□ -1
LDLR-210ENST00000559340 AGXTP21549 392 aa8.81□□□□□ -1
LDLR-210ENST00000559340 RPL14P50914 215 aaKnown RBP8.81□□□□□ -1
LDLR-210ENST00000559340 ATP1A2P50993 1020 aa8.81□□□□□ -1
LDLR-210ENST00000559340 ERVPABLB-1P60509 514 aa8.81□□□□□ -1
LDLR-210ENST00000559340 BST1Q10588 318 aa8.81□□□□□ -1
LDLR-210ENST00000559340 FAM53BQ14153 422 aa8.81□□□□□ -1
LDLR-210ENST00000559340 RTP5Q14D33 572 aa8.81□□□□□ -1
LDLR-210ENST00000559340 HERC3Q15034 1050 aa8.81□□□□□ -1
LDLR-210ENST00000559340 DEFB110Q30KQ9 67 aa8.81□□□□□ -1
LDLR-210ENST00000559340 TMEM35AQ53FP2 167 aa8.81□□□□□ -1
LDLR-210ENST00000559340 LETMD1Q6P1Q0 360 aa8.81□□□□□ -1
LDLR-210ENST00000559340 UNQ6494/PRO21346Q6UXR6 183 aa8.81□□□□□ -1
LDLR-210ENST00000559340 RPS27LQ71UM5 84 aaKnown RBP8.81□□□□□ -1
LDLR-210ENST00000559340 SYVN1Q86TM6 617 aa8.81□□□□□ -1
LDLR-210ENST00000559340 CRLF3Q8IUI8 442 aa8.81□□□□□ -1
LDLR-210ENST00000559340 PLD3Q8IV08 490 aa8.81□□□□□ -1
LDLR-210ENST00000559340 OR4N4Q8N0Y3 316 aa8.81□□□□□ -1
LDLR-210ENST00000559340 CDYL2Q8N8U2 506 aa8.81□□□□□ -1
LDLR-210ENST00000559340 BMPERQ8N8U9 685 aa8.81□□□□□ -1
LDLR-210ENST00000559340 ZNF740Q8NDX6 193 aa8.81□□□□□ -1
LDLR-210ENST00000559340 OR1L3Q8NH93 324 aa8.81□□□□□ -1
LDLR-210ENST00000559340 PROKR1Q8TCW9 393 aa8.81□□□□□ -1
LDLR-210ENST00000559340 ZNF473Q8WTR7 871 aaKnown RBP8.81□□□□□ -1
LDLR-210ENST00000559340 CKAP2Q8WWK9 683 aa8.81□□□□□ -1
LDLR-210ENST00000559340 USP7Q93009 1102 aa8.81□□□□□ -1
LDLR-210ENST00000559340 CLIP3Q96DZ5 547 aa8.81□□□□□ -1
LDLR-210ENST00000559340 TM4SF19Q96DZ7 209 aa8.81□□□□□ -1
LDLR-210ENST00000559340 MVB12AQ96EY5 273 aa8.81□□□□□ -1
LDLR-210ENST00000559340 CDK15Q96Q40 435 aa8.81□□□□□ -1
LDLR-210ENST00000559340 C17orf62Q9BQA9 187 aa8.81□□□□□ -1
LDLR-210ENST00000559340 DPH2Q9BQC3 489 aaPredicted RBP8.81□□□□□ -1
LDLR-210ENST00000559340 SPRTNQ9H040 489 aaPredicted RBP8.81□□□□□ -1
LDLR-210ENST00000559340 ACTR5Q9H9F9 607 aaPredicted RBP8.81□□□□□ -1
LDLR-210ENST00000559340 THSD1Q9NS62 852 aa8.81□□□□□ -1
LDLR-210ENST00000559340 VTI1BQ9UEU0 232 aa8.81□□□□□ -1
LDLR-210ENST00000559340 ZNF490Q9ULM2 529 aaPredicted RBP8.81□□□□□ -1
LDLR-210ENST00000559340 MSRB2Q9Y3D2 182 aa8.81□□□□□ -1
LDLR-210ENST00000559340 PCDHGA7Q9Y5G6 932 aa8.81□□□□□ -1
LDLR-210ENST00000559340 SLC22A7Q9Y694 548 aa8.81□□□□□ -1
LDLR-210ENST00000559340 USP24Q9UPU5 2620 aa8.81□□□□□ -1
LDLR-210ENST00000559340 FER1L5A0AVI2 2057 aa8.81□□□□□ -1
LDLR-210ENST00000559340 SDK2Q58EX2 2172 aa8.8□□□□□ -1
LDLR-210ENST00000559340 TRABD2BA6NFA1 517 aa8.8□□□□□ -1
LDLR-210ENST00000559340 AGRPO00253 132 aa8.8□□□□□ -1
LDLR-210ENST00000559340 MANBAO00462 879 aa8.8□□□□□ -1
LDLR-210ENST00000559340 PPP6CO00743 305 aa8.8□□□□□ -1
LDLR-210ENST00000559340 FFAR3O14843 346 aa8.8□□□□□ -1
LDLR-210ENST00000559340 DSCR3O14972 297 aa8.8□□□□□ -1
LDLR-210ENST00000559340 GPR42O15529 346 aa8.8□□□□□ -1
LDLR-210ENST00000559340 NDUFS4O43181 175 aa8.8□□□□□ -1
LDLR-210ENST00000559340 ZNF749O43361 778 aa8.8□□□□□ -1
LDLR-210ENST00000559340 RGS14O43566 566 aa8.8□□□□□ -1
LDLR-210ENST00000559340 PRAMEF4O60810 478 aa8.8□□□□□ -1
LDLR-210ENST00000559340 CPNE3O75131 537 aaKnown RBP8.8□□□□□ -1
LDLR-210ENST00000559340 DXOO77932 396 aaKnown RBP8.8□□□□□ -1
LDLR-210ENST00000559340 CD22P20273 847 aa8.8□□□□□ -1
LDLR-210ENST00000559340 AVPR1BP47901 424 aa8.8□□□□□ -1
LDLR-210ENST00000559340 RAP1GDS1P52306 607 aa8.8□□□□□ -1
LDLR-210ENST00000559340 CLDN6P56747 220 aa8.8□□□□□ -1
LDLR-210ENST00000559340 CSTF3Q12996 717 aaKnown RBP8.8□□□□□ -1
LDLR-210ENST00000559340 CUL3Q13618 768 aa8.8□□□□□ -1
LDLR-210ENST00000559340 DDX39BQ13838 428 aaKnown RBP8.8□□□□□ -1
LDLR-210ENST00000559340 MAP7Q14244 749 aa8.8□□□□□ -1
LDLR-210ENST00000559340 IMPG1Q17R60 797 aa8.8□□□□□ -1
LDLR-210ENST00000559340 AP5B1Q2VPB7 878 aa8.8□□□□□ -1
LDLR-210ENST00000559340 PRTGQ2VWP7 1150 aa8.8□□□□□ -1
LDLR-210ENST00000559340 TOR1AIP1Q5JTV8 583 aa8.8□□□□□ -1
LDLR-210ENST00000559340 SH2D4BQ5SQS7 431 aa8.8□□□□□ -1
LDLR-210ENST00000559340 DEPDC1Q5TB30 811 aa8.8□□□□□ -1
LDLR-210ENST00000559340 PRAMEF9Q5VWM5 478 aa8.8□□□□□ -1
LDLR-210ENST00000559340 FRMPD2BQ6IN97 320 aa8.8□□□□□ -1
LDLR-210ENST00000559340 PRMT9Q6P2P2 845 aa8.8□□□□□ -1
LDLR-210ENST00000559340 TRIM40Q6P9F5 258 aa8.8□□□□□ -1
LDLR-210ENST00000559340 RGS9BPQ6ZS82 235 aa8.8□□□□□ -1
LDLR-210ENST00000559340 RNF165Q6ZSG1 346 aa8.8□□□□□ -1
LDLR-210ENST00000559340 PAGE2Q7Z2X7 111 aa8.8□□□□□ -1
LDLR-210ENST00000559340 VN1R4Q7Z5H5 301 aa8.8□□□□□ -1
LDLR-210ENST00000559340 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.8□□□□□ -1
LDLR-210ENST00000559340 ANKRD53Q8N9V6 530 aa8.8□□□□□ -1
LDLR-210ENST00000559340 KDF1Q8NAX2 398 aaPredicted RBP8.8□□□□□ -1
LDLR-210ENST00000559340 HUS1BQ8NHY5 278 aa8.8□□□□□ -1
LDLR-210ENST00000559340 WDR20Q8TBZ3 569 aa8.8□□□□□ -1
LDLR-210ENST00000559340 CREB3L4Q8TEY5 395 aa8.8□□□□□ -1
LDLR-210ENST00000559340 GAL3ST3Q96A11 431 aa8.8□□□□□ -1
LDLR-210ENST00000559340 RGMAQ96B86 450 aa8.8□□□□□ -1
LDLR-210ENST00000559340 MTFMTQ96DP5 389 aaKnown RBP8.8□□□□□ -1
LDLR-210ENST00000559340 METTL2AQ96IZ6 378 aaKnown RBP8.8□□□□□ -1
LDLR-210ENST00000559340 ZNF578Q96N58 590 aaPredicted RBP8.8□□□□□ -1
LDLR-210ENST00000559340 LRFN5Q96NI6 719 aa8.8□□□□□ -1
LDLR-210ENST00000559340 SLC46A1Q96NT5 459 aa8.8□□□□□ -1
LDLR-210ENST00000559340 QRFPRQ96P65 431 aa8.8□□□□□ -1
LDLR-210ENST00000559340 TBCDQ9BTW9 1192 aa8.8□□□□□ -1
LDLR-210ENST00000559340 SCNM1Q9BWG6 230 aa8.8□□□□□ -1
LDLR-210ENST00000559340 MS4A8Q9BY19 250 aa8.8□□□□□ -1
LDLR-210ENST00000559340 FAM117AQ9C073 453 aa8.8□□□□□ -1
LDLR-210ENST00000559340 SPNS1Q9H2V7 528 aa8.8□□□□□ -1
LDLR-210ENST00000559340 ANKHQ9HCJ1 492 aa8.8□□□□□ -1
LDLR-210ENST00000559340 ACSS2Q9NR19 701 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms