RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 PMS2P11Q13670 270 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 KCNJ11Q14654 390 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 SIX1Q15475 284 aaPredicted RBP8.62□□□□□ -1.03
VPS13D-212ENST00000543766 SOWAHAQ2M3V2 549 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 TRMT5Q32P41 509 aaKnown RBP8.62□□□□□ -1.03
VPS13D-212ENST00000543766 SLC35F1Q5T1Q4 408 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 USP53Q70EK8 1073 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 PLPPR4Q7Z2D5 763 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 GPR137CQ8N3F9 429 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 VGLL2Q8N8G2 317 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 TSPAN17Q96FV3 270 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 DMRTA2Q96SC8 542 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 PARD6AQ9NPB6 346 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 DYRK4Q9NR20 520 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 GHRLQ9UBU3 117 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.62□□□□□ -1.03
VPS13D-212ENST00000543766 PCDHB5Q9Y5E4 795 aa8.62□□□□□ -1.03
VPS13D-212ENST00000543766 A0A1W2PPQ1 181 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 A0A1W2PQ09 198 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 MEIOCA2RUB1 952 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ATP5J2-PTCD1G3V325 749 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 PTCD1O75127 700 aaKnown RBP8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ERN1O75460 977 aaKnown RBP8.61□□□□□ -1.03
VPS13D-212ENST00000543766 H6PDO95479 791 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 TDP2O95551 362 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 COL9A1P20849 921 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 PTGER3P43115 390 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 KCNJ3P48549 501 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 AP3S2P59780 193 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 UBE2KP61086 200 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 IRX4P78413 519 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 CDKL1Q00532 357 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 SKP2Q13309 424 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 CSHL1Q14406 222 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 GRB14Q14449 540 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 GPNMBQ14956 572 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 CHI3L2Q15782 390 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 BMT2Q1RMZ1 405 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 TRIM61Q5EBN2 209 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 GPAT2Q6NUI2 795 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 NIPA1Q7RTP0 329 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 SPATA19Q7Z5L4 167 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 NRROSQ86YC3 692 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ATPAF2Q8N5M1 289 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 POGLUT1Q8NBL1 392 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 FAM98AQ8NCA5 519 aaKnown RBP8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ACOT11Q8WXI4 607 aaPredicted RBP8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ELMO1Q92556 727 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 OTUB2Q96DC9 234 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 TCEAL4Q96EI5 215 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 LGR4Q9BXB1 951 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ZNF552Q9H707 407 aaPredicted RBP8.61□□□□□ -1.03
VPS13D-212ENST00000543766 GFOD1Q9NXC2 390 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 GDF2Q9UK05 429 aaPredicted RBP8.61□□□□□ -1.03
VPS13D-212ENST00000543766 COL1A1P02452 1464 aaPredicted RBP8.61□□□□□ -1.03
VPS13D-212ENST00000543766 TANC1Q9C0D5 1861 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 PLSCR5A0PG75 271 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 CXorf65A6NEN9 183 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 EFCAB10A6NFE3 127 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 PEX12O00623 359 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 CNIH1O95406 144 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 PEX11BO96011 259 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ELFN1P0C7U0 828 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 GRIA1P42261 906 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 FMO5P49326 533 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 GALNT2Q10471 571 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 SLC22A10Q63ZE4 541 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ZNF544Q6NX49 715 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 CES3Q6UWW8 571 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 PLEKHG7Q6ZR37 379 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 C19orf35Q6ZS72 473 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 OTOP1Q7RTM1 612 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ZDHHC13Q8IUH4 622 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 CMTR1Q8N1G2 835 aaKnown RBP8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ZNF614Q8N883 585 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 OR2T3Q8NH03 318 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 SEMA3CQ99985 751 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 HOPXQ9BPY8 73 aaPredicted RBP8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ZFYVE21Q9BQ24 234 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 MTIF3Q9H2K0 278 aaKnown RBP8.61□□□□□ -1.03
VPS13D-212ENST00000543766 SPNS1Q9H2V7 528 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 NPIPA2E9PIF3 369 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 PDHXO00330 501 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 CTDSP2O14595 271 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 PPM1DO15297 605 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 TTC4O95801 387 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ACSM4P0C7M7 580 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 MMP12P39900 470 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 KCNC1P48547 511 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 KCNK10P57789 538 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 SNAP25P60880 206 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 SRSF11Q05519 484 aaKnown RBP8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ZBED5Q49AG3 693 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 C2CD6Q53TS8 623 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 PIP5KL1Q5T9C9 394 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 FAM111BQ6SJ93 734 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 FRMD7Q6ZUT3 714 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 CENPUQ71F23 418 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 ZNF767PQ75MW2 155 aa8.61□□□□□ -1.03
VPS13D-212ENST00000543766 SLC46A3Q7Z3Q1 461 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms