RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 RBP1P09455 135 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 SFTPCP11686 197 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 ALDH18A1P54886 795 aaKnown RBP12.3□□□□□ -0.44
VPS28-216ENST00000533806 ATP1A4Q13733 1029 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 SLBPQ14493 270 aaKnown RBP eCLIP12.3□□□□□ -0.44
VPS28-216ENST00000533806 PFKFB4Q16877 469 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 SYT16Q17RD7 645 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 TSNAXIP1Q2TAA8 658 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 CPZQ66K79 652 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 KLC3Q6P597 504 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 TMIGD1Q6UXZ0 262 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 SHISA6Q6ZSJ9 500 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 MED25Q71SY5 747 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 TDRPQ86YL5 185 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 RAB43Q86YS6 212 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 ZC3H7AQ8IWR0 971 aaKnown RBP12.3□□□□□ -0.44
VPS28-216ENST00000533806 CNPY4Q8N129 248 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 ZNF843Q8N446 348 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 TBC1D19Q8N5T2 526 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 TMEM102Q8N9M5 508 aaPredicted RBP12.3□□□□□ -0.44
VPS28-216ENST00000533806 AENQ8WTP8 325 aaKnown RBP12.3□□□□□ -0.44
VPS28-216ENST00000533806 EXT2Q93063 718 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 PTCD3Q96EY7 689 aaKnown RBP12.3□□□□□ -0.44
VPS28-216ENST00000533806 SEC16BQ96JE7 1060 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 MESP1Q9BRJ9 268 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 ARHGAP9Q9BRR9 750 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 ING2Q9H160 280 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 RHBGQ9H310 441 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 SOX17Q9H6I2 414 aaPredicted RBP12.3□□□□□ -0.44
VPS28-216ENST00000533806 MKKSQ9NPJ1 570 aaPredicted RBP12.3□□□□□ -0.44
VPS28-216ENST00000533806 PSMC3IPQ9P2W1 217 aaPredicted RBP12.3□□□□□ -0.44
VPS28-216ENST00000533806 TRPC4Q9UBN4 977 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 HS3ST3B1Q9Y662 390 aa12.3□□□□□ -0.44
VPS28-216ENST00000533806 A0A1W2PQ72 361 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 ARGFXA6NJG6 315 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 C4orf51C9J302 202 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 SGK494L7N484 410 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 E2F3O00716 465 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 FFAR3O14843 346 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 CLGNO14967 610 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 GPR42O15529 346 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 GALR3O60755 368 aaPredicted RBP12.29□□□□□ -0.44
VPS28-216ENST00000533806 DNAJB6O75190 326 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 H2AFYO75367 372 aaKnown RBP12.29□□□□□ -0.44
VPS28-216ENST00000533806 DNAJB5O75953 348 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 BMP10O95393 424 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 ATXN8OSP0DMR3 200 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 ALOX12P18054 663 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 IL1RNP18510 177 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 CXCR2P25025 360 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 GSTM2P28161 218 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 OTX2P32243 289 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 AVPR1BP47901 424 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 SOX8P57073 446 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 MAT1AQ00266 395 aaKnown RBP12.29□□□□□ -0.44
VPS28-216ENST00000533806 OCA2Q04671 838 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 HERC3Q15034 1050 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 RBBP5Q15291 538 aaKnown RBP12.29□□□□□ -0.44
VPS28-216ENST00000533806 ADPRMQ3LIE5 342 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 KIRREL2Q6UWL6 708 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 LCA5Q86VQ0 697 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.29□□□□□ -0.446e-7■■■■■ 139.2
VPS28-216ENST00000533806 SNX31Q8N9S9 440 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 TTLQ8NG68 377 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 ACMSDQ8TDX5 336 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 UTP15Q8TED0 518 aaKnown RBP12.29□□□□□ -0.44
VPS28-216ENST00000533806 MIEF2Q96C03 454 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 ABHD17AQ96GS6 310 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 MRPL57Q9BQC6 102 aaKnown RBP12.29□□□□□ -0.44
VPS28-216ENST00000533806 EFCAB11Q9BUY7 163 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 SLC25A18Q9H1K4 315 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 KLHL31Q9H511 634 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 PPCSQ9HAB8 311 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 SEMA3GQ9NS98 782 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 C14orf105Q9NVL8 296 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 P4HTMQ9NXG6 502 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 OPTCQ9UBM4 332 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 NAALAD2Q9Y3Q0 740 aa12.29□□□□□ -0.44
VPS28-216ENST00000533806 IQANK1A0A1B0GTG1 560 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 LRIT2A6NDA9 550 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 IDSB3KWA1 339 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 K7EM74 188 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 AGPSO00116 658 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 CLEC3AO75596 197 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 KLHL18O94889 574 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 SIX3O95343 332 aaPredicted RBP12.28□□□□□ -0.44
VPS28-216ENST00000533806 IGHEP01854 428 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 EPB42P16452 691 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 HSD17B3P37058 310 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 RGS1Q08116 209 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 CHAF1BQ13112 559 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 CHIT1Q13231 466 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 XKR6Q5GH73 641 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 DCAF10Q5QP82 559 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 ADNP2Q6IQ32 1131 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 TCTN3Q6NUS6 607 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 LAS2Q8IYD9 372 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 CYP4X1Q8N118 509 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 KRT78Q8N1N4 520 aa12.28□□□□□ -0.44
VPS28-216ENST00000533806 TEX9Q8N6V9 391 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms