RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 MICAL3Q7RTP6 2002 aa10.4□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CACNA1CQ13936 2221 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C5orf58C9J3I9 102 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HAT1O14929 419 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ATG13O75143 517 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NFATC1O95644 943 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CSF2P04141 144 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 UROSP10746 265 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 IL7P13232 177 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 POLD2P49005 469 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SNRPD2P62316 118 aaKnown RBP10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CREMQ03060 361 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 EIF3MQ7L2H7 374 aaKnown RBP10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HSD11B1LQ7Z5J1 315 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 AKAP1Q92667 903 aaKnown RBP eCLIP10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TRNT1Q96Q11 434 aaKnown RBP10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SEZ6LQ9BYH1 1024 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC6A17Q9H1V8 727 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SMURF2Q9HAU4 748 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 LHX3Q9UBR4 397 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TBC1D30Q9Y2I9 924 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PCDHB3Q9Y5E6 796 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PLXNA1Q9UIW2 1896 aa10.4□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OTOFQ9HC10 1997 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CDH23Q9H251 3354 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OR2B3O76000 313 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ABLIM3O94929 683 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PTTG1O95997 202 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ATP1B2P14415 290 aaPredicted RBP10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FDXRP22570 491 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GSTM2P28161 218 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PXNP49023 591 aaPredicted RBP10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GSK3BP49841 420 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ALDH3A2P51648 485 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ERVPABLB-1P60509 514 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C1DQ13901 141 aaKnown RBP10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZSWIM7Q19AV6 140 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SIGIRRQ6IA17 410 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HMBOX1Q6NT76 420 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 VPS37AQ8NEZ2 397 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OR2T12Q8NG77 320 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OR52J3Q8NH60 311 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FGF13Q92913 245 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC47A1Q96FL8 570 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DIRAS2Q96HU8 199 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MUC13Q9H3R2 512 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GSTO2Q9H4Y5 243 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MKLN1Q9UL63 735 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 POP7O75817 140 aaKnown RBP10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ALX3O95076 343 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PAPSS2O95340 614 aaPredicted RBP10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PEX11BO96011 259 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PTNP21246 168 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CASP3P42574 277 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SELENBP1Q13228 472 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HKDC1Q2TB90 917 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GTDC1Q4AE62 458 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RFTN2Q52LD8 501 aaPredicted RBP10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HMGB4Q8WW32 186 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 REEP1Q9H902 201 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZDHHC3Q9NYG2 299 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SNX6Q9UNH7 406 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PSME4Q14997 1843 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SPTBP11277 2137 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C1QTNF3-AMACRE9PGA6 284 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 UGT2B11O75310 529 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 UPK1BO75841 260 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OPN1SWP03999 348 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RPLP0P05388 317 aaKnown RBP10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MAP2K4P45985 399 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CLCNKAP51800 687 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZNF140P52738 457 aaPredicted RBP10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CTSCP53634 463 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TMEM115Q12893 351 aaPredicted RBP10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TP53BP2Q13625 1128 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HSF5Q4G112 596 aaPredicted RBP10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZNF362Q5T0B9 420 aaPredicted RBP10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 AGAP6Q5VW22 663 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 OR4F3Q6IEY1 312 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CYS1Q717R9 158 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 BEND5Q7L4P6 421 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FAM129CQ86XR2 697 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SFTPA1Q8IWL2 248 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PSD4Q8NDX1 1056 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 KCNJ9Q92806 393 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 AGAP4Q96P64 663 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MACROD1Q9BQ69 325 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 KRT84Q9NSB2 600 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 DNAJC11Q9NVH1 559 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC13A4Q9UKG4 626 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CDH7Q9ULB5 785 aa10.39□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ARID2Q68CP9 1835 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ANKDD1BA6NHY2 528 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GLOD5A6NK44 160 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 H0YAE9 185 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C1QAP02745 245 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC35G4P0C7Q5 338 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PRKAR1AP10644 381 aa10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZNF8P17098 575 aaPredicted RBP10.38□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PDHA2P29803 388 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms