RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PRSS51A0A1B0GVH4 220 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 CLRN2A0PK11 232 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ERICH2A1L162 156 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 SYCE3A1L190 88 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 A6NCN8 305 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 MAGEB17A8MXT2 336 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 NEMFO60524 1076 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 PTP4A3O75365 173 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 AVILO75366 819 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TRMUO75648 421 aaKnown RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 WISP2O76076 250 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ZWINTO95229 277 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 GCNT3O95395 438 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 EML2O95834 649 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 CLPTM1O96005 669 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TIMP1P01033 207 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TSHBP01222 138 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ERVK-10P10266 1014 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 GP1BBP13224 206 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 EZRP15311 586 aaKnown RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 H2AFXP16104 143 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 FERP16591 822 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 MAPK4P31152 587 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 CEACAM8P31997 349 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 THOP1P52888 689 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 CDR2Q01850 454 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 SPOCK1Q08629 439 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 PRKAA1Q13131 559 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 PPP2R5CQ13362 524 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ITGA7Q13683 1181 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 MELKQ14680 651 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 NR1D2Q14995 579 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ZFP69Q49AA0 526 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 CRY2Q49AN0 593 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 RAB41Q5JT25 222 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 FFAR4Q5NUL3 377 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 PLEKHS1Q5SXH7 462 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 BEND6Q5SZJ8 279 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 DHRS7BQ6IAN0 325 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 IRGCQ6NXR0 463 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TMEM53Q6P2H8 277 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 FAM173BQ6P4H8 233 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 MFSD6Q6ZSS7 791 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 HAUS6Q7Z4H7 955 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 CEP57Q86XR8 500 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 GRAMD2AQ8IUY3 354 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 APLFQ8IW19 511 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 CFAP206Q8IYR0 622 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 CCDC170Q8IYT3 715 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF843Q8N446 348 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 LINC00469Q8N7U9 141 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 CCDC89Q8N998 374 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 POC5Q8NA72 575 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TRIM58Q8NG06 486 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF75CPQ92670 426 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ATP6V0A1Q93050 837 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 FAM120BQ96EK7 910 aaKnown RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 GIMAP5Q96F15 307 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 SLC47A1Q96FL8 570 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 COG3Q96JB2 828 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 RPGRIP1Q96KN7 1286 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ART5Q96L15 291 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 NEK1Q96PY6 1258 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 FNBP1Q96RU3 617 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TSC22D3Q99576 134 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 LITAFQ99732 161 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ASCL2Q99929 193 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TREX2Q9BQ50 279 aaPredicted RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 RTP3Q9BQQ7 232 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 CHCHD6Q9BRQ6 235 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TRIM51Q9BSJ1 452 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 KIFC3Q9BVG8 833 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TEX12Q9BXU0 123 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 PITPNM3Q9BZ71 974 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 NYXQ9GZU5 481 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 SPATC1LQ9H0A9 340 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ABCG4Q9H172 646 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 GLT8D2Q9H1C3 349 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 CENPHQ9H3R5 247 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 KCNK15Q9H427 330 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TSPY26PQ9H489 355 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 VCPKMTQ9H867 229 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ZWILCHQ9H900 591 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 SIX2Q9NPC8 291 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 BATF3Q9NR55 127 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 RHBDL2Q9NX52 303 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 NPAP1Q9NZP6 1156 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 FLRT3Q9NZU0 649 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 SEPT10Q9P0V9 454 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 SEC63Q9UGP8 760 aaKnown RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 PCSK1NQ9UHG2 260 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 VPS28Q9UK41 221 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 GTF3C4Q9UKN8 822 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 PAIP2BQ9ULR5 123 aaKnown RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF148Q9UQR1 794 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TMEM5Q9Y2B1 443 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 TMED5Q9Y3A6 229 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 DYNC1LI1Q9Y6G9 523 aaKnown RBP1.97□□□□□ -2.09
HMGB1-208ENST00000490788 DUOX1Q9NRD9 1551 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 EP300Q09472 2414 aaPredicted RBP1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms